|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGGTTCTCATGGGAGTTTAGTATGAGTGTAGGAGAGAAATTAGGGTTTGAGATTTATGATGAATTGTGGAGGAAGGAAGAGAGACAGTCTAAGGGGTTTGGGGAAGCTGGAAATTTGGAGAAGAGATGCTTGATGACGCTGTTCATCGTACAGGCGAGACGGAGATGGATTGGGCTTTGGGCTTCGGCCATTGGGGCATGGGGCATTGGGCCCAGATATGTTGGTTGTAG mRNA sequence ATGGGGTTCTCATGGGAGTTTAGTATGAGGGTTTGGGGAAGCTGGAAATTTGGAGAAGAGATGCTTGATGACGCTGTTCATCGTACAGGCGAGACGGAGATGGATTGGGCTTTGGGCTTCGGCCATTGGGGCATGGGGCATTGGGCCCAGATATGTTGGTTGTAG Coding sequence (CDS) ATGGGGTTCTCATGGGAGTTTAGTATGAGGGTTTGGGGAAGCTGGAAATTTGGAGAAGAGATGCTTGATGACGCTGTTCATCGTACAGGCGAGACGGAGATGGATTGGGCTTTGGGCTTCGGCCATTGGGGCATGGGGCATTGGGCCCAGATATGTTGGTTGTAG Protein sequence MGFSWEFSMRVWGSWKFGEEMLDDAVHRTGETEMDWALGFGHWGMGHWAQICWL
Homology
BLAST of PI0010146.1 vs. ExPASy TrEMBL
Match: A0A0A0KRE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550180 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 9.4e-17 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 1 MGFSWEFSMR------------VWGSWKFGEEMLDDAVHRTGETEMDWALGFGHWGMG 47 MGFSWEFSMR VWGSWKFGEEMLDDAVHRTGETEMDWA GFGHW +G Sbjct: 1 MGFSWEFSMRGGREGGRKTVIGVWGSWKFGEEMLDDAVHRTGETEMDWAFGFGHWALG 58
BLAST of PI0010146.1 vs. NCBI nr
Match: KGN51454.1 (hypothetical protein Csa_008202 [Cucumis sativus]) HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 1 MGFSWEFSMR------------VWGSWKFGEEMLDDAVHRTGETEMDWALGFGHWGMG 47 MGFSWEFSMR VWGSWKFGEEMLDDAVHRTGETEMDWA GFGHW +G Sbjct: 1 MGFSWEFSMRGGREGGRKTVIGVWGSWKFGEEMLDDAVHRTGETEMDWAFGFGHWALG 58
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KRE8 | 9.4e-17 | 74.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550180 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN51454.1 | 1.9e-16 | 74.14 | hypothetical protein Csa_008202 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
PI0010146 | PI0010146 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
PI0010146.1-exon | PI0010146.1-exon-chr09:5642989..5643016 | exon |
PI0010146.1-exon | PI0010146.1-exon-chr09:5643085..5643221 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
PI0010146.1-cds | PI0010146.1-cds-chr09:5642989..5643016 | CDS |
PI0010146.1-cds | PI0010146.1-cds-chr09:5643085..5643221 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
PI0010146.1 | PI0010146.1-protein | polypeptide |
|