PI0008335.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008335.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 14337096 .. 14337503 (+)
Sequence length	408
RNA-Seq Expression	PI0008335.1
Synteny	PI0008335.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTCCATGATGTACAGTCAGGGACTGGACATGTTACCTGACGACATAATGGGCACACGACCTGGTTGGTTGTTTGAGGGTAGGGCTGATTCAAGCAGTTCGAAGAGGAAACGGAGAGGGCAGACGTTTGAGACGGCGAAAATTATTCGTAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCCAAGATGCATGCTTGACACGTATGAAAGTCGTTAGACAACTGCAGGGAATCCCAGAGCTGAATAAACTAGATAGGGTTTGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGAAAGCATTTCTCGACGTCCCGGACGAGCTTAAATTGGATTACTGTACGGTCATTCTCCAAGATAACGCTTGA

mRNA sequence

ATGGAGTTTTCCATGATGTACAGTCAGGGACTGGACATGTTACCTGACGACATAATGGGCACACGACCTGGTTGGTTGTTTGAGGGTAGGGCTGATTCAAGCAGTTCGAAGAGGAAACGGAGAGGGCAGACGTTTGAGACGGCGAAAATTATTCGTAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCCAAGATGCATGCTTGACACGTATGAAAGTCGTTAGACAACTGCAGGGAATCCCAGAGCTGAATAAACTAGATAGGGTTTGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGAAAGCATTTCTCGACGTCCCGGACGAGCTTAAATTGGATTACTGTACGGTCATTCTCCAAGATAACGCTTGA

Coding sequence (CDS)

ATGGAGTTTTCCATGATGTACAGTCAGGGACTGGACATGTTACCTGACGACATAATGGGCACACGACCTGGTTGGTTGTTTGAGGGTAGGGCTGATTCAAGCAGTTCGAAGAGGAAACGGAGAGGGCAGACGTTTGAGACGGCGAAAATTATTCGTAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCCAAGATGCATGCTTGACACGTATGAAAGTCGTTAGACAACTGCAGGGAATCCCAGAGCTGAATAAACTAGATAGGGTTTGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGAAAGCATTTCTCGACGTCCCGGACGAGCTTAAATTGGATTACTGTACGGTCATTCTCCAAGATAACGCTTGA

Protein sequence

MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDNA

Homology

[Close]

BLAST of PI0008335.1 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 90/135 (66.67%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 1   MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYAND 60
           ME  MMYSQG+DML DDIMGTRP    EGR  SS SKRK+ GQ  ET +IIR+ ME++ND
Sbjct: 30  MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89

Query: 61  QLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPD 120
           +LKAI EW   QRQDA    ++VVRQLQ IPEL++ DRV  M+I+M NVDDMKAFLD+ D
Sbjct: 90  RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILD 149

Query: 121 ELKLDYCTVILQDNA 136
           ELKLDYCT+I QDNA
Sbjct: 150 ELKLDYCTIIFQDNA 164

[Close]

BLAST of PI0008335.1 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.9e-36
Identity = 80/134 (59.70%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYAND 60
           M+F  MY+QGL+M  DD+MGTR  W+ E R  SS SKRKR G + ++  IIR+ +EY N+
Sbjct: 190 MDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENE 249

Query: 61  QLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPD 120
           QL  IAEWP  QRQDA  TR +VVRQL+ IPEL  +DR   MRI+MRNVDDMKAFLDVP+
Sbjct: 250 QLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPN 309

Query: 121 ELKLDYCTVILQDN 135
            +K  YC++ILQ+N
Sbjct: 310 NMKYPYCSIILQEN 323

[Close]

BLAST of PI0008335.1 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.3e-34
Identity = 77/133 (57.89%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 2   EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQ 61
           +FS MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+A+EY N+Q
Sbjct: 511 DFSPMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 570

Query: 62  LKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDE 121
           L  IAEWP  QRQDA  TR ++V+QL+ IPEL  +DR   MRI+MRNVDDMKAFL+VPD 
Sbjct: 571 LHRIAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDN 630

Query: 122 LKLDYCTVILQDN 135
           +K  YC++ILQ+N
Sbjct: 631 MKYPYCSIILQEN 643

[Close]

BLAST of PI0008335.1 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.5e-34
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 2   EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQ 61
           +F  MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+AMEY N+Q
Sbjct: 140 DFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQ 199

Query: 62  LKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDE 121
           L  IAEWP  QRQDA  TR ++VRQL+ IPEL  +DR   MRI+MRNVDDMKAFL+VPD 
Sbjct: 200 LHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDN 259

