PI0014140.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0014140.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIB domain-containing protein
Location	chr11: 448973 .. 451247 (+)
Sequence length	1010
RNA-Seq Expression	PI0014140.1
Synteny	PI0014140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTTCTCCCTTTCTTCCAAGCTCCAACCTAAGTCGAGCGAAACCGGCAAAAACCCTAGCACTCACCGTCGTCTTTATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAAGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTTTCAAATCCACCACTCAAGCTTACTCTTCCACTCCTGCGGTCTCTCCCAAGAGGAAGCTCAAACCCTCAAGTGCCAACGTTTCGGGCCAAAAATTGGAAGCCGGAACACAGAAAGGTTCGATTCTGAAGCCTTGCCAAGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTTCGCGCCCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAAAAACCTCCAGGTTACTTTGATTTCTCTTTTGTTCTAACCGACATGGCTATTTTTTTAGTATCGTTTTTCTACTTCCTTCTTTGCTGCAATCTCTTCGTTCGGGTTGTTATTTTAACTTAGCCTAGAACTTGAGGTTTAGGGTGTTGTGTTCATTCGTAGTGTATCAAATGTTAGTTCTCTGTGAGCCGATTCTCTCTTTCAGTCCTCAGTTGCTCAATTGAAGGTCTCTGGAATGGATGTTCTGAATTTGAAAACTAGGTTAAAGTATAGGTGAAACTCACTATTCGCGAATCAAATAATCTACATACCTGTTCGCAAGTTTCAACTGGCTTGAATAATGAACAAGCTATTCAGGTGGTGAATGCATTTATTTAGCAGTATCGTTTAAAGGATTGAATGCTACTGTGTGACCTTATCTTTTCACATGGATTCGGGTTTGAGCTCTGTTTTGAAAAAGTTAGCTGCTACATAGAGCTGGGAGGGAGAACCTACGAAAACCCTCCTGATGACTAATTTTGAGTATAAATACTTTCATTGAAGTTCATGAAAAGCTAAACCAGGATTTTCTGTCGCTTAATCAAATGAAATAGATATGTTGGCTACGAGTTTCTCAAGGACGTGAGGTGAATATGCAGATACACAGATTATCAAGCAAAAGAAGCTTGAGCTTCTCTCACATTGCCCTATAATGTGTTTTTTTTCTTGGAAACAGCATGAAAGTGAAACACTTGAAGCTTATTTTTGCTCATCAATTGACATTGTGGTAAATGTATCAATATATTGACGGTGTTGAGTAGTTGAAACAGTAGTTGTCTCGTGTCTGCCACATCTAAAACAGTCAGTCAATTTATCTAATGTGTGTGTCATGTTAAGTATTCTATTAATGGTGTTAACTGTAGAGATTGAGGGGCTACTTCGGCTCCAACTTCAAGTGGGTGTTATAGGTCACCCCATGTTTAGGACTCCAATAATAATATTTGGGGGAATGGTTGATTTATGGAGGGCTAGTGAGTTTTATCATAAAACAAGTGTTATGATAATATGCCTTTGGGGGAAGGTTTATGTTAAGTGTTATGATAGTTGGGCAACATGGAGGTGTGAATTACACTACTTGTTTGACAGAGGAATGCGTAGGGCCCCACGACTAAAAAACATCGGTTTTTGTCTTGTTTAACACTAGGACCTAGAAATTAACATTGTATTAATCCTTTTCTTTTTGTGAATTTGGAAGATTTTGCTGATTGATACCCATGTATATTACATTTTGGTGTGCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAAAAAGTGGGAATGCTTGAGATTGCAAAATTTCTATCCATCCATTTTGTGAAATCTGGTTAACCTAAGCTTTCAGTGCAACTAATGCTTCTCTCTAAACCTCTCTTCCAAATCCTTAACGATGTTTTGTTATATTTTGTTTGGCCGATCCTAGGACATCGCCTTTACTTTTTGGTTTTACTCTGATTTAGGAAGAGTGGGCGTTTCTTGTTCAGACATTGTTGACTATTAGTATTCTATAATTAATTAAGGTAGCTTTTCTGTCTTAATTAATTTTGGGGATGTATTGATCGTTGTGGACTTCAAATTGATATTTGTTAAGGTAAATGCAATTTATTAGTAGGTTGAATGGTAATTCTAATTATTAAAGTGAACCTAGCTCAATGGTTTCATCACTACAATCGCTGAAAAGATGGTAAATGTAATTTAATGCTAAGTTGTAAGTGTAATTTAGTATATGAATACTTGAATTTTCAATCATGTGTATGATCTTGAAGAAAAATATGTTTCTAAATTGAAATTCAAAGTAGAGACTCGGAAATTCAAATCTACACAATAA

