PI0010212.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0010212.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr10: 2874268 .. 2875501 (-)
Sequence length690
RNA-Seq ExpressionPI0010212.1
SyntenyPI0010212.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAACGAAACAGATGGATAAGGCCCACATAGACCGATTGGTAGAGATCGAAGAGCAGATGTTCTACCTGGTGGAAATTCCAGTCACCGTGCACTTCTTGAAAGGTTAAATTGAAGAAATTTTTGAGAAAGTTGATGCTACTGATGCAGTGACCGGTCGCCTCGACAAATTACTTATAAACGAGTTGTTGACAAGAGTCGACACTCTAGAGGCAAGGGCTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGGTTAGCGAGCTAGATAGCTCCCAAAAGTTGATCGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCGTCAGGAATGAGATTGCAGACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCTATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCGCAAAAGCCTTAGAGAACTTTATATTTGACCTCGAACAATACTTTCGGGCCACAAACACTGTTGCGGAGGAAGCGAAAGTGACACTAGCAACGATGCACCTAGCCGAGGATGCAAAATTGTGGTGGCGGTCCCAGTATGTCGAGATCCAAGAAGGATGATGTACGATAGACACCTGAGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCTCGAGAATGTTAAAATCCTTGCTCGATGGAAGTTACGTGAATTAAAACACACACGGTAGCATTCGGGATTATGTGAAGCAGTTTACGGGATTGATGTTAGACATACGCGATATGTCCGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGCCTTAAACCATGGGCAAAAACCAAGCTATACGAACAGAAGGTCCAAGAACTCTCGTCGGCATACATAGTGGCAGAGCGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCATTCAAGTTCCTCATTTGGAGGAAATAAGAACAATCATGCAAGTTTTCCAAAGGCCGAAGGAGGAGATAAACGATCTAGTGGTGATCGTAGGCCCTTTCAACCAAACATCGGGAACACGGGGCGAGGATAGAACCACCAAAACTCTCACAATCGTCCCCCTTCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTCCGAATCGAACCACCTTTAACGCCTTTCAGGCTGCCTTAG

mRNA sequence

ATGTCTACAACGAAACAGATGGATAAGGCCCACATAGACCGATTGGTAGAGATCGAAGAGCAGATGTTCTACCTGGTGGAAATTCCAGTCACCGTGCACTTCTTGAAAGAAATTTTTGAGAAAGTTGATGCTACTGATGCAGTGACCGGTCGCCTCGACAAATTACTTATAAACGAGTTGTTGACAAGAGTCGACACTCTAGAGGCAAGGGCTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGGTTAGCGAGCTAGATAGCTCCCAAAAGTTGATCGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCGTCAGGAATGAGATTGCAGACGTGAGCGCGAGGTGGCAGAGCGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCATTCAAGTTCCTCATTTGGAGGAAATAAGAACAATCATGCAAGTTTTCCAAAGGCCGAAGGAGGAGATAAACGATCTAGTGGTGATCGTAGGCCCTTTCAACCAAACATCGGGAACACGGGGCGAGGATAGAACCACCAAAACTCTCACAATCGTCCCCCTTCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTCCGAATCGAACCACCTTTAACGCCTTTCAGGCTGCCTTAG

Coding sequence (CDS)

ATGTCTACAACGAAACAGATGGATAAGGCCCACATAGACCGATTGGTAGAGATCGAAGAGCAGATGTTCTACCTGGTGGAAATTCCAGTCACCGTGCACTTCTTGAAAGAAATTTTTGAGAAAGTTGATGCTACTGATGCAGTGACCGGTCGCCTCGACAAATTACTTATAAACGAGTTGTTGACAAGAGTCGACACTCTAGAGGCAAGGGCTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGGTTAGCGAGCTAGATAGCTCCCAAAAGTTGATCGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCGTCAGGAATGAGATTGCAGACGTGAGCGCGAGGTGGCAGAGCGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCATTCAAGTTCCTCATTTGGAGGAAATAAGAACAATCATGCAAGTTTTCCAAAGGCCGAAGGAGGAGATAAACGATCTAGTGGTGATCGTAGGCCCTTTCAACCAAACATCGGGAACACGGGGCGAGGATAGAACCACCAAAACTCTCACAATCGTCCCCCTTCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTCCGAATCGAACCACCTTTAACGCCTTTCAGGCTGCCTTAG