Query: 122 LKLDYCTVILQDN 135
           +K  YC++ILQ+N
Sbjct: 260 MKYPYCSIILQEN 272

[Close]

BLAST of PI0008335.1 vs. ExPASy TrEMBL
Match: A0A5A7T4M9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001900 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.5e-34
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 6   MYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAI 65
           MYSQGL+M PD+++GTR   + EGR  SS SK KR GQ  ++  + R+A+EY N+QL  I
Sbjct: 71  MYSQGLNMSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRI 130

Query: 66  AEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDELKLD 125
           AEWP  QRQDA  T  +VVRQL+ IP+L  +DR C M I+MRNVDDMKAFLDVPD +K  
Sbjct: 131 AEWPVLQRQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYS 190

Query: 126 YCTVILQDN 135
           YC +ILQ+N
Sbjct: 191 YCNIILQEN 199

[Close]

BLAST of PI0008335.1 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-40
Identity = 90/135 (66.67%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 1   MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYAND 60
           ME  MMYSQG+DML DDIMGTRP    EGR  SS SKRK+ GQ  ET +IIR+ ME++ND
Sbjct: 30  MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89

Query: 61  QLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPD 120
           +LKAI EW   QRQDA    ++VVRQLQ IPEL++ DRV  M+I+M NVDDMKAFLD+ D
Sbjct: 90  RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILD 149

Query: 121 ELKLDYCTVILQDNA 136
           ELKLDYCT+I QDNA
Sbjct: 150 ELKLDYCTIIFQDNA 164

[Close]

BLAST of PI0008335.1 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 80/134 (59.70%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYAND 60
           M+F  MY+QGL+M  DD+MGTR  W+ E R  SS SKRKR G + ++  IIR+ +EY N+
Sbjct: 190 MDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENE 249

Query: 61  QLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPD 120
           QL  IAEWP  QRQDA  TR +VVRQL+ IPEL  +DR   MRI+MRNVDDMKAFLDVP+
Sbjct: 250 QLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPN 309

Query: 121 ELKLDYCTVILQDN 135
            +K  YC++ILQ+N
Sbjct: 310 NMKYPYCSIILQEN 323

[Close]

BLAST of PI0008335.1 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 77/133 (57.89%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 2   EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQ 61
           +FS MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+A+EY N+Q
Sbjct: 511 DFSPMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 570

Query: 62  LKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDE 121
           L  IAEWP  QRQDA  TR ++V+QL+ IPEL  +DR   MRI+MRNVDDMKAFL+VPD 
Sbjct: 571 LHRIAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDN 630

Query: 122 LKLDYCTVILQDN 135
           +K  YC++ILQ+N
Sbjct: 631 MKYPYCSIILQEN 643

[Close]

BLAST of PI0008335.1 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-33
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 2   EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQ 61
           +F  MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+AMEY N+Q
Sbjct: 140 DFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQ 199

Query: 62  LKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDE 121
           L  IAEWP  QRQDA  TR ++VRQL+ IPEL  +DR   MRI+MRNVDDMKAFL+VPD 
Sbjct: 200 LHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDN 259

Query: 122 LKLDYCTVILQDN 135
           +K  YC++ILQ+N
Sbjct: 260 MKYPYCSIILQEN 272

[Close]

BLAST of PI0008335.1 vs. NCBI nr
Match: KAA0038320.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-33
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 6   MYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAI 65
           MYSQGL+M PD+++GTR   + EGR  SS SK KR GQ  ++  + R+A+EY N+QL  I
Sbjct: 71  MYSQGLNMSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRI 130

Query: 66  AEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVDDMKAFLDVPDELKLD 125
           AEWP  QRQDA  T  +VVRQL+ IP+L  +DR C M I+MRNVDDMKAFLDVPD +K  
Sbjct: 131 AEWPVLQRQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYS 190

Query: 126 YCTVILQDN 135
           YC +ILQ+N
Sbjct: 191 YCNIILQEN 199

The following BLAST results are available for this feature:

BLAST of PI0008335.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008335.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V469	2.3e-40	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TDD6	5.9e-36	59.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	7.3e-34	57.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TYQ6	9.5e-34	58.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T4M9	9.5e-34	58.91	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0008335.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060529.1	4.8e-40	66.67	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
KAA0041444.1	1.2e-35	59.70	retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p...	[more]
KAA0034843.1	1.5e-33	57.89	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048280.1	2.0e-33	58.65	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038320.1	2.0e-33	58.91	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008335.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008335	PI0008335	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008335.1-exon	PI0008335.1-exon-chr06:14337096..14337503	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008335.1-cds	PI0008335.1-cds-chr06:14337096..14337503	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008335.1	PI0008335.1-protein	polypeptide