mRNA sequence

CTCGTTCTCCCTTTCTTCCAAGCTCCAACCTAAGTCGAGCGAAACCGGCAAAAACCCTAGCACTCACCGTCGTCTTTATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAAGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTTTCAAATCCACCACTCAAGCTTACTCTTCCACTCCTGCGGTCTCTCCCAAGAGGAAGCTCAAACCCTCAAGTGCCAACGTTTCGGGCCAAAAATTGGAAGCCGGAACACAGAAAGGTTCGATTCTGAAGCCTTGCCAAGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTTCGCGCCCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAAAAACCTCCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAAAAAGTGGGAATGCTTGAGATTGCAAAATTTCTATCCATCCATTTTGTGAAATCTGGTTAACCTAAGCTTTCAGTGCAACTAATGCTTCTCTCTAAACCTCTCTTCCAAATCCTTAACGATGTTTTGTTATATTTTGTTTGGCCGATCCTAGGACATCGCCTTTACTTTTTGGTTTTACTCTGATTTAGGAAGAGTGGGCGTTTCTTGTTCAGACATTGTTGACTATTAGTATTCTATAATTAATTAAGGTAGCTTTTCTGTCTTAATTAATTTTGGGGATGTATTGATCGTTGTGGACTTCAAATTGATATTTGTTAAGGTAAATGCAATTTATTAGTAGGTTGAATGGTAATTCTAATTATTAAAGTGAACCTAGCTCAATGGTTTCATCACTACAATCGCTGAAAAGATGGTAAATGTAATTTAATGCTAAGTTGTAAGTGTAATTTAGTATATGAATACTTGAATTTTCAATCATGTGTATGATCTTGAAGAAAAATATGTTTCTAAATTGAAATTCAAAGTAGAGACTCGGAAATTCAAATCTACACAATAA

Coding sequence (CDS)

ATGGCCTCAGGTCTTAGCAATGGCACCAAGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTTTCAAATCCACCACTCAAGCTTACTCTTCCACTCCTGCGGTCTCTCCCAAGAGGAAGCTCAAACCCTCAAGTGCCAACGTTTCGGGCCAAAAATTGGAAGCCGGAACACAGAAAGGTTCGATTCTGAAGCCTTGCCAAGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTTCGCGCCCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAAAAACCTCCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAAAAAGTGGGAATGCTTGAGATTGCAAAATTTCTATCCATCCATTTTGTGAAATCTGGTTAA

Protein sequence

MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQKGSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFDGREKVGMLEIAKFLSIHFVKSG

Homology

[Close]

BLAST of PI0014140.1 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 39  RKLKPSSANVSGQKLEAGTQKGSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKN 98
           RK K        +K         + KP ++SP LA FLG  ++SRP+ VK++W YIK  +
Sbjct: 94  RKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHD 153

Query: 99  LQNPTDKRQIICDEKLKAIFDGREKVGMLEIAKFLS 135
           LQ+P DKR I+CD+KLK++F+  + + M  + K+L+
Sbjct: 154 LQDPNDKRTILCDDKLKSVFE-VDTLHMFTMNKYLT 188

[Close]

BLAST of PI0014140.1 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 38  KRKLKPSSANVSGQKLEAGTQKGSI-LKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKL 97
           KRK K  S +   +K        SI ++   +S  L  FLG  E+ R + VK IW YIK 
Sbjct: 95  KRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKE 154

Query: 98  KNLQNPTDKRQIICDEKLKAIFDGREKVGMLEIAKFLSIH 137
            +LQNP D+R+I+CDEK++ IF   +K+ M  + K L+ H
Sbjct: 155 HDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

[Close]

BLAST of PI0014140.1 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 16  RTLLDSFK-STTQAYSSTPAVSPKRKLKPSSANVSGQK-LEAGTQKGSILK------PCQ 75
           R+L D  K + T A   T  ++  ++      N S  K      +KG++ K         
Sbjct: 66  RSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT 125

Query: 76  VSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFDGREKVGML 135
           +S +LA  LG+ E++R E V+++W+YIK  NLQNP +K++I+CDEKL+ I    +   M 
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 136 EIAKFLSIHFVK 140
           E+ K L+ H  +
Sbjct: 186 EMHKILASHMTE 195

[Close]

BLAST of PI0014140.1 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 67  QVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFDGREKVGM 126
           ++S AL   LG    +RP  +  IW Y+K + LQNP D     CD  L+ +F G EK+  
Sbjct: 320 KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKF 379

Query: 127 LEIAKFLSIH 137
             +++ +S H
Sbjct: 380 TMVSQKISHH 388

[Close]

