PI0006603.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0006603.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 5098084 .. 5100281 (+)
Sequence length	453
RNA-Seq Expression	PI0006603.1
Synteny	PI0006603.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACAAGGCTCCATTTCGTCCTTCTGACGTTATTGATTATATGAAGATTTATCATGGAGTGAATGTAAGCTATGACAAGGCTTGGAGAGGGTGTAAGATTGCTTTGAATTCCATTAGGGGTACTTCGGAGGCTTCATATGTCATGTTGTCAGCATTCTCGATTGCACTGATCCGAAACAACCCAGGTATACTTAATCACAAATACACTGTAATTCATATTTTGAAAAGATTACAATTGGTCAATACATAAAAAATACACTGTAATTTAAAAATATAGTCCAGTCAAACTGTTCCAGTGCAAATAAAGTCATACGCAACCAGGATGCACAAATAAAATGTAATTGAGCACAAACAGATACCACATATTCTAGTGTAAATGGAGTCATACGCAATCAGTATGCACAAATACAGTGTAATTGACCCCAAATATAGTGTAATTTACCCCAAACAGATACACTATATACTTTGTTATACGTAGACAAAATGCACAAATACTTTGTAATTTACCACACATACCCCAGCCTTTTCATTCGTCATGGGTGCTTTCCCTTTCCGTCTTTTCTCTTCTTTGCCTATGATTTGTTATAAACTGTCGATTGATTGTGCAATTCCATAAAACCTTTATATTTATCAAATTGATAGATTGTTACCTTTTTTCCATTCACTTTATCCTTTGTTCTCTTACCATTGAAAAAGAAGTTGAGGAGATTTCTCATAGTTCAAAACCAACTTTTTGACTTGAGTTTTCTTGTTGTTTCAGTGCAAAAAGAGATAGGGCAAATCTATAGATCAAGGAGCTAGCTGAAAGTTGTGAGTGACAAAATGAGTTTCAAATAAATTTCTAAACTTGTTTTATTAAAGTTATATTTATAGCATGCTTGAGTAGAGTGGTCAATTTATATTGAATAAACGATTTACAAAGCATGAGTTTCAAGTTCAGAAAAAGGTTGATGAGATTTATAAATAAGTATGCATGAGCTAAGTTCTAAAGCATTCGAATTAAATATGTTCCTTTGAACATGAGATTTTGGCATAAATTATTGATTGTTGAGTTTATGAGTTAATGTATGTTCAAGTAAGCATGAAACAAAAGTGGCATCGAGTTAAAAGCTCTAGTAGCTAAAGATAAGCTAAGGAAAGATTTAGGTAAGTATACTTTAAAGCCAAGCAAGAATTATTTATGTCTATATTCATAGAGATATATGTATACTAGATGTATGACTGTGATATGGAGCCAGTGGCTAGAGGCTAGAGGATACCATGTGCACATAAGATATGTTTCCGTTGTTGACATTCAGTGTACTCCGTGACAACGATGTTGTCATGAGTGCTAGGTGTGTCCTACTACAACAAGGATGATGAAAGTGTTGGGTGTTATGAGCATCGTTGTTTGCCTATGGCCGCATGCCCAAACATCTTCACACCACTTTACTTTATGCTTTCCTTTACTTTCCATGTCGCTTTCTTTTACTTTCTATGTCGCTTCCTTTACTTTTCCATGACATTACTAGTTAGTGACATTTCACACATTTTGATATGCAAGCCTGGCAGATCATAAAATGTTCAAAATGTACTATAGGGAGAGTCCCATCAGTCATATCCCCGACTAAGCCTTGTTGTACTCTTTGCAATCTAAGCTTTTCTTGCAATTGACAGTCTTCAATGCTTTCTTTAATGATGTTTTCAACAATTTACTTTCTCTCTCACGTTTTATAAAACCATTTTCTGTCAAAACGTGAAGGGAGGCTATATCATTCTGCGAGTTTGTCCGCAGGTTTCAAATTTTGAACGACTGACTTGTTCATCGAGCTAGAACAAGTGCCGCACAATCGCTTGCCTCGTCTTTGAAAGACTACGATTCTGACAAGTGGTATCAGAGCCTCATTGGCTTATTGACGGTTGAAACACAGACATGTCTGAAACGAAACAGATGGGCAAGGCCCACGCAGACCGATTGGTAAGATCGAAGAGCAGATGCTCTACCTGGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAAGTCGAATTGAAGAGATTTTCGAGAAAGCTGATGCTATTAATGCGGTAACCGGTCGCCTCGACGGATTACCTATAAACGAGTTGTTAACAAGAGTTGACACTCTAGAGGCAAAGGCTGCAAGAACTGGTAACTACGAGCGTGGGATAGTTCAACGGGCTCTGTTGCCCACATAG

