Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAGAAAAAGAAATGGGCAGTCCAGTCCATAATAATGTTTTGGCCCTTTTGAGCTGCAGGCCTGCCATGGTTGAGAAACCATTCTACACCACAAGTTCTTCATTCTACAGTTCTCCCATGAAAGTCACATCCAATTCCACTTCTTTCAATACTTGGTCTTCCAATTCACAAATATCCTTCCTTTTCTTCCTTTACTCATCTACTCCTGCTGTTAATTGCTGTGTGATTTCAACTGTTTTAACCCTTTCTGGGTTTGAATCAGCTGCTTGA mRNA sequence ATGGCAGAAAAAGAAATGGGCAGTCCAGTCCATAATAATGTTTTGGCCCTTTTGAGCTGCAGGCCTGCCATGGTTGAGAAACCATTCTACACCACAAGTTCTTCATTCTACAGTTCTCCCATGAAAGTCACATCCAATTCCACTTCTTTCAATACTTGGTCTTCCAATTCACAAATATCCTTCCTTTTCTTCCTTTACTCATCTACTCCTGCTGTTAATTGCTGTGTGATTTCAACTGTTTTAACCCTTTCTGGGTTTGAATCAGCTGCTTGA Coding sequence (CDS) ATGGCAGAAAAAGAAATGGGCAGTCCAGTCCATAATAATGTTTTGGCCCTTTTGAGCTGCAGGCCTGCCATGGTTGAGAAACCATTCTACACCACAAGTTCTTCATTCTACAGTTCTCCCATGAAAGTCACATCCAATTCCACTTCTTTCAATACTTGGTCTTCCAATTCACAAATATCCTTCCTTTTCTTCCTTTACTCATCTACTCCTGCTGTTAATTGCTGTGTGATTTCAACTGTTTTAACCCTTTCTGGGTTTGAATCAGCTGCTTGA Protein sequence MAEKEMGSPVHNNVLALLSCRPAMVEKPFYTTSSSFYSSPMKVTSNSTSFNTWSSNSQISFLFFLYSSTPAVNCCVISTVLTLSGFESAA
Homology
BLAST of PI0017222.1 vs. ExPASy TrEMBL
Match: A0A0A0LM81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379930 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 7.0e-33 Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 0
Query: 1 MAEKEMGSPVHNNVLALLSCRPAMVEKPFYTTSSSFYSSPMKVTSNSTSFNTWSSNSQIS 60
MA+KEMGSPV NNVLALL RPAMV+KPFYTTSSSFY+SP KVTSNSTS NTW SNSQIS
Sbjct: 1 MAQKEMGSPVRNNVLALLISRPAMVDKPFYTTSSSFYNSPTKVTSNSTSSNTWYSNSQIS 60
Query: 61 FLFFLYSSTPAVNCCVISTVLTLSGFESAA 91
FL+FLYSSTP+VNCCVIST+LTLSGF+SAA
Sbjct: 61 FLYFLYSSTPSVNCCVISTLLTLSGFQSAA 90
BLAST of PI0017222.1 vs. NCBI nr
Match: KGN62913.1 (hypothetical protein Csa_021967 [Cucumis sativus]) HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32 Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 0
Query: 1 MAEKEMGSPVHNNVLALLSCRPAMVEKPFYTTSSSFYSSPMKVTSNSTSFNTWSSNSQIS 60
MA+KEMGSPV NNVLALL RPAMV+KPFYTTSSSFY+SP KVTSNSTS NTW SNSQIS
Sbjct: 1 MAQKEMGSPVRNNVLALLISRPAMVDKPFYTTSSSFYNSPTKVTSNSTSSNTWYSNSQIS 60
Query: 61 FLFFLYSSTPAVNCCVISTVLTLSGFESAA 91
FL+FLYSSTP+VNCCVIST+LTLSGF+SAA
Sbjct: 61 FLYFLYSSTPSVNCCVISTLLTLSGFQSAA 90
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LM81 | 7.0e-33 | 85.56 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379930 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN62913.1 | 1.4e-32 | 85.56 | hypothetical protein Csa_021967 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PROSITE | PS51257 | PROKAR_LIPOPROTEIN | coord: 1..20
score: 5.0 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0017222 | PI0017222 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0017222.1-exon | PI0017222.1-exon-chr03:4114223..4114495 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0017222.1-cds | PI0017222.1-cds-chr03:4114223..4114495 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0017222.1 | PI0017222.1-protein | polypeptide |
|