BLAST of PI0014140.1 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 67  QVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFD 120
           ++S A A  LG  E +RP+ V  +W YIK   LQ+  +KR I CD+ L+ +F+
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFE 259

[Close]

BLAST of PI0014140.1 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.2e-52
Identity = 114/146 (78.08%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGLSNGT+FFKGCRTLLDS KSTTQAYSSTP VS K  LKPS+A VSGQK +   +K 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G +LK  +VSP LAGFLGQSEI+R EAVKQIW YIKL NLQNPTDKRQIICD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKSG 142
           AIF GREKVGMLEI KFLSIHFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of PI0014140.1 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 110/146 (75.34%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGLSNGT+FF+GC+TLLDS K TTQAYSSTPAVS K KLKP SA VSGQK +A  ++ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G I+K  +VSP LAGFLGQSEISR +A+KQIWSYIKL NLQN TDKRQI CD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKSG 142
           AIF GREKVGMLEI+KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of PI0014140.1 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 110/146 (75.34%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGLSNGT+FF+GC+TLLDS K TTQAYSSTPAVS K KLKP SA VSGQK +A  ++ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G I+K  +VSP LAGFLGQSEISR +A+KQIWSYIKL NLQN TDKRQI CD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKSG 142
           AIF GREKVGMLEI+KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of PI0014140.1 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 105/145 (72.41%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGL+NGT+ F+GCRTLLDS KSTTQAYSS  AVSPK +LK S A  S +K EAG +K 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G I K  QVSPALAGFLG SE SR EAVKQIWSYIKL +LQNP +KRQI CDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKS 141
           AIFDGRE VG+LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of PI0014140.1 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 104/145 (71.72%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGL+NGT+ F+GCRTLLDS KSTTQAYSS  AVSPK +LK S A  + +K EAG +K 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G I K  QVSPALAGFLG SE SR EAVKQIWSYIKL +LQNP +KRQI CDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKS 141
           AIFDGRE VG+LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of PI0014140.1 vs. NCBI nr
Match: XP_004154030.1 (upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262.1 hypothetical protein Csa_005564 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 114/146 (78.08%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGLSNGT+FFKGCRTLLDS KSTTQAYSSTP VS K  LKPS+A VSGQK +   +K 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G +LK  +VSP LAGFLGQSEI+R EAVKQIW YIKL NLQNPTDKRQIICD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKSG 142
           AIF GREKVGMLEI KFLSIHFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of PI0014140.1 vs. NCBI nr
Match: XP_008460088.1 (PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cucumis melo var. makuwa] >TYK24519.1 protein TRI1-like [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 5.4e-50
Identity = 110/146 (75.34%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGLSNGT+FF+GC+TLLDS K TTQAYSSTPAVS K KLKP SA VSGQK +A  ++ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G I+K  +VSP LAGFLGQSEISR +A+KQIWSYIKL NLQN TDKRQI CD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKSG 142
           AIF GREKVGMLEI+KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of PI0014140.1 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 108/145 (74.48%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGL+NGT+ F+GCRTLLDS KSTTQAYSS  AVSPK +LK S A  S +K EAG +K 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G ILK  QVSPALAGFLG SE SRPEAVKQIWSYIKL NLQNP +KRQI CDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKS 141
           AIFDGRE VG+LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of PI0014140.1 vs. NCBI nr
Match: XP_023514456.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 3.2e-47
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGL+NGT+ F+GCRTLLDS KSTTQAYSS  AVSPK KLK S A  S +  EAG +K 
Sbjct: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G I K  QVSPALAGFLG SE SRPEAVKQIWSYIKL NLQNP +KRQI CDEKLK
Sbjct: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKS 141
           AIFDGRE VG+LEI K LS HFVKS
Sbjct: 176 AIFDGRENVGILEIGKLLSAHFVKS 200

[Close]

BLAST of PI0014140.1 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-46
Identity = 106/145 (73.10%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQK- 60
           MASGL+NGT+ F+GCRTLLDS KSTTQAYSS  AVSPK ++K S A  S +K EAG +K 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 61  ----GSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLK 120
               G ILK  QVSPALAGFLG SE SR EAVKQIWSYIKL NLQNP +KRQI CDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGMLEIAKFLSIHFVKS 141
           AIFDGRE VG LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKS 145

[Close]

BLAST of PI0014140.1 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-26
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 12  FKGCRTLLDSFKSTTQAYSST-----PAVSPKRKLKPSSANVSGQKLEAGTQKGSILKPC 71
           F+G R+LL      T +  S      PA  PK K KP     S    +   +   I K  
Sbjct: 9   FRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVT 68