Protein sequence

MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHFLKEIFEKVDATDAVTGRLDKLLINELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFRAALDVVRNEIADVSARWQSDYLTCPVTLKMRDVIQVPHLEEIRTIMQVFQRPKEEINDLVVIVGPFNQTSGTRGEDRTTKTLTIVPLPVSYVRGRTWRENVRIEPPLTPFRLP
Homology
BLAST of PI0010212.1 vs. ExPASy TrEMBL
Match: A0A5D3DUL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00940 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.2e-40
Identity = 101/166 (60.84%), Postives = 116/166 (69.88%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHFLK----EIFEKVDATDAVTGRLDKLL 60
           MSTTKQ+ K   DRLVE++EQM YLVE+  ++HFLK    EI+EK DA DAVT RLD L 
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELLTRVDTLE +  RTGNYE GDSST  V+HIEERV ELDSSQK I+EMIN MS+DFR
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVELDSSQKSIMEMINSMSKDFR 120

Query: 121 AALDVVRNEIADVSARWQSDY-----LTCPVTLKMRDVIQVPHLEE 158
           A LDVVRNEIAD    +  D       T  VT + +  +   HL E
Sbjct: 121 ATLDVVRNEIADALENFIFDLEQYFKATSTVTEEAKVTLATMHLSE 166

BLAST of PI0010212.1 vs. ExPASy TrEMBL
Match: A0A5A7UCI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1510G00050 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 8.8e-40
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+   + KA  DRLVE+EEQM YLVE+P+++ F    L+EI EK+D  DAV GR+  LL
Sbjct: 1   MSSANPLGKAQRDRLVELEEQMLYLVEVPISIRFLESRLEEIAEKIDMIDAVAGRVKGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSE+FR
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSENFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

BLAST of PI0010212.1 vs. ExPASy TrEMBL
Match: A0A5A7TEV3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001730 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.3e-37
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRLVE+EEQM YLVE+P ++HF    L+EI EK D  DA+ GR++ L 
Sbjct: 1   MSSVNPSGKAQRDRLVELEEQMLYLVEVPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I +LL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDF 
Sbjct: 61  IQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKKLLEMINYMSEDFL 120

Query: 121 AALDVVRNEIADVSARWQ-----------------SDYLTCPVTLKMRDVIQVPHLEEIR 176
           A LDVVRNEIADV+AR                    D LTC    +   + ++ H+  IR
Sbjct: 121 ATLDVVRNEIADVNARLSLTMRAMANLGRSTICGGPDLLTC----RRDKLCELKHIGSIR 180

BLAST of PI0010212.1 vs. ExPASy TrEMBL
Match: A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS++    KA  DRLVE+EEQM YLVE+P ++ +    L+EIF+K +  DAVTGR++   
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFP 60

Query: 61  INELLTRVDTLE--ARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSAR 133
           FRA LDVVRNEIADV+AR
Sbjct: 121 FRATLDVVRNEIADVNAR 138

BLAST of PI0010212.1 vs. ExPASy TrEMBL
Match: A0A5A7TP22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00510 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRL E+EEQM YL+E+P ++ F    L++I EK D  DAV GR++ LL
Sbjct: 1   MSSANPSGKAQRDRLKELEEQMLYLIEVPDSIRFLESRLEKIAEKTDMIDAVAGRVEGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDFR
Sbjct: 61  IQELLARVDTLEETVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINVMSEDFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

BLAST of PI0010212.1 vs. NCBI nr
Match: KAA0062476.1 (uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK27406.1 uncharacterized protein E5676_scaffold325G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-39
Identity = 101/166 (60.84%), Postives = 116/166 (69.88%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHFLK----EIFEKVDATDAVTGRLDKLL 60
           MSTTKQ+ K   DRLVE++EQM YLVE+  ++HFLK    EI+EK DA DAVT RLD L 
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELLTRVDTLE +  RTGNYE GDSST  V+HIEERV ELDSSQK I+EMIN MS+DFR
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVELDSSQKSIMEMINSMSKDFR 120

Query: 121 AALDVVRNEIADVSARWQSDY-----LTCPVTLKMRDVIQVPHLEE 158
           A LDVVRNEIAD    +  D       T  VT + +  +   HL E
Sbjct: 121 ATLDVVRNEIADALENFIFDLEQYFKATSTVTEEAKVTLATMHLSE 166

BLAST of PI0010212.1 vs. NCBI nr
Match: KAA0051251.1 (uncharacterized protein E6C27_scaffold2143G00070 [Cucumis melo var. makuwa] >TYK28094.1 uncharacterized protein E5676_scaffold1510G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-39
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+   + KA  DRLVE+EEQM YLVE+P+++ F    L+EI EK+D  DAV GR+  LL
Sbjct: 1   MSSANPLGKAQRDRLVELEEQMLYLVEVPISIRFLESRLEEIAEKIDMIDAVAGRVKGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSE+FR
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSENFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

BLAST of PI0010212.1 vs. NCBI nr
Match: KAA0041962.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-36
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRLVE+EEQM YLVE+P ++HF    L+EI EK D  DA+ GR++ L 
Sbjct: 1   MSSVNPSGKAQRDRLVELEEQMLYLVEVPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I +LL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDF 
Sbjct: 61  IQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKKLLEMINYMSEDFL 120

Query: 121 AALDVVRNEIADVSARWQ-----------------SDYLTCPVTLKMRDVIQVPHLEEIR 176
           A LDVVRNEIADV+AR                    D LTC    +   + ++ H+  IR
Sbjct: 121 ATLDVVRNEIADVNARLSLTMRAMANLGRSTICGGPDLLTC----RRDKLCELKHIGSIR 180

BLAST of PI0010212.1 vs. NCBI nr
Match: KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-36
Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS++    KA  DRLVE+EEQM YLVE+P ++ +    L+EIF+K +  DAVTGR++   
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFP 60

Query: 61  INELLTRVDTLE--ARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSAR 133
           FRA LDVVRNEIADV+AR
Sbjct: 121 FRATLDVVRNEIADVNAR 138

BLAST of PI0010212.1 vs. NCBI nr
Match: KAA0045293.1 (uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-36
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 0

Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRL E+EEQM YL+E+P ++ F    L++I EK D  DAV GR++ LL
Sbjct: 1   MSSANPSGKAQRDRLKELEEQMLYLIEVPDSIRFLESRLEKIAEKTDMIDAVAGRVEGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDFR
Sbjct: 61  IQELLARVDTLEETVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINVMSEDFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DUL15.2e-4060.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UCI78.8e-4068.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TEV35.3e-3751.02Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7SKW37.0e-3765.94Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TP227.0e-3766.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0062476.11.1e-3960.84uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0051251.11.8e-3968.38uncharacterized protein E6C27_scaffold2143G00070 [Cucumis melo var. makuwa] >TYK... [more]
KAA0041962.11.1e-3651.02reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcripta... [more]
KAA0031722.11.4e-3665.94uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa][more]
KAA0045293.11.4e-3666.18uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0010212PI0010212gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0010212.1-exonPI0010212.1-exon-chr10:2874268..2874561exon
PI0010212.1-exonPI0010212.1-exon-chr10:2875094..2875380exon
PI0010212.1-exonPI0010212.1-exon-chr10:2875393..2875501exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0010212.1-cdsPI0010212.1-cds-chr10:2874268..2874561CDS
PI0010212.1-cdsPI0010212.1-cds-chr10:2875094..2875380CDS
PI0010212.1-cdsPI0010212.1-cds-chr10:2875393..2875501CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0010212.1PI0010212.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding