PI0013614.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0013614.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr08: 10165513 .. 10166022 (+)
Sequence length	510
RNA-Seq Expression	PI0013614.1
Synteny	PI0013614.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATGTTGCAAACGCAATGAAATTCCCTTCTGATGAAAGTTGCAGTGCAATAGAATCCTTGGGATGGGATTATTGCGAGGAAGAAGCTTCTACATTGCTCAGCCTTGAAGAATTCTTTGAAGATCTCCATGAAATAGAAAGCGTAAACGCTGTGTCTAGCGAAAGGAAATCAGAACCTTTGAGTATGTCAACCCGAGGCGAGGAGAGGATTAAGCCATCTACTGAGGAACCACCAAAATTAAAGCTAAAGCCACTACCAACCCGAGGCCTTCACTCTGTTCGCAAGCTATCTATTCGACTTTTCGAGCGTCTCCTCCGCGCCGTCTGCCCAGTCCTCTTCGTCCAGTCATTCCTCATCCCAAGTTCGTCTGAGCTTCATCGTTACTCCTTTTCCAGCCCGTCGAACCTCCCTCCTAGGCTTCAAGCCATTTTTTGGTACATTTCGTTTTGGGACTTAAGCTATTTAGAGTTCAAATGTCAGATTCTGATTGGAGTGAAGTTTTGA

mRNA sequence

ATGTTCAATGTTGCAAACGCAATGAAATTCCCTTCTGATGAAAGTTGCAGTGCAATAGAATCCTTGGGATGGGATTATTGCGAGGAAGAAGCTTCTACATTGCTCAGCCTTGAAGAATTCTTTGAAGATCTCCATGAAATAGAAAGCGTAAACGCTGTGTCTAGCGAAAGGAAATCAGAACCTTTGAGTATGTCAACCCGAGGCGAGGAGAGGATTAAGCCATCTACTGAGGAACCACCAAAATTAAAGCTAAAGCCACTACCAACCCGAGGCCTTCACTCTGTTCGCAAGCTATCTATTCGACTTTTCGAGCGTCTCCTCCGCGCCGTCTGCCCAGTCCTCTTCGTCCAGTCATTCCTCATCCCAAGTTCGTCTGAGCTTCATCGTTACTCCTTTTCCAGCCCGTCGAACCTCCCTCCTAGGCTTCAAGCCATTTTTTGGTACATTTCGTTTTGGGACTTAAGCTATTTAGAGTTCAAATGTCAGATTCTGATTGGAGTGAAGTTTTGA

Coding sequence (CDS)

ATGTTCAATGTTGCAAACGCAATGAAATTCCCTTCTGATGAAAGTTGCAGTGCAATAGAATCCTTGGGATGGGATTATTGCGAGGAAGAAGCTTCTACATTGCTCAGCCTTGAAGAATTCTTTGAAGATCTCCATGAAATAGAAAGCGTAAACGCTGTGTCTAGCGAAAGGAAATCAGAACCTTTGAGTATGTCAACCCGAGGCGAGGAGAGGATTAAGCCATCTACTGAGGAACCACCAAAATTAAAGCTAAAGCCACTACCAACCCGAGGCCTTCACTCTGTTCGCAAGCTATCTATTCGACTTTTCGAGCGTCTCCTCCGCGCCGTCTGCCCAGTCCTCTTCGTCCAGTCATTCCTCATCCCAAGTTCGTCTGAGCTTCATCGTTACTCCTTTTCCAGCCCGTCGAACCTCCCTCCTAGGCTTCAAGCCATTTTTTGGTACATTTCGTTTTGGGACTTAAGCTATTTAGAGTTCAAATGTCAGATTCTGATTGGAGTGAAGTTTTGA

Protein sequence

MFNVANAMKFPSDESCSAIESLGWDYCEEEASTLLSLEEFFEDLHEIESVNAVSSERKSEPLSMSTRGEERIKPSTEEPPKLKLKPLPTRGLHSVRKLSIRLFERLLRAVCPVLFVQSFLIPSSSELHRYSFSSPSNLPPRLQAIFWYISFWDLSYLEFKCQILIGVKF

Homology

[Close]

BLAST of PI0013614.1 vs. ExPASy TrEMBL
Match: A0A5A7TGQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00790 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.5e-12
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 2   FNVANAMKFPSD-ESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSE 61
           FN+ N MKF +D ++   IESLGWDY EEE  + L SL+EFFE+    + +E V+ VSS 
Sbjct: 10  FNIVNVMKFLADVKNYIMIESLGWDYFEEEVLAELFSLKEFFEEEDLYYTLEEVDVVSSG 69

Query: 62  RKSEPLSMSTRGEERIKPSTEEPPKLKLKPL 88
           RK EP  M T+G+++ K S EEPP+L+LKPL
Sbjct: 70  RKFEPFDMQTKGDKKNKISIEEPPELELKPL 100

[Close]

BLAST of PI0013614.1 vs. ExPASy TrEMBL
Match: A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 2   FNVANAMKFP-SDESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSE 61
           FN   +MKFP +D   +AIESLGWDYC+EE    L S EEFFE+    + +E VN +  +
Sbjct: 85  FNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYILEEVNVMLGK 144

Query: 62  RKSEPLSMSTRGEERIKPSTEEPPKLKLKPLP 89
            K E L + T+G+++IK S EEPP+++LKPLP
Sbjct: 145 TKFESLDLKTKGKKKIKSSIEEPPEIELKPLP 176

[Close]

BLAST of PI0013614.1 vs. ExPASy TrEMBL
Match: A0A5D3C0Z2 (Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00690 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 10  FPSD-ESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSERKSEPLSM 69
           FP D ESC+AIE LGWDYCEEEA   L S +EF E+    + ++ VN VS + K E L +
Sbjct: 110 FPIDVESCNAIECLGWDYCEEEAYYELFSTKEFLEEDKPYYILKEVNTVSGKNKFESLDL 169

Query: 70  STRGEERIKPSTEEPPKLKLKPLP 89
            T+GE + + S EEPPKL+LKPLP
Sbjct: 170 QTKGENKTQASIEEPPKLELKPLP 193

[Close]

BLAST of PI0013614.1 vs. ExPASy TrEMBL
Match: A0A5A7T4Y2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001390 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 9   KFPS-DESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSERKSEPLS 68
           +FP+ DE+ SAIESL WDYCEEE    L + EEFFE+    + ++ VN VS ER  E L 
Sbjct: 113 EFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESLD 172

Query: 69  MSTRGEERIKPSTEEPPKLKLKPLP 89
           + T+G+++ KPS EEPPKL+LK LP
Sbjct: 173 LQTKGKKKTKPSIEEPPKLELKHLP 197

[Close]

BLAST of PI0013614.1 vs. ExPASy TrEMBL
Match: A0A5D3DQS7 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001060 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 8  MKFPSD-ESCSAIESLGWDYCEEEASTLLSL-EEFF--EDLHEIE-SVNAVSSERKSEPL 67
          MKFPS+ E+C+AI+SLGWDYCEEE  T L + EEFF  ED + I+  VN VS  RK E  
Sbjct: 1  MKFPSNVENCNAIKSLGWDYCEEEVLTKLFIPEEFFKEEDSYYIQKEVNVVSGTRKFEAS 60

Query: 68 SMSTRGEERIKPSTEEPPKLKLKPLP 89
             T+G  + K S EE P+L+LKPLP
Sbjct: 61 DQQTKGNRKNKSSIEESPELELKPLP 86

[Close]

BLAST of PI0013614.1 vs. NCBI nr
Match: KAA0040851.1 (hypothetical protein E6C27_scaffold333G00760 [Cucumis melo var. makuwa] >TYK17827.1 hypothetical protein E5676_scaffold306G00790 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-11
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 2   FNVANAMKFPSD-ESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSE 61
           FN+ N MKF +D ++   IESLGWDY EEE  + L SL+EFFE+    + +E V+ VSS 
Sbjct: 10  FNIVNVMKFLADVKNYIMIESLGWDYFEEEVLAELFSLKEFFEEEDLYYTLEEVDVVSSG 69

Query: 62  RKSEPLSMSTRGEERIKPSTEEPPKLKLKPL 88
           RK EP  M T+G+++ K S EEPP+L+LKPL
Sbjct: 70  RKFEPFDMQTKGDKKNKISIEEPPELELKPL 100

[Close]

BLAST of PI0013614.1 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-11
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 2   FNVANAMKFP-SDESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSE 61
           FN   +MKFP +D   +AIESLGWDYC+EE    L S EEFFE+    + +E VN +  +
Sbjct: 85  FNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYILEEVNVMLGK 144

Query: 62  RKSEPLSMSTRGEERIKPSTEEPPKLKLKPLP 89
            K E L + T+G+++IK S EEPP+++LKPLP
Sbjct: 145 TKFESLDLKTKGKKKIKSSIEEPPEIELKPLP 176

[Close]

BLAST of PI0013614.1 vs. NCBI nr
Match: KAA0040570.1 (uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK05613.1 uncharacterized protein E5676_scaffold98G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-11
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 10  FPSD-ESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSERKSEPLSM 69
           FP D ESC+AIE LGWDYCEEEA   L S +EF E+    + ++ VN VS + K E L +
Sbjct: 110 FPIDVESCNAIECLGWDYCEEEAYYELFSTKEFLEEDKPYYILKEVNTVSGKNKFESLDL 169

Query: 70  STRGEERIKPSTEEPPKLKLKPLP 89
            T+GE + + S EEPPKL+LKPLP
Sbjct: 170 QTKGENKTQASIEEPPKLELKPLP 193

[Close]

BLAST of PI0013614.1 vs. NCBI nr
Match: KAA0038053.1 (uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK20551.1 uncharacterized protein E5676_scaffold237G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 9   KFPS-DESCSAIESLGWDYCEEEA-STLLSLEEFFED---LHEIESVNAVSSERKSEPLS 68
           +FP+ DE+ SAIESL WDYCEEE    L + EEFFE+    + ++ VN VS ER  E L 
Sbjct: 113 EFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESLD 172

Query: 69  MSTRGEERIKPSTEEPPKLKLKPLP 89
           + T+G+++ KPS EEPPKL+LK LP
Sbjct: 173 LQTKGKKKTKPSIEEPPKLELKHLP 197

[Close]

BLAST of PI0013614.1 vs. NCBI nr
Match: TYK25882.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 8  MKFPSD-ESCSAIESLGWDYCEEEASTLLSL-EEFF--EDLHEIE-SVNAVSSERKSEPL 67
          MKFPS+ E+C+AI+SLGWDYCEEE  T L + EEFF  ED + I+  VN VS  RK E  
Sbjct: 1  MKFPSNVENCNAIKSLGWDYCEEEVLTKLFIPEEFFKEEDSYYIQKEVNVVSGTRKFEAS 60

Query: 68 SMSTRGEERIKPSTEEPPKLKLKPLP 89
             T+G  + K S EE P+L+LKPLP
Sbjct: 61 DQQTKGNRKNKSSIEESPELELKPLP 86

The following BLAST results are available for this feature:

BLAST of PI0013614.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013614.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGQ9	7.5e-12	52.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UE99	1.7e-11	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C0Z2	2.8e-11	54.76	Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T4Y2	6.3e-11	54.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DQS7	1.8e-10	55.81	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of PI0013614.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040851.1	1.5e-11	52.75	hypothetical protein E6C27_scaffold333G00760 [Cucumis melo var. makuwa] >TYK1782...	[more]
KAA0054122.1	3.4e-11	50.00	uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa]	[more]
KAA0040570.1	5.9e-11	54.76	uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0038053.1	1.3e-10	54.12	uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK25882.1	3.8e-10	55.81	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0013614.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0013614	PI0013614	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013614.1-exon	PI0013614.1-exon-chr08:10165513..10166022	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013614.1-cds	PI0013614.1-cds-chr08:10165513..10166022	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0013614.1	PI0013614.1-protein	polypeptide