mRNA sequence

ATGGACGACAAGGCTCCATTTCGTCCTTCTGACGTTATTGATTATATGAAGATTTATCATGGAGTGAATGTAAGCTATGACAAGGCTTGGAGAGGGTGTAAGATTGCTTTGAATTCCATTAGGGGTACTTCGGAGGCTTCATATGTCATGTTGTCAGCATTCTCGATTGCACTGATCCGAAACAACCCAGATGGGCAAGGCCCACGCAGACCGATTGGTAAGATCGAAGAGCAGATGCTCTACCTGGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAAGTCGAATTGAAGAGATTTTCGAGAAAGCTGATGCTATTAATGCGGTAACCGGTCGCCTCGACGGATTACCTATAAACGAGTTGTTAACAAGAGTTGACACTCTAGAGGCAAAGGCTGCAAGAACTGGTAACTACGAGCGTGGGATAGTTCAACGGGCTCTGTTGCCCACATAG

Coding sequence (CDS)

ATGGACGACAAGGCTCCATTTCGTCCTTCTGACGTTATTGATTATATGAAGATTTATCATGGAGTGAATGTAAGCTATGACAAGGCTTGGAGAGGGTGTAAGATTGCTTTGAATTCCATTAGGGGTACTTCGGAGGCTTCATATGTCATGTTGTCAGCATTCTCGATTGCACTGATCCGAAACAACCCAGATGGGCAAGGCCCACGCAGACCGATTGGTAAGATCGAAGAGCAGATGCTCTACCTGGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAAGTCGAATTGAAGAGATTTTCGAGAAAGCTGATGCTATTAATGCGGTAACCGGTCGCCTCGACGGATTACCTATAAACGAGTTGTTAACAAGAGTTGACACTCTAGAGGCAAAGGCTGCAAGAACTGGTAACTACGAGCGTGGGATAGTTCAACGGGCTCTGTTGCCCACATAG

Protein sequence

MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLPINELLTRVDTLEAKAARTGNYERGIVQRALLPT

Homology

[Close]

BLAST of PI0006603.1 vs. ExPASy TrEMBL
Match: A0A5A7TEC9 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00460 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIR 60
           M+DKAP RPSDVI+YMKI+HGVNVSYDKAWRG +IALNSIRGT E SY MLSAFS ALIR
Sbjct: 242 MNDKAPCRPSDVINYMKIHHGVNVSYDKAWRGREIALNSIRGTLEDSYAMLSAFSDALIR 301

Query: 61  NNPDGQGPRR 71
           NNP+     R
Sbjct: 302 NNPEADDEGR 311

[Close]

BLAST of PI0006603.1 vs. ExPASy TrEMBL
Match: A0A5A7V1Z6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G001170 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.0e-21
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIR 60
           M+DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIR
Sbjct: 212 MNDKAPCRPSDVINYMKIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIR 271

Query: 61  NNP 64
           NNP
Sbjct: 272 NNP 274

[Close]

BLAST of PI0006603.1 vs. ExPASy TrEMBL
Match: A0A5D3E198 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 2   DDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRN 61
           +DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRN
Sbjct: 161 NDKAPCRPSDVINYMKIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRN 220

Query: 62  NP 64
           NP
Sbjct: 221 NP 222

[Close]

BLAST of PI0006603.1 vs. ExPASy TrEMBL
Match: A0A1S4E392 (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIR 60
          M+DKAP RPSDVI+YMKI+H VN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIR
Sbjct: 1  MNDKAPCRPSDVINYMKIHHSVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIR 60

Query: 61 NNP 64
          NNP
Sbjct: 61 NNP 63

[Close]

BLAST of PI0006603.1 vs. ExPASy TrEMBL
Match: A0A5A7TY91 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00070 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.6e-20
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 58  LIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLP 117
           ++  NP G+  R  + ++EEQMLYLV+VPD +RFLESR+EEI EK D I+AV GR++GLP
Sbjct: 1   MLSANPSGKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 60

Query: 118 INELLTRVDTLEAKAARTGNYERG 142
           I ELL RVDTLE    RTG++ERG
Sbjct: 61  IQELLARVDTLEGIVGRTGSHERG 84

[Close]

BLAST of PI0006603.1 vs. NCBI nr
Match: KAA0039579.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-21
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIR 60
           M+DKAP RPSDVI+YMKI+HGVNVSYDKAWRG +IALNSIRGT E SY MLSAFS ALIR
Sbjct: 242 MNDKAPCRPSDVINYMKIHHGVNVSYDKAWRGREIALNSIRGTLEDSYAMLSAFSDALIR 301

Query: 61  NNPDGQGPRR 71
           NNP+     R
Sbjct: 302 NNPEADDEGR 311

[Close]

BLAST of PI0006603.1 vs. NCBI nr
Match: KAA0061274.1 (uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIR 60
           M+DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIR
Sbjct: 212 MNDKAPCRPSDVINYMKIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIR 271

Query: 61  NNP 64
           NNP
Sbjct: 272 NNP 274

[Close]

BLAST of PI0006603.1 vs. NCBI nr
Match: TYK29863.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-20
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 2   DDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRN 61
           +DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRN
Sbjct: 161 NDKAPCRPSDVINYMKIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRN 220

Query: 62  NP 64
           NP
Sbjct: 221 NP 222

[Close]

BLAST of PI0006603.1 vs. NCBI nr
Match: XP_016902696.1 (PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-20
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIR 60
          M+DKAP RPSDVI+YMKI+H VN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIR
Sbjct: 1  MNDKAPCRPSDVINYMKIHHSVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIR 60

Query: 61 NNP 64
          NNP
Sbjct: 61 NNP 63

[Close]

BLAST of PI0006603.1 vs. NCBI nr
Match: KAA0046219.1 (uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 58  LIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLP 117
           ++  NP G+  R  + ++EEQMLYLV+VPD +RFLESR+EEI EK D I+AV GR++GLP
Sbjct: 1   MLSANPSGKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 60

Query: 118 INELLTRVDTLEAKAARTGNYERG 142
           I ELL RVDTLE    RTG++ERG
Sbjct: 61  IQELLARVDTLEGIVGRTGSHERG 84

The following BLAST results are available for this feature:

BLAST of PI0006603.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006603.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEC9	2.1e-21	77.14	Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7V1Z6	6.0e-21	82.54	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3E198	3.0e-20	82.26	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S4E392	3.0e-20	80.95	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]
A0A5A7TY91	6.6e-20	60.71	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0006603.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039579.1	4.3e-21	77.14	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 prot...	[more]
KAA0061274.1	1.2e-20	82.54	uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa]	[more]
TYK29863.1	6.1e-20	82.26	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
XP_016902696.1	6.1e-20	80.95	PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo]	[more]
KAA0046219.1	1.4e-19	60.71	uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]	[more]

BLAST of PI0006603.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0006603	PI0006603	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006603.1-exon	PI0006603.1-exon-chr08:5098084..5098273	exon
PI0006603.1-exon	PI0006603.1-exon-chr08:5100019..5100281	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006603.1-cds	PI0006603.1-cds-chr08:5098084..5098273	CDS
PI0006603.1-cds	PI0006603.1-cds-chr08:5100019..5100281	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0006603.1	PI0006603.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding