PI0009615.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0009615.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 985565 .. 986002 (+)
Sequence length	438
RNA-Seq Expression	PI0009615.1
Synteny	PI0009615.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAATTGGGTTAAAAAGGCATACGACAGAGTAAGGCGGACCTTGGAAGTGGTGGCGGAAGCGGTTATGATTGTGGGGACTTGGGTTAGACAGGCATACGGCGGAGTAAGGCGGACCATGGAAGTTGTGGCGAAGATGGTGGAGGAATTGACGGAGATGATTGTAGCATTGTGTGTATCATCAGCCATAGGAATACCAGCAACTTCAGTTCAAATCAAAACTGAGCTTCCAAATTCATTTAGGATTCTTTCCATCCTTGTTTTGCTATGTTTTGTGTCCTTTTGTTTTGCAAGAATGACCAAACCCATTTTCAAAACACTTTCAAAGATTTTGTATTGTATTGGAGGTTTTTCATGTGCCACATCCTGTTTCATAGCCACGGCCATTCCTATCATCAAACATATTTTCATACCATTCTTATTGTCCTTTACTTAA

mRNA sequence

ATGGGGAATTGGGTTAAAAAGGCATACGACAGAGTAAGGCGGACCTTGGAAGTGGTGGCGGAAGCGGTTATGATTGTGGGGACTTGGGTTAGACAGGCATACGGCGGAGTAAGGCGGACCATGGAAGTTGTGGCGAAGATGGTGGAGGAATTGACGGAGATGATTGTAGCATTGTGTGTATCATCAGCCATAGGAATACCAGCAACTTCAGTTCAAATCAAAACTGAGCTTCCAAATTCATTTAGGATTCTTTCCATCCTTGTTTTGCTATGTTTTGTGTCCTTTTGTTTTGCAAGAATGACCAAACCCATTTTCAAAACACTTTCAAAGATTTTGTATTGTATTGGAGGTTTTTCATGTGCCACATCCTGTTTCATAGCCACGGCCATTCCTATCATCAAACATATTTTCATACCATTCTTATTGTCCTTTACTTAA

Coding sequence (CDS)

ATGGGGAATTGGGTTAAAAAGGCATACGACAGAGTAAGGCGGACCTTGGAAGTGGTGGCGGAAGCGGTTATGATTGTGGGGACTTGGGTTAGACAGGCATACGGCGGAGTAAGGCGGACCATGGAAGTTGTGGCGAAGATGGTGGAGGAATTGACGGAGATGATTGTAGCATTGTGTGTATCATCAGCCATAGGAATACCAGCAACTTCAGTTCAAATCAAAACTGAGCTTCCAAATTCATTTAGGATTCTTTCCATCCTTGTTTTGCTATGTTTTGTGTCCTTTTGTTTTGCAAGAATGACCAAACCCATTTTCAAAACACTTTCAAAGATTTTGTATTGTATTGGAGGTTTTTCATGTGCCACATCCTGTTTCATAGCCACGGCCATTCCTATCATCAAACATATTTTCATACCATTCTTATTGTCCTTTACTTAA

Protein sequence

MGNWVKKAYDRVRRTLEVVAEAVMIVGTWVRQAYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSFRILSILVLLCFVSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIPIIKHIFIPFLLSFT

Homology

[Close]

BLAST of PI0009615.1 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.3e-32
Identity = 77/128 (60.16%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 18  VVAEAVMIVGTWVRQAYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTEL 77
           ++ +  + V  W RQ YGGVRR++EVVA+MVEE  EMI+  C+SSAIGI   SVQ KT+L
Sbjct: 1   MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL 60

Query: 78  PNSFRILSILVLLCFVSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIPIIKHIF 137
           PNSF+ LSI VL+CF+S  FARM   IFKTLSKILYC GGF CAT CFIATAIP   H  
Sbjct: 61  PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH 120

Query: 138 IPFLLSFT 146
           I  ++ ++
Sbjct: 121 IIVIVLYS 128

[Close]

BLAST of PI0009615.1 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.7e-31
Identity = 75/110 (68.18%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 22  AVMIVGTWVRQAYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSF 81
           A+++   W RQAYGGVRR+ EV A+MVEE  +MI+  CVSSAIGI   SV IKTELPNSF
Sbjct: 4   ALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSF 63

Query: 82  RILSILVLLCFVSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIP 132
           ++LSI VLLCFVS  FARM   IF+TLSKILYC+GG   A+SCFIATAIP
Sbjct: 64  QLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 113

[Close]

BLAST of PI0009615.1 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 23  VMIVGTWVRQAYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSFR 82
           ++ VG W RQ Y G RR++E+VA+ VEE  E I+ LCVSSAIGI  TSVQIKT+LPNSF+
Sbjct: 8   IVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQ 67

Query: 83  ILSILVLLCFVSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAI 131
            LS+ +LLCFVS  FARM + +F+TLS+ILYC+G F CAT+CFIATAI
Sbjct: 68  CLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAI 115

[Close]

BLAST of PI0009615.1 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 34  YGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKT--ELPNSFRILSILVLLC 93
           +GG + TM  VA+MVEE  EMIVALCVSSAIGI   SVQI+T  +LP +F+ LSI+VLLC
Sbjct: 32  HGGRKLTM--VAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 94  FVSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIPIIKH----IFIPFLL 143
           F    FA+MTKPIFKT+SKILYC+GGF   T+ FIATAIP   +    IFI +LL
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLL 144

[Close]

BLAST of PI0009615.1 vs. ExPASy TrEMBL
Match: A0A0A0LEV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-09
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 41  MEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSFRILSILVLLCFVSFCFARM 100
           +EVVAKMVEE    I+    +    I A SVQ K +LP+SF  +SI  LLC + F  A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 101 TKPIFKTLSKILYCIGGFSCATSCFIATAIPIIKHIFIPFLLSF 145
               FKT +K+LY +G F C TS  IA AIP   +  +  +L F
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLF 113

[Close]

BLAST of PI0009615.1 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-28
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 33  AYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSFRILSILVLLCF 92
           AYGGVRR+ EV A+MVEE  +MI+  CVSSAIGI   SV IKTELPNSF++LSI VLLCF
Sbjct: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60

Query: 93  VSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIP 132
           VS  FARM   IF+TLSKILYC+GG   A+SCFIATAIP
Sbjct: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 99

[Close]

BLAST of PI0009615.1 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 18  VVAEAVMIVGTWVRQAYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTEL 77
           ++ +  + V  W RQ YGGVRR++EVVA+MVEE  EMI+  C+SSAIGI   SVQ KT+L
Sbjct: 1   MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL 60

Query: 78  PNSFRILSILVLLCFVSFCFARMTKPIFKTLSKIL 113
           PNSF+ LSI VL+CF+S  FARM   IFKTLSKIL
Sbjct: 61  PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKIL 95

[Close]

BLAST of PI0009615.1 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 35  GGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSFRILSILVLLCFVS 94
           GG        A+MVEE  +MIVA CVSSAI I   SVQI+ +LP  F  LS+ +LLCF  
Sbjct: 27  GGPSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGF 86

Query: 95  FCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIPIIKHIFIPFLLSF 145
             F +MTK I K +S+ILYC+GG    T+ FIA+AIP   +  I   L +
Sbjct: 87  VAFGKMTKSILKRVSRILYCVGGVLGVTALFIASAIPYASYFQIIIFLIY 136

[Close]

BLAST of PI0009615.1 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 30  VRQAYGGVRRTMEVVAKMVEELTEMIVALCVSSAIGIPATSVQIKTELPNSFRILSILVL 89
           + QA    R  + VV    +E TE+ V  C++SAI I   SVQ+ ++L  +F +LS+ +L
Sbjct: 39  IDQAEAPARAAVGVVEVQHKEWTELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTIL 98

Query: 90  LCFVSFCFARMTKPIFKTLSKILYCIGGFSCATSCFIATAIP 132
           L F SF  ++  K  F   +++L   G F   T+ F+A  IP
Sbjct: 99  LAFASFVVSKFIKFKFLVSAQVLENFGVFFTMTAFFMAITIP 140

The following BLAST results are available for this feature:

BLAST of PI0009615.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009615.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCY2	3.3e-32	60.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LSX4	4.7e-31	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LQP5	1.5e-29	64.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LQB6	2.4e-22	62.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LEV1	5.1e-09	43.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

BLAST of PI0009615.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652531.1	5.9e-28	71.72	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KGN60003.2	1.8e-21	62.11	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAG6572911.1	1.3e-14	48.18	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3947053.1	1.2e-04	35.29	hypothetical protein CMV_026760 [Castanea mollissima]	[more]

BLAST of PI0009615.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 27..132
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 27..132

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0009615	PI0009615	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0009615.1-exon	PI0009615.1-exon-chr12:985565..986002	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0009615.1-cds	PI0009615.1-cds-chr12:985565..986002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0009615.1	PI0009615.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding