PI0013253.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0013253.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein MNN4-like
Locationchr10: 10844545 .. 10845093 (-)
Sequence length549
RNA-Seq ExpressionPI0013253.1
SyntenyPI0013253.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATTTGGGCCAAAGAAGAAAGCAAAAAAATATAAGGCCAAGGACTCTAGTGACCGTCTTCCCTTGCAATAGAAACTTTGCCTGGACCTCAAATTCACAAAACCACCATTTTGCCCTCGCCTTCCTAAACTCTCAAAGCACCACCACTTCCTTCCATTATCCAAATTCCATCTCCCCAAAAATCCAAATCACCAAGTCTTTCCTGTCAAATCCAAATTATCACCACTACTACTATCCTCAGCGGCAAGAGGAAAATCCTCAATCTCTTGTCGCAGATTTACATGACCAAACCACTGCATCGCCAAATGAAGATCATGAATCCCAATTTAACCAAGGGATACATGATTTTATCCAAGACCTCTACGATCCACAATTTGAAGTTGAAGAAGTGCTGAGGAATCTAGAGAATGCGACCCTAGTTCCTATTGGGCCGCGCGATGAAGAAGTCTTGGAGGAGGCAGTTGATGACCCACTCCCGAAAGGAAAGGAAATCGCCTTTGGGGAAGCTGGTGAGAGCATGCTCCCTCATCGCCTAAGCAAATAG

mRNA sequence

ATGAGGCATTTGGGCCAAAGAAGAAAGCAAAAAAATATAAGGCCAAGGACTCTAGTGACCGTCTTCCCTTGCAATAGAAACTTTGCCTGGACCTCAAATTCACAAAACCACCATTTTGCCCTCGCCTTCCTAAACTCTCAAAGCACCACCACTTCCTTCCATTATCCAAATTCCATCTCCCCAAAAATCCAAATCACCAAGTCTTTCCTGTCAAATCCAAATTATCACCACTACTACTATCCTCAGCGGCAAGAGGAAAATCCTCAATCTCTTGTCGCAGATTTACATGACCAAACCACTGCATCGCCAAATGAAGATCATGAATCCCAATTTAACCAAGGGATACATGATTTTATCCAAGACCTCTACGATCCACAATTTGAAGTTGAAGAAGTGCTGAGGAATCTAGAGAATGCGACCCTAGTTCCTATTGGGCCGCGCGATGAAGAAGTCTTGGAGGAGGCAGTTGATGACCCACTCCCGAAAGGAAAGGAAATCGCCTTTGGGGAAGCTGGTGAGAGCATGCTCCCTCATCGCCTAAGCAAATAG

Coding sequence (CDS)

ATGAGGCATTTGGGCCAAAGAAGAAAGCAAAAAAATATAAGGCCAAGGACTCTAGTGACCGTCTTCCCTTGCAATAGAAACTTTGCCTGGACCTCAAATTCACAAAACCACCATTTTGCCCTCGCCTTCCTAAACTCTCAAAGCACCACCACTTCCTTCCATTATCCAAATTCCATCTCCCCAAAAATCCAAATCACCAAGTCTTTCCTGTCAAATCCAAATTATCACCACTACTACTATCCTCAGCGGCAAGAGGAAAATCCTCAATCTCTTGTCGCAGATTTACATGACCAAACCACTGCATCGCCAAATGAAGATCATGAATCCCAATTTAACCAAGGGATACATGATTTTATCCAAGACCTCTACGATCCACAATTTGAAGTTGAAGAAGTGCTGAGGAATCTAGAGAATGCGACCCTAGTTCCTATTGGGCCGCGCGATGAAGAAGTCTTGGAGGAGGCAGTTGATGACCCACTCCCGAAAGGAAAGGAAATCGCCTTTGGGGAAGCTGGTGAGAGCATGCTCCCTCATCGCCTAAGCAAATAG

Protein sequence

MRHLGQRRKQKNIRPRTLVTVFPCNRNFAWTSNSQNHHFALAFLNSQSTTTSFHYPNSISPKIQITKSFLSNPNYHHYYYPQRQEENPQSLVADLHDQTTASPNEDHESQFNQGIHDFIQDLYDPQFEVEEVLRNLENATLVPIGPRDEEVLEEAVDDPLPKGKEIAFGEAGESMLPHRLSK
Homology
[Close]
BLAST of PI0013253.1 vs. ExPASy TrEMBL
Match: A0A5D3BSJ3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G00050 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 83  RQEENPQSLVADLHDQTTASPNEDHESQFNQG---IHDFIQD-LYDPQFEVEEVLRNLEN 142
           RQEENPQ+LV D  D TT      ++S  +QG     D  +D LYDP   + +V ++  +
Sbjct: 303 RQEENPQTLVVDFLDPTTIPIPNLNDSPVDQGDDAFQDMFEDSLYDPLTLIHKVFKDPVD 362

Query: 143 ATLVPIGPRDEEVLEEAVDDPLPKGKEIAFGEAGES---MLPHRLSK 183
             L P+G  ++EVLE+AVDDPL KGK+I+  E GE+    LP + SK
Sbjct: 363 VALSPVGSLNKEVLEKAVDDPLLKGKQISSKEVGEARPLSLPKQTSK 409

[Close]
BLAST of PI0013253.1 vs. NCBI nr
Match: KAA0053481.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 83  RQEENPQSLVADLHDQTTASPNEDHESQFNQG---IHDFIQD-LYDPQFEVEEVLRNLEN 142
           RQEENPQ+LV D  D TT      ++S  +QG     D  +D LYDP   + +V ++  +
Sbjct: 303 RQEENPQTLVVDFLDPTTIPIPNLNDSPVDQGDDAFQDMFEDSLYDPLTLIHKVFKDPVD 362

Query: 143 ATLVPIGPRDEEVLEEAVDDPLPKGKEIAFGEAGES---MLPHRLSK 183
             L P+G  ++EVLE+AVDDPL KGK+I+  E GE+    LP + SK
Sbjct: 363 VALSPVGSLNKEVLEKAVDDPLLKGKQISSKEVGEARPLSLPKQTSK 409

The following BLAST results are available for this feature:
BLAST of PI0013253.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0013253.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BSJ31.7e-0943.93Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G... [more]
BLAST of PI0013253.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053481.13.5e-0943.93protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucu... [more]
BLAST of PI0013253.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..182

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0013253PI0013253gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0013253.1-exonPI0013253.1-exon-chr10:10844545..10845093exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0013253.1-cdsPI0013253.1-cds-chr10:10844545..10845093CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0013253.1PI0013253.1-proteinpolypeptide