PI0008973.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008973.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr03: 20258591 .. 20263702 (-)
Sequence length	642
RNA-Seq Expression	PI0008973.1
Synteny	PI0008973.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATGTCCTCTTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCTGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGGGCAAAGGGAAGGCTAAGGTAGCCGACAAGGGAAAGTGCTTCCACTGCAATATGGATGGACATTGGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGAAGGTAAATATGATTTACTTGTTTTAGAAACTTGTTTAGTGGAAAATGACCAAAATGCCTGGATACTTGATTCAGGAGCCACTAATCATGTTTGTTCTTCTTTACAGAAAACTAGTTCCTTCCAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGGTTGGAACGGGAGACGCCATTTCAGCTTGTGCAGTGGGAGATGTGAAGTTGTTTTTTAGAAATAGATATTTAATCTTAGACAATTTGTATATAGTTCCTAAGATTAAAAGGAATCTTGTATCTATTTCTTGTCTTCTTGAACAATGTTACTCTATAAATTTTTCTTTAAATGAAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAGAAAACAACTTGTATGTATTAAGACCTAACGAAGCGAAAGCAATTTTAAATCATGAGATGTTTAAAACTGCTAACACTCAAAATAAAAGGCAAAGAATTTCTCAAAATAACAATACTTATCTTTGGCATTTAAGATTAGGTCACATTAATCTCGATCGGATCGGGAGATTAGTAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACTAAAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCCCTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTGAAAGCTCGAGGAGGTTTCGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCGTAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTGTTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAACATGGAATTCAATCTCAACTCTCAGCACCAGGTACACCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACCCTGTTAGACATGGTTCGTTCAATGATGAGCTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGGATATGGGGTTGTCCAGCACACGTGCTAGTGACAAATCCCAAAAAGTTGGAACCTCGTTCAAGATTATGCCAATTTATTGGTTACCCTAAAGAAACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAACAGAGTATTTGTATCGACAAACGCTACTTTCTTGGAAGAAGATCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGAGTTGTTGATGAAGCTGGTCCCCATCAAGAGTTGATGAAACCAACGCATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGATTGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGACAAAGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTATGGGAGCTTGTAGATCTACCTGAAGGGGTGAAACCCATAGGGTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTACACCCAAAGGGAAGGGGTTGACTATGAGGAAACCTTTTCCCATGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAAGGGTTCATAACCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTAAATCGATCCATTTATGGGTTGAAACAAGCATCCAGATCTTGGAACATTAGGTTTGATACCGCGATCAAATCTTATGGTTTTGACCAAAATGTTGATGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTTCTCATTGGGAATGATATAGGATACCTAACTGACGTAAAAACTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTGGGAGAGGCACAGTATGTTCTTGGGATCCAAATCATAAGGGATCGTAAGAACAAAACGCTAGCTCTGTCTCAAGCAACCTATATCGACAAAATGTTGATTCGATATTCGATGCAGAACTCCAAGAAGGGTTTATTACCTTTCAGACATGGGGTTCACTTGTCGAAGGAACAGTGTCCTAAGACACCTCAAGATGTTGAGGATATGAGACGTATTCCTTATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTACCAATCCAACCCAGGGTTAGACCACTGGACAACGGTTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGACTTCCAAACTGACAAGGATTCTAGGAAATCCACGTCGGGATCAGTGTTCACCCTGAACGGGGGAGCTGTTGTATGGCGTAGCATCAAGCAAGGATGCATTGCGGACTCCACCATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAAAAGCAGTTTGGCTCAGGAAGTTCCTGCATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTCTTTATTGTGACAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCACAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTTACCAAGATCGCTTCAGAGCACAACATTGCTGATCCGTTTACGAAGACTCTCACGACTAAAGTGTTCGAGGGTCATCTAGAAAGTCTAGGTCTGCGAGATATGTACATTAGGTGATCTAGGGCAAGTGGGAGATGTGTAATGGGTATGAGGATGCCCTAGTTTATTGTATTTGTATATATACGTTTTATGTAATATACTTGTACATTTTACCATTTCCAATGTTTGAGGATTGCTTTATTATGTACATCCCATAGACTACCACTAGGCTAGAGTTTTAGTCCAAGTGGGAGTTTGTTGGGTTTTATGTCCTAAAACTCGTGGATAGTAAATGTAATCCATTGACTGTGATTAATAAAAGTGTTATTATTATAATTTCAATAAAGCGTTATTGATTATAATATTAGTTTTGTCTTAATAACCTAAATCCAATAAACTAACATCCTAAGTTGTTTGATGAGTCTTGAACTGTATGTGGAGACATACAAGGATCAATGTTCGAGATACAACTTAAAGGGTCTATAGTATAGGGATAAGGTTGGGTACCTTATCCTGGTAACACTATGGATACGGCTCACTTTGTATTTGATACAAACGCAATGATCCAACGCGTTCGTGTAGGTGACATGCGAGTGAGGGTATCCCATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAACCACTAGATGTAACTCCGTTAACTAGTAAGGTTTCTATTTCATTAGGATGACCTAGGTAACTTAGTCTTAATCCTGAGTGTATTATGAACTCCTGTTTGTGAGGGATTGTCCTTTGATTTGTACTGGTGAGAGTGGCCAGATTGCCAACTCAATATGCTTATCATTTTGGGGACAAGACCGAGTGAGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCAACTTTTGGGTAAGTAGATGAGTGTTCCCTTAAATGGTGTCTCCGGGATTGAACAAAGGGTCCTACCCTCTCTATGGCACGAGAGGGGTTTTTCTGTTTATTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCATTGGTATTTAAGGACTAGAAGTAACCTAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGGACACTCGTGAAGGACTAACTTACTGTTATTGGTCTATATCCGTGAACATAGAAATATATCTACAGTGAGAAGAGTTCAGCTGTGAGTCTTTAGTGGAGTGTACACACAGTTAACGAATATTGATTAATGTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTGTAGCTTCTGATCTGTAGGTCCATTAGGTCCCCTTTCTAGCTCGTAA

mRNA sequence

ATGGAGGAATGTCCTCTTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCTGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCATTAGGTCCCCTTTCTAGCTCGTAA

Coding sequence (CDS)

ATGGAGGAATGTCCTCTTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCTGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCATTAGGTCCCCTTTCTAGCTCGTAA

Protein sequence

MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGPLGPLSSS

Homology

[Close]

BLAST of PI0008973.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL++MV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 39  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 98

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 99  EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 158

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 159 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 218

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQG 241

[Close]

BLAST of PI0008973.1 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0008973.1 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-75
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MEECPLSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           +EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ
Sbjct: 40  VEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ S QI H+A+KY+YNARM EG SVREHVL++MV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 180
           ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

Query: 181 SSGTKSAPSSSGTKKIQKKKGGKG 204
           +SGTKS PSSSG KK +KKKGG+G
Sbjct: 220 TSGTKSMPSSSGNKKWKKKKGGQG 242

The following BLAST results are available for this feature:

BLAST of PI0008973.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008973.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.6e-75	76.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.6e-75	76.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	1.6e-75	76.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.6e-75	76.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5A7V6N0	1.6e-75	76.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]

BLAST of PI0008973.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	3.3e-75	76.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	3.3e-75	76.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	3.3e-75	76.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	3.3e-75	76.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	3.3e-75	76.96	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008973.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 23..153 e-value: 2.6E-18 score: 66.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..194
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 11..198
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 11..198

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008973	PI0008973	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008973.1-exon	PI0008973.1-exon-chr03:20258591..20258619	exon
PI0008973.1-exon	PI0008973.1-exon-chr03:20263090..20263702	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008973.1-cds	PI0008973.1-cds-chr03:20258591..20258619	CDS
PI0008973.1-cds	PI0008973.1-cds-chr03:20263090..20263702	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008973.1	PI0008973.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding