PI0012644.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0012644.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr06: 18117105 .. 18117609 (+)
Sequence length	381
RNA-Seq Expression	PI0012644.1
Synteny	PI0012644.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGATAGCAATAGAAGAAATCGTCATTGGAAGAGACCTTCGAAGAAAGGAAAGGCATCAGGTGATGATTCCTGTGGAAGGGGCTAAAGTGCTATGGGAATTCCTAACGTTCCAACACACTAGTTCGCATATTTTCTTCCCTTAATTTTTTTCATGGATAATTTATTTATTACTTATTTCTGCAGTCACCTTTGGACGATCATTTTCAAGGACTTGTAGAGCTATGTAGTGATGGCTCTTTGATAGGGCCTCATGTTGTGGATTCGACCCTTGAAGAAGTTAGTACCTCAAAGACATTAGTTGCCAAACTAGCTGAACAATCCTTACATCCTCCTCTTCTTCTCGAAGAGATTCGTCGAGGCAAGATGAAGGTGAATGGAAAAGACATCGAAATTTCAAATCCTCCATCCAAAGACCCGAAAATGCCTTTAGAGAAGGTCAAATCCACACATGCGACTCTCAAGATTTTCGAGGCGTCTTTAGACACTTTTGAGAAGTAG

mRNA sequence

ATGAGAGTGATAGCAATAGAAGAAATCGTCATTGGAAGAGACCTTCGAAGAAAGGAAAGGCATCAGTCACCTTTGGACGATCATTTTCAAGGACTTGTAGAGCTATGTAGTGATGGCTCTTTGATAGGGCCTCATGTTGTGGATTCGACCCTTGAAGAAGTTAGTACCTCAAAGACATTAGTTGCCAAACTAGCTGAACAATCCTTACATCCTCCTCTTCTTCTCGAAGAGATTCGTCGAGGCAAGATGAAGGTGAATGGAAAAGACATCGAAATTTCAAATCCTCCATCCAAAGACCCGAAAATGCCTTTAGAGAAGGTCAAATCCACACATGCGACTCTCAAGATTTTCGAGGCGTCTTTAGACACTTTTGAGAAGTAG

Coding sequence (CDS)

ATGAGAGTGATAGCAATAGAAGAAATCGTCATTGGAAGAGACCTTCGAAGAAAGGAAAGGCATCAGTCACCTTTGGACGATCATTTTCAAGGACTTGTAGAGCTATGTAGTGATGGCTCTTTGATAGGGCCTCATGTTGTGGATTCGACCCTTGAAGAAGTTAGTACCTCAAAGACATTAGTTGCCAAACTAGCTGAACAATCCTTACATCCTCCTCTTCTTCTCGAAGAGATTCGTCGAGGCAAGATGAAGGTGAATGGAAAAGACATCGAAATTTCAAATCCTCCATCCAAAGACCCGAAAATGCCTTTAGAGAAGGTCAAATCCACACATGCGACTCTCAAGATTTTCGAGGCGTCTTTAGACACTTTTGAGAAGTAG

Protein sequence

MRVIAIEEIVIGRDLRRKERHQSPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGKMKVNGKDIEISNPPSKDPKMPLEKVKSTHATLKIFEASLDTFEK

Homology

[Close]

BLAST of PI0012644.1 vs. ExPASy TrEMBL
Match: A0A5D3DEN0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001510 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 70/107 (65.42%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 23  SPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGK 82
           SPLDDH +GL+EL SD SL GPH VDS  EEV TSKT V KLAEQSLHP  LL+EIRRGK
Sbjct: 56  SPLDDHLEGLIELGSDESLTGPHAVDSAFEEVGTSKTPVNKLAEQSLHPFALLKEIRRGK 115

Query: 83  MKVNGKDIEISNPPSKD---PKMPLEKVKSTHATLKIFEASLDTFEK 127
           M V GKD+E  +P SK+   PK PL+KV STHA LK  E SL    K
Sbjct: 116 MTVGGKDLE--SPSSKEGACPKAPLQKVSSTHAPLKFSELSLGASNK 160

[Close]

BLAST of PI0012644.1 vs. ExPASy TrEMBL
Match: A0A5A7UI92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00690 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 16  RRKERHQSPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLL 75
           R K  +QSPL++H +GL+ L SD SLIGPH +DS +EEV TSKT V+K AEQ L P  LL
Sbjct: 27  RPKRSYQSPLNNHLEGLIALGSDESLIGPHTLDSAIEEVGTSKTPVSKSAEQYLRPSALL 86

Query: 76  EEIRRGKMKVNGKDIEISNPPSKDPKMPLEKVKSTHATLKIFEASLDTFEK 127
           EEIRRGKMKV GKDIE S       K PL+KV  THA LKIF   L+TF++
Sbjct: 87  EEIRRGKMKVEGKDIE-SIQGRCHLKAPLQKVSLTHAPLKIFVPPLNTFKR 136

[Close]

BLAST of PI0012644.1 vs. ExPASy TrEMBL
Match: A0A5A7TBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00270 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 23  SPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGK 82
           SPL+DH +G +EL SD SL+GPHVVDS +++V TSKT ++K A+QSL P  LL+EIRRGK
Sbjct: 56  SPLNDHLEGRIELDSDESLMGPHVVDSAIKKVGTSKTSISKPAKQSLRPSALLKEIRRGK 115

Query: 83  MKVNGKDIEISNPPSKD---PKMPLEKVKSTHATLKIFEASLDT 124
           M V GKD  I +PPSK    PK+PL+KV STHA LK  E+ LDT
Sbjct: 116 MTVEGKD--IGSPPSKGDVCPKVPLQKVNSTHAPLKFSESPLDT 157

[Close]

BLAST of PI0012644.1 vs. ExPASy TrEMBL
Match: A0A5D3BRC1 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00390 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.4e-23
Identity = 66/104 (63.46%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 23  SPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGK 82
           SPL+DH +GL+EL SD SL GPHVVDST+EEV T KT ++K AEQSL P  LLEEI +GK
Sbjct: 201 SPLNDHLEGLIELGSDESLTGPHVVDSTIEEVGTLKTPISKPAEQSLCPYALLEEICQGK 260

Query: 83  MKVNGKDIEISNPPSKD---PKMPLEKVKSTHATLKIFEASLDT 124
           M V GKDI   +PPSK    PK PL+KV STHA LK  E+ L+T
Sbjct: 261 MTVGGKDIR--SPPSKGDVCPKAPLQKVSSTHAPLKFSESPLNT 302

[Close]

BLAST of PI0012644.1 vs. ExPASy TrEMBL
Match: A0A5D3CXM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00530 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 22  QSPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRG 81
           +S L+ H +GL+EL +D SL+GPHVVDS +EEV TSKTLV+K A++SL P +LLEEI R 
Sbjct: 455 KSSLNTHLEGLIELDNDESLMGPHVVDSAIEEVGTSKTLVSKPAKKSLRPSILLEEIHRS 514

Query: 82  KMKVNGKDIEISNPPSKD--PKMPLEKVKSTHATLKIFEASLDTFEK 127
           KMKV GKDIE S+P   D  PK+PL+KV ST A LK  E+ LD   K
Sbjct: 515 KMKVGGKDIE-SSPSKGDVCPKVPLQKVSSTRAPLKYSESPLDASNK 560

[Close]

BLAST of PI0012644.1 vs. NCBI nr
Match: KAA0060401.1 (hypothetical protein E6C27_scaffold22G002130 [Cucumis melo var. makuwa] >TYK22141.1 hypothetical protein E5676_scaffold318G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-25
Identity = 70/107 (65.42%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 23  SPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGK 82
           SPLDDH +GL+EL SD SL GPH VDS  EEV TSKT V KLAEQSLHP  LL+EIRRGK
Sbjct: 56  SPLDDHLEGLIELGSDESLTGPHAVDSAFEEVGTSKTPVNKLAEQSLHPFALLKEIRRGK 115

Query: 83  MKVNGKDIEISNPPSKD---PKMPLEKVKSTHATLKIFEASLDTFEK 127
           M V GKD+E  +P SK+   PK PL+KV STHA LK  E SL    K
Sbjct: 116 MTVGGKDLE--SPSSKEGACPKAPLQKVSSTHAPLKFSELSLGASNK 160

[Close]

BLAST of PI0012644.1 vs. NCBI nr
Match: KAA0040874.1 (hypothetical protein E6C27_scaffold345G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 23  SPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGK 82
           SPL+DH +G +EL SD SL+GPHVVDS +++V TSKT ++K A+QSL P  LL+EIRRGK
Sbjct: 56  SPLNDHLEGRIELDSDESLMGPHVVDSAIKKVGTSKTSISKPAKQSLRPSALLKEIRRGK 115

Query: 83  MKVNGKDIEISNPPSKD---PKMPLEKVKSTHATLKIFEASLDT 124
           M V GKD  I +PPSK    PK+PL+KV STHA LK  E+ LDT
Sbjct: 116 MTVEGKD--IGSPPSKGDVCPKVPLQKVNSTHAPLKFSESPLDT 157

[Close]

BLAST of PI0012644.1 vs. NCBI nr
Match: KAA0053996.1 (hypothetical protein E6C27_scaffold318G00430 [Cucumis melo var. makuwa] >TYK20681.1 hypothetical protein E5676_scaffold480G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 16  RRKERHQSPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLL 75
           R K  +QSPL++H +GL+ L SD SLIGPH +DS +EEV TSKT V+K AEQ L P  LL
Sbjct: 27  RPKRSYQSPLNNHLEGLIALGSDESLIGPHTLDSAIEEVGTSKTPVSKSAEQYLRPSALL 86

Query: 76  EEIRRGKMKVNGKDIEISNPPSKDPKMPLEKVKSTHATLKIFEASLDTFEK 127
           EEIRRGKMKV GKDIE S       K PL+KV  THA LKIF   L+TF++
Sbjct: 87  EEIRRGKMKVEGKDIE-SIQGRCHLKAPLQKVSLTHAPLKIFVPPLNTFKR 136

[Close]

BLAST of PI0012644.1 vs. NCBI nr
Match: KAA0039587.1 (hypothetical protein E6C27_scaffold744G00610 [Cucumis melo var. makuwa] >TYK01714.1 hypothetical protein E5676_scaffold775G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 66/104 (63.46%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 23  SPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRGK 82
           SPL+DH +GL+EL SD SL GPHVVDST+EEV T KT ++K AEQSL P  LLEEI +GK
Sbjct: 201 SPLNDHLEGLIELGSDESLTGPHVVDSTIEEVGTLKTPISKPAEQSLCPYALLEEICQGK 260

Query: 83  MKVNGKDIEISNPPSKD---PKMPLEKVKSTHATLKIFEASLDT 124
           M V GKDI   +PPSK    PK PL+KV STHA LK  E+ L+T
Sbjct: 261 MTVGGKDIR--SPPSKGDVCPKAPLQKVSSTHAPLKFSESPLNT 302

[Close]

BLAST of PI0012644.1 vs. NCBI nr
Match: TYK16282.1 (hypothetical protein E5676_scaffold21G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 4.2e-22
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 22  QSPLDDHFQGLVELCSDGSLIGPHVVDSTLEEVSTSKTLVAKLAEQSLHPPLLLEEIRRG 81
           +S L+ H +GL+EL +D SL+GPHVVDS +EEV TSKTLV+K A++SL P +LLEEI R 
Sbjct: 455 KSSLNTHLEGLIELDNDESLMGPHVVDSAIEEVGTSKTLVSKPAKKSLRPSILLEEIHRS 514

Query: 82  KMKVNGKDIEISNPPSKD--PKMPLEKVKSTHATLKIFEASLDTFEK 127
           KMKV GKDIE S+P   D  PK+PL+KV ST A LK  E+ LD   K
Sbjct: 515 KMKVGGKDIE-SSPSKGDVCPKVPLQKVSSTRAPLKYSESPLDASNK 560

The following BLAST results are available for this feature:

BLAST of PI0012644.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012644.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEN0	3.4e-25	65.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UI92	1.1e-23	60.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TBN8	1.1e-23	61.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BRC1	5.4e-23	63.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3CXM9	2.0e-22	59.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0012644.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060401.1	7.0e-25	65.42	hypothetical protein E6C27_scaffold22G002130 [Cucumis melo var. makuwa] >TYK2214...	[more]
KAA0040874.1	2.2e-23	61.54	hypothetical protein E6C27_scaffold345G00270 [Cucumis melo var. makuwa]	[more]
KAA0053996.1	2.2e-23	60.36	hypothetical protein E6C27_scaffold318G00430 [Cucumis melo var. makuwa] >TYK2068...	[more]
KAA0039587.1	1.1e-22	63.46	hypothetical protein E6C27_scaffold744G00610 [Cucumis melo var. makuwa] >TYK0171...	[more]
TYK16282.1	4.2e-22	59.81	hypothetical protein E5676_scaffold21G00530 [Cucumis melo var. makuwa]	[more]

BLAST of PI0012644.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..106

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0012644	PI0012644	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012644.1-exon	PI0012644.1-exon-chr06:18117105..18117170	exon
PI0012644.1-exon	PI0012644.1-exon-chr06:18117295..18117609	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012644.1-cds	PI0012644.1-cds-chr06:18117105..18117170	CDS
PI0012644.1-cds	PI0012644.1-cds-chr06:18117295..18117609	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0012644.1	PI0012644.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane