PI0019629.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0019629.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 6630994 .. 6633159 (+)
Sequence length	276
RNA-Seq Expression	PI0019629.1
Synteny	PI0019629.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTTGTAAGAAATTGAAGAGGTCATTACGCTGCTGCTTAATGTTCCACAAACCCAAGCTTCCACCTCACGGAACCATCAAATTTCATTGAGGAAGCTAATGGTTTAGCTGTTGAAAGGAATATCTATGGCTTTTTCGAGTTCTCACCTGGGTTTAAGCAGTAGGGGTTTCTGTGAATATCAATTACCGGAAATGTAGCTGATGTGAAGTAGCAGAAGAATTGCGAGAAAAAACTAAGTTCTTGTTTGGTCCATCCTAAAAGAATGGAGAAGCATACACTTGTTTGGTTGCCAAGACGCCGATGCAAATCCTTTAGGGTTGAAGGTTACGTATAGGCTCTGAATGTCCAAACAAAACGACAACAAACTCCAAAAGTAAACGAATTACAGACAAATTTCAGTTGGGTCAAACCCAAAACCATTGAGTTTTGAACCAATTTTTGTTTCGACGACTTTGCGAGGAAATCGGAAGTTCTCAGGTCAGTCTAGTAAGTCAATGTTTCTATACCTAATATTCAAGTGGGGCTGGGAAGAAGAAGAATTAGATGTTTTCCTGTTTTCTTTTTCCCTCATTTGATTATGATTTCTAGAAAAAAAAGGGACAGCCTAGTATTTTACTTGGTTGCGTATGAACAAATTTGTTTCTTCTAACCGCTGATTATTAGATTATTTTATTTCTACTGTTTATTTGATTGATTTTCAAAGGATCAAACCTTCCTATTCTATGAACCCTATTAAATTTCTATATTCAACTGCTTGAGAGAACAGGAACCATGACTTTCGGGTGGAATTGGTCATATCTTCGTGTAATCTAACAGTCTTTGGAATTTCAATAATTTTGCCAACAACCCTTTATCTTTTCTGTAAATTATTGAACCGGTCAACTAACCCATCTGTTCATCTTATGAAGACCGTTCCCTGAGGTCGAGGATATGGAGTTTGGACCAGGCGAAGAGACTTGTACTGGGACCAAGGGGACCAGGATTCTCCAATTTTGGGTGTTGTGGGCCTCCACGGTTAGATTTCATTATTTGCCCTGTGTTCTGAAATGATATTATCATCTTGATTCTTTGATATTTTTCAAGTTTCTGCAGTATCCTTATGAACAAATGTCAAAATGTTTTGGTAATCAAAAAGAATAAAGCAACAATAATTCTTTTTGGTCATAGTCAAATCAAATTCTGTATCATATTTCAACTTTTACTTTTCTTCTACTCCTCCTATCTATCTATCTACCCTTTTGGTTTATTTTACATAAGTATAACATGGAGTAAACCGTGTCTTTTTCATTAAGGCAAAACCTGTAAGTTTCTTATTATCTCTAATATTTAAATGAAACTTGTCTTCTATTTCATCTCCAGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCTTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAAGGTTATATAACTGTTCCCTTCTGTTTTCTTTTCCTTTTTTGTTCATAATTCTGTAATAAATATCAAGGGTGCTTTAACCCATACCAGCTGCCTCAATTTATTGTCTTGTGAGAGTTTCTTTGGGGGAGCACTGCTTTAACGTTTTTTTTCCTTCTTTTGGAAAAAAAAACTTTCAACTTGAAATTTTGTTTATGTTTCTCTAACTATTTTGTTGAACAGTATATTTTCTTTAATGTCCAGGGATGTCAAGATTCAACTTTCTGACAGATTTTTTTTTTTTTTTTTGAAGAATATCGCTGTTGAAATATAGACCCTTTTCTTCGTCAATTCAACATCTACATAATTCTTCAATTTGTACCTCCCTCAATTGTGATTGTTTTGAGTGTTGGAGTGGCCCTAATACTTTTCATGCCTGCTTTCCATATTTGTAATTTGAGCAAAGAACTTCTGGCTGCTGTTAAGATTTTTTCATTAGTCTTGTTATTTGTTGTTCTATGTCTTGTCTAAATTTCTGAATTGAGGAAATTTGGTTGGGTAACTTCCCACATCATGTTTAGTTCAGTTCACCTAAGATAAAATCTTAGGTAGATTTTGAAGTGGTAGTTTTGTTTTTGTACCTGGACCCTGAAGGATGATAGCAAACAAAAGAGGCTGAGCTTAATTTCCATCTAA

mRNA sequence

ATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTTACGCCGATGCAAATCCTTTAGGGTTGAAGGTTACACCGTTCCCTGAGGTCGAGGATATGGAGTTTGGACCAGGCGAAGAGACTTGTACTGGGACCAAGGGGACCAGGATTCTCCAATTTTGGGTGTTGTGGGCCTCCACGCTTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAAGGATGATAGCAAACAAAAGAGGCTGAGCTTAATTTCCATCTAA

Coding sequence (CDS)

ATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTTACGCCGATGCAAATCCTTTAGGGTTGAAGGTTACACCGTTCCCTGAGGTCGAGGATATGGAGTTTGGACCAGGCGAAGAGACTTGTACTGGGACCAAGGGGACCAGGATTCTCCAATTTTGGGTGTTGTGGGCCTCCACGCTTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAAGGATGATAGCAAACAAAAGAGGCTGAGCTTAATTTCCATCTAA

Protein sequence

MENCLVGSHGMAVYADANPLGLKVTPFPEVEDMEFGPGEETCTGTKGTRILQFWVLWASTLLKESPTFVLFFFLLLFKDDSKQKRLSLISI

Homology

[Close]

BLAST of PI0019629.1 vs. ExPASy TrEMBL
Match: A0A0A0KCA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.1e-37
Identity = 86/109 (78.90%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MENCLVGSHGMA---VYADANPLGLKVT---------------PFPEVEDMEFGPGEETC 60
           MENCLVGSHGMA   VYADANP  LKVT               PFPEVEDMEFGPGEETC
Sbjct: 52  MENCLVGSHGMAVQPVYADANPYALKVTYRFGMSKQKDNKPQKPFPEVEDMEFGPGEETC 111

Query: 61  TGTKGTRILQFWVLWASTLLKESPTFVLFFFLLLFKDDSKQKRLSLISI 92
            GTKGTRILQFWVLW ST LKESPTFVLFFFLLLFKDDSKQKRLSLISI
Sbjct: 112 AGTKGTRILQFWVLWVSTPLKESPTFVLFFFLLLFKDDSKQKRLSLISI 160

[Close]

BLAST of PI0019629.1 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 51/81 (62.96%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1   MENCLVGSHGMAVYADANPL--------GLKV-TPFPEVEDMEFGPGEETCTGTKGTRIL 60
           MENCLVGSHGMAV      L         L+V  PFPEVEDMEFGPGEETC GTKGTRIL
Sbjct: 31  MENCLVGSHGMAVQPVCKKLKSFDDFARKLEVLRPFPEVEDMEFGPGEETCAGTKGTRIL 90

Query: 61  QFWVLWASTLLKESPTFVLFF 73
           QFWVLW ST+ +E    ++ F
Sbjct: 91  QFWVLWVSTVCREPGRLIVMF 111

[Close]

BLAST of PI0019629.1 vs. NCBI nr
Match: XP_031743531.1 (uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.1 uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 33 MEFGPGEETCTGTKGTRILQFWVLWASTLLKESPTFVLFF 73
          MEFGPGEETC GTKGTRILQFWVLW ST+ +E    ++ F
Sbjct: 1  MEFGPGEETCAGTKGTRILQFWVLWVSTVCREPGRLIVMF 40

The following BLAST results are available for this feature:

BLAST of PI0019629.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019629.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA1	8.1e-37	78.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1	[more]

BLAST of PI0019629.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47177.2	1.7e-17	62.96	hypothetical protein Csa_020828 [Cucumis sativus]	[more]
XP_031743531.1	1.6e-07	70.00	uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532....	[more]

BLAST of PI0019629.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0019629	PI0019629	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0019629.1-exon	PI0019629.1-exon-chr11:6630994..6631033	exon
PI0019629.1-exon	PI0019629.1-exon-chr11:6631324..6631357	exon
PI0019629.1-exon	PI0019629.1-exon-chr11:6631938..6632043	exon
PI0019629.1-exon	PI0019629.1-exon-chr11:6632435..6632488	exon
PI0019629.1-exon	PI0019629.1-exon-chr11:6633118..6633159	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0019629.1-cds	PI0019629.1-cds-chr11:6630994..6631033	CDS
PI0019629.1-cds	PI0019629.1-cds-chr11:6631324..6631357	CDS
PI0019629.1-cds	PI0019629.1-cds-chr11:6631938..6632043	CDS
PI0019629.1-cds	PI0019629.1-cds-chr11:6632435..6632488	CDS
PI0019629.1-cds	PI0019629.1-cds-chr11:6633118..6633159	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0019629.1	PI0019629.1-protein	polypeptide