PI0012956.2 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0012956.2
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Rep_fac-A_C domain-containing protein
Location	chr11: 5499040 .. 5501959 (-)
Sequence length	874
RNA-Seq Expression	PI0012956.2
Synteny	PI0012956.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAAACACCCCTAGCGGTATAGAAATTTTCGTCCCCCCCCCCCCCGAAACAGTGTGCAGAACAGTGTTGTATTTTCAGTTTTCAGGATCGAAGGCAGTTTCCTTTAGAGGAGTAATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGCTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTGAACGCCTTTAATCCCGGTTCTTCCTCCTCCAAACGCGTCTTCCGTCTTCTTGTGAGTATTTCCGTTTTTTTCTTACTTGGGAATTTGATTTCAGTATGTGTGAAAATCTCTTATGATGTTCTTGTAGTTGGAATTCCGCTTGAGATTTGAATGGGGAAATTTTCGTGTTTTGTTTGTTTTTGAGTGTTAATTCATTGTGGGGACACGATTATATGTCTTTTGGAGGAAATGTTTTGTTCTGTAACATGGGTTTGGGCTTGTACATTGCATTGTGTTCTTTACATCGAGGTTCTGATTTTGGGTCCTGTATTTCCATTGTTTTTTGGGCAGATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGGTAAAATCCCCTTTGTATTTGTGAGTTACTTCTAATCGGTTTGCATGAGATTCTCCTTCAATGGACATAAAGGATTTAGAACGAGAGGCATTTTATTTTTTCAAGAAACTTTCATTAAACACCCTTTGCCTAAGAGAAGATGCTCGGAGAATACGTTACTAATACAATTTGTGGGGAAATTTTTTAGTTCCTTAATCTTCCTTCACCGAAGCTGTTTCGTTTCCTCTTGATTGTTAGTTGAATTCTTGTTGCGTACTTGCAGCTAAAACTGTAAGTGAAATTCTGGAGGGAGAGATGTTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCAGGTTTTCAACCAGCAATTATTAGACTGAGGGAATTGTATGGGGTAAGAAGCTGTGTTAATTTTCCTTCCTTTGTGATTAGTACTTACTTCTTATTATGCATTTTCCCACATGCCTTTTCTCTTTCTCGACAGACTATCATTTGGGGTTCCAACTGTCATCTAGGTTTGGGTTTTTAGATAACATGATTTTCTATCTCAAAACCAATTGACAATGACTCATATATCTTATAAATTTGAGGTCCCTTGATTTTTTCAATGTTAGGATCCTCAACACACCATCTCATGAAAATGCCTCTTTAGATTCACTATTCTTGATTTCTTTTTGGACTGAATGCTTGTTTGGGTTCCATGAATTTTGATATCATATTAGATAACATGGGTTCACATCTATCTTATAAACATTGTGAGGTCCTTTGATTTTTCTAATGTGTGATACTCAACATGCGTGAATGTTTAGGCAGCATATAAGATCCAAAATCTAAACAACTCTCGCGGATAAATGTAATCTCTATTGATTGATGTAAATATTATTTTTACTATCTAAAAGGTGTATAACGCGCTGAAGATCACTATTTCAGATATTAGGGAATTGAGATGCATCAATACTTATTTATATAGGGAGGGAGGGAAGTAAAACGAGCTAGTTCCTTGTAGGTGTTCTAAGAGAGATATGGAAGCACTTGAATTCTCCTTAGCTGTATTGCAATTGCTATTGCTGTAGTTTTGATTATTTCGTAGGGTGTATCTATAGCAAAGGACATTACGTAGAAATAAAATTTATTGAAGTGGTTTTGAGATTTCATGTTCTAAAGTGGAACTATAATAACTTGATATGAATTATGTTGTAAGAAAAGACTCAAGTTAAGCTCCAACGTATGAAATAATCTGGTGTCTTTTACATTTTTAATTGTAAACACCCAATCCTTTTGCTTTTCCACAGAACAAGAGCTAGTATAACATTGTCTTTGCCCGGTGAGCGTCTGTGGAGCTGCACTATGGGATTTTCATTTTATCCATCAAAACAAAAAGAAGCATCAAATTCAAGGCTGACCCTTTATCTAAGCTCCATTCTTCTTTGTCAAATGTTACAAAATTGAGCTTAAATGAGCCGATGTGTGAAATTGTCCCTTCAGCTTCTTTATCTTTTCAATTTAGTTATGTATAGTGCTCAAACATCTCCTCTCAACCTCTTGACATTGTAGCAGCCACTAGTAAAATCTGTTCCGTTTGTAACTAACTTATCTGTATCCCTTGTTCTGAAACAGTTAAACTTCGTAGATATTCCTTGAGTGCAATACTGATCTAACTGATATTTTATGAGTTCCGTAAGAACAAAAATTTGGGTTTAAATGATAAAAGTTACTCCAAAAGAGAGTTGAAATTGAAATCACTGGTGTAGAATATGATAGATCAGTTAGTTTTTCTTGACTTGTTTTTGGTTGGCCAGGTATCTCATGATATATATTTTTATAGTTGAAATATTCATTTCTAATAAAATAAAATAGTTTGACATATACATACAAATGTGTACTTGATTTTGTTTGCAGAGTAAATTCCATTTGATAATTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAATAACCTAATCCCATCCCATCCCAACATTGTTTGCATTTTTGCTATCATTTAGAATGGACAATATTTTGTCATTTGATGTGATTTTGTGTGCAGTGGAGAGGATTATTGTAACATGAAAGGAAGAAGAAGGTTGGCAAAGTTTACCAATCTATATCGAAAAGTGGTGTATTTGTAATGAAATTTTAT

mRNA sequence

AACAAAAACACCCCTAGCGGTATAGAAATTTTCGTCCCCCCCCCCCCCGAAACAGTGTGCAGAACAGTGTTGTATTTTCAGTTTTCAGGATCGAAGGCAGTTTCCTTTAGAGGAGTAATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGCTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTGAACGCCTTTAATCCCGGTTCTTCCTCCTCCAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTAAAACTGTAAGTGAAATTCTGGAGGGAGAGATGTTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCAGGTTTTCAACCAGCAATTATTAGACTGAGGGAATTGTATGGGAGTAAATTCCATTTGATAATTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAATAACCTAATCCCATCCCATCCCAACATTGTTTGCATTTTTGCTATCATTTAGAATGGACAATATTTTGTCATTTGATGTGATTTTGTGTGCAGTGGAGAGGATTATTGTAACATGAAAGGAAGAAGAAGGTTGGCAAAGTTTACCAATCTATATCGAAAAGTGGTGTATTTGTAATGAAATTTTAT

Coding sequence (CDS)

ATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGCTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTGAACGCCTTTAATCCCGGTTCTTCCTCCTCCAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTAAAACTGTAAGTGAAATTCTGGAGGGAGAGATGTTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCAGGTTTTCAACCAGCAATTATTAGACTGAGGGAATTGTATGGGAGTAAATTCCATTTGATAATTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGATGTGA

Protein sequence

MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVKEM

Homology

[Close]

BLAST of PI0012956.2 vs. ExPASy TrEMBL
Match: A0A6J1FWW9 (uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 154/182 (84.62%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LTKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. ExPASy TrEMBL
Match: A0A6J1FXT2 (uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 154/182 (84.62%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LTKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. ExPASy TrEMBL
Match: A0A6J1J8M2 (uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.5e-79
Identity = 153/182 (84.07%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN K ITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LAKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. ExPASy TrEMBL
Match: A0A1S3CNQ4 (uncharacterized protein LOC103503028 OS=Cucumis melo OX=3656 GN=LOC103503028 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.9e-79
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MENGKPITTMCAVIAMDYTNFCYRVCSICERTLP NPSSSLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAA+TVSEIL GEMFRIT
Sbjct: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG 157
           ISKPKNGNAQHSRVVQIVPLSS FQPAIIRLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 156

[Close]

BLAST of PI0012956.2 vs. ExPASy TrEMBL
Match: A0A0A0KEN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147650 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.5e-78
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MENGKPITTMCAV+AMDYTNFCYRVCSICERTLP NP SSLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+TVSEILEGEM RIT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG 157
           ISKPKNGNAQHSRVVQIVPLSS FQPAIIRLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 155

[Close]

BLAST of PI0012956.2 vs. NCBI nr
Match: XP_022943427.1 (uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_022943428.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >KAG7010655.1 hypothetical protein SDJN02_27450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80
Identity = 154/182 (84.62%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LTKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. NCBI nr
Match: XP_022943430.1 (uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata])

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80
Identity = 154/182 (84.62%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LTKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. NCBI nr
Match: XP_023512879.1 (uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 4.2e-79
Identity = 154/182 (84.62%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNP SSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPCSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LTKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. NCBI nr
Match: XP_022985581.1 (uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima])

HSP 1 Score: 304.3 bits (778), Expect = 7.2e-79
Identity = 153/182 (84.07%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MEN K ITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAA+ VSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHK 180
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG-----LAKVSSAVGNGQNMHSSKK 177

Query: 181 VK 183
            K
Sbjct: 181 QK 177

[Close]

BLAST of PI0012956.2 vs. NCBI nr
Match: XP_008465398.1 (PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRV 60
           MENGKPITTMCAVIAMDYTNFCYRVCSICERTLP NPSSSLCKFCN NAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRIT 120
           FRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAA+TVSEIL GEMFRIT
Sbjct: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG 157
           ISKPKNGNAQHSRVVQIVPLSS FQPAIIRLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 156

[Close]

BLAST of PI0012956.2 vs. TAIR 10
Match: AT2G28105.1 (CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-43
Identity = 83/151 (54.97%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 8   TTMCAVIAMDYTNFCYRVCSICERTLPAN----PSSSLCKFCNLNAFNPGSSSSKRVFRL 67
           T +C ++A+D T++CYRVCS C+R LP++     SSS CKFC        S   K ++R+
Sbjct: 6   TVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFCK-------SKEPKLLYRI 65

Query: 68  LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSEILEGEMFRITISK 127
           LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P AA  V+++ +GEM R+T+++
Sbjct: 66  LMSIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEMLRMTLTR 125

Query: 128 PKNGNAQHSRVVQIVPLSSGFQPAIIRLREL 155
           P+N NAQH RV  +VPL SG QPAI+ LR++
Sbjct: 126 PQNRNAQHMRVASVVPLRSGVQPAIVTLRQI 149

The following BLAST results are available for this feature:

BLAST of PI0012956.2 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012956.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWW9	3.1e-80	84.62	uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FXT2	3.1e-80	84.62	uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J8M2	3.5e-79	84.07	uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3CNQ4	5.9e-79	95.51	uncharacterized protein LOC103503028 OS=Cucumis melo OX=3656 GN=LOC103503028 PE=...	[more]
A0A0A0KEN7	8.5e-78	95.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147650 PE=4 SV=1	[more]

BLAST of PI0012956.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943427.1	6.5e-80	84.62	uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_0229434...	[more]
XP_022943430.1	6.5e-80	84.62	uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]	[more]
XP_023512879.1	4.2e-79	84.62	uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022985581.1	7.2e-79	84.07	uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima]	[more]
XP_008465398.1	1.2e-78	95.51	PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]	[more]

BLAST of PI0012956.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28105.1	1.8e-43	54.97	CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR0160...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..142 e-value: 5.0E-14 score: 54.0
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0012956	PI0012956	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012956.2-exon	PI0012956.2-exon-chr11:5499040..5499328	exon
PI0012956.2-exon	PI0012956.2-exon-chr11:5500834..5500988	exon
PI0012956.2-exon	PI0012956.2-exon-chr11:5501251..5501371	exon
PI0012956.2-exon	PI0012956.2-exon-chr11:5501651..5501959	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012956.2-three_prime_utr	PI0012956.2-three_prime_utr-chr11:5499040..5499241	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012956.2-cds	PI0012956.2-cds-chr11:5499242..5499328	CDS
PI0012956.2-cds	PI0012956.2-cds-chr11:5500834..5500988	CDS
PI0012956.2-cds	PI0012956.2-cds-chr11:5501251..5501371	CDS
PI0012956.2-cds	PI0012956.2-cds-chr11:5501651..5501842	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012956.2-five_prime_utr	PI0012956.2-five_prime_utr-chr11:5501843..5501959	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0012956.2	PI0012956.2-protein	polypeptide