Query: 72  QVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFDGREKVGM 131
            VSP LA FLG  E SR +A+K IW+YIK  +LQNP DKR+I CDE LK IF+G++KVG 
Sbjct: 69  PVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGF 128

Query: 132 LEIAKFLSIHFVKS 141
           LEI+K LS HFVK+
Sbjct: 129 LEISKLLSPHFVKT 142

[Close]

BLAST of PI0014140.1 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 39  RKLKPSSANVSGQKLEAGTQKGSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKN 98
           R L   +A+ +G K   G Q   ILK   VS  LA F+G++E+SR  AVK+IW YIKL N
Sbjct: 9   RVLMAKAASSTGAK--TGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNN 68

Query: 99  LQNPTDKRQIICDEKLKAIFDGREKVGMLEIAKFLSIHFVKS 141
           LQNP +KR+I+CDE+LK IF G++ VG LEI+K LS HF KS
Sbjct: 69  LQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of PI0014140.1 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 39  RKLKPSSANVSGQKLEAGTQKGSILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKN 98
           R L   +A V    + AG  KG I K   VS  LA F G+ E++R  A+K++W Y+KL N
Sbjct: 12  RTLMSKAATVEAVTV-AGEGKG-IFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHN 71

Query: 99  LQNPTDKRQIICDEKLKAIFDGREKVGMLEIAKFLSIHFVKS 141
           LQNP +K++I CD+KLK IFDG++KVG+ EI K LS HF KS
Sbjct: 72  LQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of PI0014140.1 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-18
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 62  ILKPCQVSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFDGR 121
           I+KP  VS A+   +G  EI R +A+K+IW+YIK  +LQ+P +KR I+CDEKLK IF+G+
Sbjct: 68  IMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGK 127

Query: 122 EKVGMLEIAKFLSIHFV 139
           E+VG LEIAK +  HF+
Sbjct: 128 ERVGFLEIAKLIGPHFL 144

[Close]

BLAST of PI0014140.1 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.4e-18
Identity = 52/131 (39.69%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 9   TKFFKGCRTLLDSFKSTTQAYSSTPAVSPKRKLKPSSANVSGQKLEAGTQ-KGSILKPCQ 68
           T  F+   T L S +     ++S PA   +     +SA  S +      +    I+KP  
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRP 75

Query: 69  VSPALAGFLGQSEISRPEAVKQIWSYIKLKNLQNPTDKRQIICDEKLKAIFDGREKVGML 128
           VSP +   +   EI+R +A+K+IW+YIK  +LQ+P +KR+I+CDEKLK IF+GR++VG L
Sbjct: 76  VSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 135

Query: 129 EIAKFLSIHFV 139
           EIAK +  HF+
Sbjct: 136 EIAKLIGPHFL 141

The following BLAST results are available for this feature:

BLAST of PI0014140.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	3.2e-13	39.58	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	8.7e-11	40.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	1.5e-10	33.33	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9FMT4	5.4e-05	35.71	SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]
Q9P7S3	1.2e-04	41.51	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of PI0014140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY9	6.2e-52	78.08	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]
A0A5D3DMJ2	2.6e-50	75.34	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	2.6e-50	75.34	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A6J1KHF5	6.6e-46	72.41	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	1.5e-45	71.72	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of PI0014140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154030.1	1.3e-51	78.08	upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262....	[more]
XP_008460088.1	5.4e-50	75.34	PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cuc...	[more]
KAG6593745.1	1.5e-47	74.48	hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514456.1	3.2e-47	73.79	upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593744.1	2.7e-46	73.10	hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0014140.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	5.7e-26	47.76	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.6e-23	54.90	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	1.6e-20	50.98	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.2e-18	54.55	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	4.4e-18	39.69	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 62..141 e-value: 2.6E-31 score: 120.0
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 64..137 e-value: 7.4E-31 score: 105.8
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 61..139 score: 22.078089
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 56..141 e-value: 2.6E-28 score: 99.7
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 59..139
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..140
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 7..140
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 66..137 e-value: 1.11875E-35 score: 116.104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0014140	PI0014140	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014140.1-five_prime_utr	PI0014140.1-five_prime_utr-chr11:448973..449060	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014140.1-exon	PI0014140.1-exon-chr11:448973..449360	exon
PI0014140.1-exon	PI0014140.1-exon-chr11:450626..451247	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014140.1-cds	PI0014140.1-cds-chr11:449061..449360	CDS
PI0014140.1-cds	PI0014140.1-cds-chr11:450626..450751	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014140.1-three_prime_utr	PI0014140.1-three_prime_utr-chr11:450752..451247	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0014140.1	PI0014140.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus