PI0012975.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0012975.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 22906717 .. 22907243 (-)
Sequence length	527
RNA-Seq Expression	PI0012975.1
Synteny	PI0012975.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGAAACTCACTCTCTCTCTGTCTCTCTCTCTCTTAATTTGCCCTTTTTGTGGGATTGTGTTTGGAGAAATGCCCTCTTCGACTACAAATAACCCACCAAAAAGAGGTAAAATTATGGCTAAAATTGGTGAGGATTTGGCCACGTCAGCAGCCACTGCAGCATCCTACGTAGCCGCCGCCCTGGCCGGACTCATCCCGGATCGTCCTCCGCCGGATCATGCTCCGCCGCACCCTCCGCCCCCTGCCGGTGGCGGTGCATAGGCCTTCCTCACAACTTTATGAAATAAATTAAACAGCTACTTTATTTTGTTTCATTGACCAACAATTTATCCCCTAATTACCTAATGTAAATTACATGTAAATTAATTCTTATGAGTTTTCTTTTTTTTTTCCTTCTTTCTTCTTTTTTTTTTTTTTCTGGTAATTTTGAGCTCAATTTCTTGTTGGTTCAATGATCAGAATTTCCTAGCATGCTGTAATTATTATTGTATATATGTAAATAAAAAAGTGTGTGCTTTATTTTAA

mRNA sequence

CTTAGAAACTCACTCTCTCTCTGTCTCTCTCTCTCTTAATTTGCCCTTTTTGTGGGATTGTGTTTGGAGAAATGCCCTCTTCGACTACAAATAACCCACCAAAAAGAGGTAAAATTATGGCTAAAATTGGTGAGGATTTGGCCACGTCAGCAGCCACTGCAGCATCCTACGTAGCCGCCGCCCTGGCCGGACTCATCCCGGATCGTCCTCCGCCGGATCATGCTCCGCCGCACCCTCCGCCCCCTGCCGGTGGCGGTGCATAGGCCTTCCTCACAACTTTATGAAATAAATTAAACAGCTACTTTATTTTGTTTCATTGACCAACAATTTATCCCCTAATTACCTAATGTAAATTACATGTAAATTAATTCTTATGAGTTTTCTTTTTTTTTTCCTTCTTTCTTCTTTTTTTTTTTTTTCTGGTAATTTTGAGCTCAATTTCTTGTTGGTTCAATGATCAGAATTTCCTAGCATGCTGTAATTATTATTGTATATATGTAAATAAAAAAGTGTGTGCTTTATTTTAA

Coding sequence (CDS)

ATGCCCTCTTCGACTACAAATAACCCACCAAAAAGAGGTAAAATTATGGCTAAAATTGGTGAGGATTTGGCCACGTCAGCAGCCACTGCAGCATCCTACGTAGCCGCCGCCCTGGCCGGACTCATCCCGGATCGTCCTCCGCCGGATCATGCTCCGCCGCACCCTCCGCCCCCTGCCGGTGGCGGTGCATAG

Protein sequence

MPSSTTNNPPKRGKIMAKIGEDLATSAATAASYVAAALAGLIPDRPPPDHAPPHPPPPAGGGA

Homology

[Close]

BLAST of PI0012975.1 vs. ExPASy TrEMBL
Match: A0A0A0LX95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MPSSTTNNPPKRGKIMAKIGEDLATSAATAASYVAAALAGLIPDRPPPDHAPPHPPPPAG 60
          MPSST NNPP+RG+IMAKIGEDLATSAATAASYV AALAGLIPD PPP HAPP PPPPAG
Sbjct: 1  MPSSTANNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]

BLAST of PI0012975.1 vs. ExPASy TrEMBL
Match: A0A5D3BXB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00050 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.2e-16
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MPSSTTNNPPKRGKIMAKIGEDLATSAATAASYVAAALAGLIPDRPPPDHAPP 54
          MPSST NNPPKRGKI AKIGEDLATSAATAASYV AALAGLIPDRPPP+H PP
Sbjct: 1  MPSSTANNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

[Close]

BLAST of PI0012975.1 vs. NCBI nr
Match: KGN65654.1 (hypothetical protein Csa_019816 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MPSSTTNNPPKRGKIMAKIGEDLATSAATAASYVAAALAGLIPDRPPPDHAPPHPPPPAG 60
          MPSST NNPP+RG+IMAKIGEDLATSAATAASYV AALAGLIPD PPP HAPP PPPPAG
Sbjct: 1  MPSSTANNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]

BLAST of PI0012975.1 vs. NCBI nr
Match: TYK02876.1 (hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-16
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MPSSTTNNPPKRGKIMAKIGEDLATSAATAASYVAAALAGLIPDRPPPDHAPP 54
          MPSST NNPPKRGKI AKIGEDLATSAATAASYV AALAGLIPDRPPP+H PP
Sbjct: 1  MPSSTANNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

The following BLAST results are available for this feature:

BLAST of PI0012975.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012975.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX95	1.1e-19	88.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1	[more]
A0A5D3BXB9	3.2e-16	90.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0012975.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65654.1	2.2e-19	88.71	hypothetical protein Csa_019816 [Cucumis sativus]	[more]
TYK02876.1	6.6e-16	90.57	hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa]	[more]

BLAST of PI0012975.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0012975	PI0012975	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012975.1-exon	PI0012975.1-exon-chr12:22906717..22907243	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012975.1-three_prime_utr	PI0012975.1-three_prime_utr-chr12:22906717..22906980	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012975.1-cds	PI0012975.1-cds-chr12:22906981..22907172	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012975.1-five_prime_utr	PI0012975.1-five_prime_utr-chr12:22907173..22907243	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0012975.1	PI0012975.1-protein	polypeptide