PI0013024.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0013024.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 18696964 .. 18697810 (-)
Sequence length	360
RNA-Seq Expression	PI0013024.1
Synteny	PI0013024.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTCTTCTTACTTCTTTTATGGAAGGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGACTTGATCGAGGATGTGAATGTCATTCGTAAGTATGACCCCCATGGTAATACATATAATTCCGGATGAAGAGACAACCCAAACTTGAGATGGGGGAATGACAACAAAAAATCTACCCAAGCAACATCCTTCTCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACCAGCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTTCGGCCTTTTCAAAGATGATAGGGCTAGCGTCTAGTGGGTTCGGTTAGAATGTGGAGCGAAAGTGCATTGAGGTAGAGAAATCGGTGTTTGATGAGAGGATTAAGGTAAGATGAAGAACATATACTTTCTATAAGAATATAATATAAAATACTAACATCTGTTAACTCCATGCAGAGACACCCTAATGCTTGAAGACTACTAAACAAACCATTCCCTTACTTCGATGACTTGAAAATTGTGTTTGGTAGGGATAGAGCTACTGGTGGTAGATGTAAGATATCTCTTGACATAGGATTACAAGTTACTACAAAATATATGGAGGAAGGTGACATGGACATTAATATAAAAGATTTTGATATACCAAATCCACATGGACTTGAGCCTACATCAGGGAAGGACATGCCATCTACTCCTACAAGCAGGGCACATGGTGCAAAATCGTCCAAACCAAATCAGAAAAGGCAGGCATATTCATGA

mRNA sequence

ATGACTACTCTTCTTACTTCTTTTATGGAAGGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGACTTGATCGAGGATGTGAATGTCATTCGTAAGGATAGAGCTACTGGTGGTAGATGTAAGATATCTCTTGACATAGGATTACAAGTTACTACAAAATATATGGAGGAAGGTGACATGGACATTAATATAAAAGATTTTGATATACCAAATCCACATGGACTTGAGCCTACATCAGGGAAGGACATGCCATCTACTCCTACAAGCAGGGCACATGGTGCAAAATCGTCCAAACCAAATCAGAAAAGGCAGGCATATTCATGA

Coding sequence (CDS)

ATGACTACTCTTCTTACTTCTTTTATGGAAGGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGACTTGATCGAGGATGTGAATGTCATTCGTAAGGATAGAGCTACTGGTGGTAGATGTAAGATATCTCTTGACATAGGATTACAAGTTACTACAAAATATATGGAGGAAGGTGACATGGACATTAATATAAAAGATTTTGATATACCAAATCCACATGGACTTGAGCCTACATCAGGGAAGGACATGCCATCTACTCCTACAAGCAGGGCACATGGTGCAAAATCGTCCAAACCAAATCAGAAAAGGCAGGCATATTCATGA

Protein sequence

MTTLLTSFMEGGPLKVTKCGVCGLVGHPNDKCPDLIEDVNVIRKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDFDIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS

Homology

[Close]

BLAST of PI0013024.1 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-20
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ ++  +DRATGGRCK  +++GLQ+  +  EE DMDIN++DF
Sbjct: 31  GHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQI-ARDTEEDDMDINLEDF 90

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DM STPTS AH   SSKP++KR++YS
Sbjct: 91  DIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYS 129

[Close]

BLAST of PI0013024.1 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-20
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ ++  +DRATGGRCK  +++GLQ+  +  EE DMDIN++DF
Sbjct: 30  GHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQI-ARDTEEDDMDINLEDF 89

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DM STPTS AH   SSKP++KR++YS
Sbjct: 90  DIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYS 128

[Close]

BLAST of PI0013024.1 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ V+  +DRATGGRCK  +++  Q T +  EE DMDIN++DF
Sbjct: 222 GHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQ-TARDTEEDDMDINLEDF 281

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DMPSTPTS  H A SS+P++KR++YS
Sbjct: 282 DIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYS 320

[Close]

BLAST of PI0013024.1 vs. ExPASy TrEMBL
Match: A0A5A7T590 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00100 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.4e-19
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 19  CGVCGLVGHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDM 78
           C + GL  HPN     +K      D+ ++  +DRATGGRCK  +++GLQ TT+  E+ DM
Sbjct: 13  CSITGL-RHPNARDLLNKLFPYFYDLEIVFGRDRATGGRCKTPVEMGLQ-TTRNTEKDDM 72

Query: 79  DINIKDFDIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIN++DFDIPNPHGLEP SG+DM STPTS  H A+SS+ ++KR++YS
Sbjct: 73  DINLEDFDIPNPHGLEPLSGEDMLSTPTSMTHDAESSRLSKKRRSYS 117

[Close]

BLAST of PI0013024.1 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.6e-19
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ ++  +DRATGGRCK  +++GLQ+  +  EE DMDIN++DF
Sbjct: 31  GHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPVEMGLQI-ARDTEEDDMDINLEDF 90

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DM STPTS A+   SS+P++KR++YS
Sbjct: 91  DIPNPHGLEPPSGEDMSSTPTSMAYDVGSSRPSKKRRSYS 129

[Close]

BLAST of PI0013024.1 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ ++  +DRATGGRCK  +++GLQ+  +  EE DMDIN++DF
Sbjct: 30  GHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQI-ARDTEEDDMDINLEDF 89

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DM STPTS AH   SSKP++KR++YS
Sbjct: 90  DIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYS 128

[Close]

BLAST of PI0013024.1 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ ++  +DRATGGRCK  +++GLQ+  +  EE DMDIN++DF
Sbjct: 31  GHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQI-ARDTEEDDMDINLEDF 90

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DM STPTS AH   SSKP++KR++YS
Sbjct: 91  DIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYS 129

[Close]

BLAST of PI0013024.1 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-19
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ V+  +DRATGGRCK  +++  Q T +  EE DMDIN++DF
Sbjct: 222 GHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQ-TARDTEEDDMDINLEDF 281

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DMPSTPTS  H A SS+P++KR++YS
Sbjct: 282 DIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYS 320

[Close]

BLAST of PI0013024.1 vs. NCBI nr
Match: KAA0038163.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK31532.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 7.0e-19
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 19  CGVCGLVGHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDM 78
           C + GL  HPN     +K      D+ ++  +DRATGGRCK  +++GLQ TT+  E+ DM
Sbjct: 13  CSITGL-RHPNARDLLNKLFPYFYDLEIVFGRDRATGGRCKTPVEMGLQ-TTRNTEKDDM 72

Query: 79  DINIKDFDIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIN++DFDIPNPHGLEP SG+DM STPTS  H A+SS+ ++KR++YS
Sbjct: 73  DINLEDFDIPNPHGLEPLSGEDMLSTPTSMTHDAESSRLSKKRRSYS 117

[Close]

BLAST of PI0013024.1 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 26  GHPN-----DKCPDLIEDVNVI-RKDRATGGRCKISLDIGLQVTTKYMEEGDMDINIKDF 85
           GHPN     +K      D+ ++  +DRATGGRCK  +++GLQ+  +  EE DMDIN++DF
Sbjct: 31  GHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPVEMGLQI-ARDTEEDDMDINLEDF 90

Query: 86  DIPNPHGLEPTSGKDMPSTPTSRAHGAKSSKPNQKRQAYS 120
           DIPNPHGLEP SG+DM STPTS A+   SS+P++KR++YS
Sbjct: 91  DIPNPHGLEPPSGEDMSSTPTSMAYDVGSSRPSKKRRSYS 129

The following BLAST results are available for this feature:

BLAST of PI0013024.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013024.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGQ0	5.3e-20	56.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	5.3e-20	56.00	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]
A0A5D3C7T4	2.0e-19	56.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T590	3.4e-19	53.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CKC1	7.6e-19	54.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0013024.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460440.1	1.1e-19	56.00	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	1.1e-19	56.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	4.1e-19	56.00	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
KAA0038163.1	7.0e-19	53.27	retrotransposon protein [Cucumis melo var. makuwa] >TYK31532.1 retrotransposon p...	[more]
TYK10886.1	1.6e-18	54.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0013024.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0013024	PI0013024	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013024.1-exon	PI0013024.1-exon-chr06:18696964..18697192	exon
PI0013024.1-exon	PI0013024.1-exon-chr06:18697680..18697810	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013024.1-cds	PI0013024.1-cds-chr06:18696964..18697192	CDS
PI0013024.1-cds	PI0013024.1-cds-chr06:18697680..18697810	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0013024.1	PI0013024.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034470	ncRNA processing
biological_process	GO:0001510	RNA methylation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding