PI0011863.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0011863.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag protease polyprotein
Location	chr04: 17649129 .. 17649340 (+)
Sequence length	180
RNA-Seq Expression	PI0011863.1
Synteny	PI0011863.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGAAACCTTATTGCAGTACTTGTGGAAAGTACCATTCAGGTCGTCGTTTTTCTAGGACAAAGGCTTGCTTCAAGTGCAAGCAAGAGGGGCACACAGCTGACAGATGCCCTAGTGGATCTACTAGAACTGGCCAGAATCAAAAGCTCAAGTACATCCTAGCAGGGTAGGGTCTTTGCCACTAATCGACGAGAGGTCGAGACAGTAG

mRNA sequence

ATGAGAGAGAAACCTTATTGCAGTACTTGTGGAAAGTACCATTCAGGTCGTCGTTTTTCTAGGACAAAGGCTTGCTTCAAGTGCAAGCAAGAGGGGCACACAGCTGACAGATGCCCTACTCAAGTACATCCTAGCAGGGTAGGGTCTTTGCCACTAATCGACGAGAGGTCGAGACAGTAG

Coding sequence (CDS)

ATGAGAGAGAAACCTTATTGCAGTACTTGTGGAAAGTACCATTCAGGTCGTCGTTTTTCTAGGACAAAGGCTTGCTTCAAGTGCAAGCAAGAGGGGCACACAGCTGACAGATGCCCTACTCAAGTACATCCTAGCAGGGTAGGGTCTTTGCCACTAATCGACGAGAGGTCGAGACAGTAG

Protein sequence

MREKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQVHPSRVGSLPLIDERSRQ

Homology

[Close]

BLAST of PI0011863.1 vs. ExPASy TrEMBL
Match: A0A5A7TBM2 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00600 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MREKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRC-------PTQVHPSRVG----- 60
          MRE+P+C+TCGKYH       T+A FKCKQEGHT DRC         QV P+ +G     
Sbjct: 21 MRERPFCNTCGKYHLRCCLFGTRADFKCKQEGHTTDRCLSGFMVIRAQVLPNVMGTDRNE 80

[Close]

BLAST of PI0011863.1 vs. ExPASy TrEMBL
Match: A0A5D3B6B4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 1   MREKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           +REKP C+TCG++H GR    T+ CFKCKQEGHTADRCP ++
Sbjct: 190 VREKPLCTTCGRHHLGRCLFGTRTCFKCKQEGHTADRCPMRL 231

[Close]

BLAST of PI0011863.1 vs. ExPASy TrEMBL
Match: A0A5A7VJX7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00070 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2   REKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           R KP C+TCGK+H GR   RT+ CFKC+QEGHTADRCP ++
Sbjct: 534 RGKPLCTTCGKHHLGRCLFRTRTCFKCRQEGHTADRCPLRL 574

[Close]

BLAST of PI0011863.1 vs. ExPASy TrEMBL
Match: A0A5A7SWR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001300 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2   REKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           REKP C+TCGK+H GR    T+ CFKC+QEGHTADRCP ++
Sbjct: 325 REKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRL 365

[Close]

BLAST of PI0011863.1 vs. ExPASy TrEMBL
Match: A0A5A7SNK4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00200 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2   REKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           R KP C+TCGK+H GR   RT+ CFKC+QEGHTADRCP ++
Sbjct: 160 RGKPLCTTCGKHHLGRCLFRTRTCFKCRQEGHTADRCPLRL 200

[Close]

BLAST of PI0011863.1 vs. NCBI nr
Match: KAA0040473.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYK23486.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 7.3e-09
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MREKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRC-------PTQVHPSRVG----- 60
          MRE+P+C+TCGKYH       T+A FKCKQEGHT DRC         QV P+ +G     
Sbjct: 21 MRERPFCNTCGKYHLRCCLFGTRADFKCKQEGHTTDRCLSGFMVIRAQVLPNVMGTDRNE 80

[Close]

BLAST of PI0011863.1 vs. NCBI nr
Match: KAA0039646.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ95530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 1   MREKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           +REKP C+TCG++H GR    T+ CFKCKQEGHTADRCP ++
Sbjct: 190 VREKPLCTTCGRHHLGRCLFGTRTCFKCKQEGHTADRCPMRL 231

[Close]

BLAST of PI0011863.1 vs. NCBI nr
Match: KAA0035480.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2   REKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           REKP C+TCGK+H GR    T+ CFKC+QEGHTADRCP ++
Sbjct: 325 REKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRL 365

[Close]

BLAST of PI0011863.1 vs. NCBI nr
Match: KAA0032208.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2   REKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           R KP C+TCGK+H GR   RT+ CFKC+QEGHTADRCP ++
Sbjct: 160 RGKPLCTTCGKHHLGRCLFRTRTCFKCRQEGHTADRCPLRL 200

[Close]

BLAST of PI0011863.1 vs. NCBI nr
Match: KAA0038411.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2   REKPYCSTCGKYHSGRRFSRTKACFKCKQEGHTADRCPTQV 43
           REKP C+TCGK+H GR    T+ CFKC+QEGHTADRCP ++
Sbjct: 329 REKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRL 369

The following BLAST results are available for this feature:

BLAST of PI0011863.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011863.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBM2	3.5e-09	52.78	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3B6B4	1.8e-08	64.29	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7VJX7	3.0e-08	65.85	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7SWR6	3.0e-08	65.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]
A0A5A7SNK4	3.0e-08	65.85	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of PI0011863.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040473.1	7.3e-09	52.78	gag protease polyprotein [Cucumis melo var. makuwa] >TYK23486.1 gag protease pol...	[more]
KAA0039646.1	3.6e-08	64.29	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ95530.1 D...	[more]
KAA0035480.1	6.2e-08	65.85	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032208.1	6.2e-08	65.85	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038411.1	6.2e-08	65.85	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0011863.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 24..40 e-value: 0.0041 score: 25.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 24..39 e-value: 2.1E-5 score: 24.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 25..39 score: 9.454925
None	No IPR available	GENE3D	4.10.60.10		coord: 16..58 e-value: 2.5E-6 score: 29.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 14..42

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0011863	PI0011863	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011863.1-exon	PI0011863.1-exon-chr04:17649129..17649246	exon
PI0011863.1-exon	PI0011863.1-exon-chr04:17649279..17649340	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011863.1-cds	PI0011863.1-cds-chr04:17649129..17649246	CDS
PI0011863.1-cds	PI0011863.1-cds-chr04:17649279..17649340	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0011863.1	PI0011863.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity