PI0010553.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0010553.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	HIG1 domain-containing protein
Location	chr03: 24436692 .. 24437196 (+)
Sequence length	258
RNA-Seq Expression	PI0010553.1
Synteny	PI0010553.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACTACCATTGGTACTTATTAGTTATTACTACTCTTCTTCGTCATTTCCCAATCTTTTTCTTTACTCTCTTCTAAATCTTACTTTGTTTTTGGGTTATACATATAGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGTTTAACACCCCCACCTACTCTTCTCTTCTCTACATTTTAGATTTAGTTTCTATTATGTTACTATTATGTATTTAGTATTGTAACTATTTCCCATTCTTTTTGTTATTCAAATTCAAATTCAAAATGAAATATTAATTTGGTTTGTAATTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCGGCAGTCTACCACTACTACGACAACAAATTCGCCAGGGACCGATCCGAAGCTCCGGTTTCTCGGGGAGGGAAATGA

mRNA sequence

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACTACCATTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCGGCAGTCTACCACTACTACGACAACAAATTCGCCAGGGACCGATCCGAAGCTCCGGTTTCTCGGGGAGGGAAATGA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACTACCATTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCGGCAGTCTACCACTACTACGACAACAAATTCGCCAGGGACCGATCCGAAGCTCCGGTTTCTCGGGGAGGGAAATGA

Protein sequence

MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKFARDRSEAPVSRGGK

Homology

[Close]

BLAST of PI0010553.1 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEA-PVSRGGK 86
          AAVYHYYDNKF  DRSEA PVSRGGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of PI0010553.1 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.3e-36
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEA-PVSRGGK 86
          AAVYHYYDNK  RDRSEA PVS GGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of PI0010553.1 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVSEHKLT+IG LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYDNK 71
           AAVYHYY+ +
Sbjct: 98  AAVYHYYEKR 107

[Close]

BLAST of PI0010553.1 vs. ExPASy TrEMBL
Match: A0A5N5F021 (HIG1 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_031816 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSEHKLT+IG +WAS +GASLAY+R+RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSRARTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDN 70
          AA+YHYY++
Sbjct: 61 AAIYHYYED 69

[Close]

BLAST of PI0010553.1 vs. ExPASy TrEMBL
Match: A0A540LHQ1 (HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.3e-25
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSEHKLT+IG +WAS +GASLAY+++RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSKTRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDR 76
          AAVYHYY+   A  R
Sbjct: 61 AAVYHYYEEHEAAAR 75

[Close]

BLAST of PI0010553.1 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEA-PVSRGGK 86
          AAVYHYYDNKF  DRSEA PVSRGGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of PI0010553.1 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEA-PVSRGGK 86
          AAVYHYYDNK  RDRSEA PVS GGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of PI0010553.1 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 76/85 (89.41%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSEHKLTTIGALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEAPVSRGGK 86
          AAVYHYY++K A  RSEAP S GGK
Sbjct: 61 AAVYHYYEDKLAGGRSEAPASPGGK 85

[Close]

BLAST of PI0010553.1 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEAPVS 82
          AAVYHYY+NK A  RSEAP S
Sbjct: 61 AAVYHYYENKSAGVRSEAPTS 81

[Close]

BLAST of PI0010553.1 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFARDRSEAPVS 82
          AAVYHYY+NK A  RSEAP S
Sbjct: 61 AAVYHYYENKSAGVRSEAPTS 81

[Close]

BLAST of PI0010553.1 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-19
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 2  EAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of PI0010553.1 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-18
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4  IQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNK 71
            YYD+K
Sbjct: 71 VEYYDHK 77

The following BLAST results are available for this feature:

BLAST of PI0010553.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010553.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEZ1	2.2e-36	95.35	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0K7T4	8.3e-36	95.35	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A7J7I509	3.5e-26	85.71	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5N5F021	1.7e-25	84.06	HIG1 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 ...	[more]
A0A540LHQ1	2.3e-25	80.00	HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 S...	[more]

BLAST of PI0010553.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052029.1	4.5e-36	95.35	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
XP_004138401.1	1.7e-35	95.35	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
XP_038886475.1	1.4e-32	89.41	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
KAG6578469.1	3.4e-31	90.12	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	3.4e-31	90.12	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of PI0010553.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	9.1e-19	60.87	Hypoxia-responsive family protein	[more]
AT5G27760.1	4.5e-18	59.70	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..73 e-value: 1.2E-6 score: 30.1
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..74
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 4.3E-9 score: 36.4
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 20.175138
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0010553	PI0010553	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010553.1-exon	PI0010553.1-exon-chr03:24436692..24436740	exon
PI0010553.1-exon	PI0010553.1-exon-chr03:24436836..24436926	exon
PI0010553.1-exon	PI0010553.1-exon-chr03:24437079..24437196	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010553.1-cds	PI0010553.1-cds-chr03:24436692..24436740	CDS
PI0010553.1-cds	PI0010553.1-cds-chr03:24436836..24436926	CDS
PI0010553.1-cds	PI0010553.1-cds-chr03:24437079..24437196	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0010553.1	PI0010553.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome