PI0006027.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0006027.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Non-specific lipid-transfer protein
Location	chr08: 23256900 .. 23258045 (+)
Sequence length	1036
RNA-Seq Expression	PI0006027.1
Synteny	PI0006027.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAGATAAAAATTTACTAGAAATCAAATTATGTCCAATTCCCATAGTTTAAAAAAAAAAAAAGAGAGAGAGAGTAAACATTTAATATGAAGGGTAAATTATGAGAATTGGAAAAGTAAGTTATAATGAAAGGCGAAGGGGGATGGGTGCAGTGTGTGGAGTGAAGTGAAGACTCAACTACCACCAACTCCTCTTGTCTGGGTTAGCGACATAAATGCATGGAGTGTGTGATGAGTGGGCTATATAAAGACGGCAACCAGAAGGGGTTTCATCCACAGAGCGAGTGAGAGAGGAAGAGAAAAGCAAATAATTAGATTTTTTTGGAGTGAGTAGTAGTAGTAGAGATCAGAAAATTAAAGCAAAGAAAAAGATATGGAAATGAAGTTGAAGGGTTTGATGATTGTGGGGATTGTGATGATGTGTATGGTAGTGCTGGGTGAAGCGGGTGTGACGTGCGGGACAGTGGCTTCGTCAGTGGGGCCATGCATCCCATATTTGAGAAAACCAGTAGGTGCCGTTCCAGGATCATGTTGTGGTGGGATTAAGTCCCTCAACAGCCAAGCCTCCACCCCTGCCGATCGCCGCACGGCTTGCAGTTGCTTGAAGACTGCTGCCAGATCCATCGCCGGCCTCGACTATGGTGCCGCCGCTTCCCTTCCCAGCAAGTGTGGAGTCAGTATTCCTTACAAGATCAGCCCCAGCACCGACTGCACCAGGTACCTACCTATCTATCTATCTATTTCTAATTTTTTTCTAATAATATCCTAATTCCTTCATCTCTATCTGTTTCTAATTTTAATTTTAATTTTAATTTGTTTGGTTGCAGGGTGAACTAAATAAATCGTAACCACCGAAACCATCCTCCACCGCATGAATCTACTGCCTCATCATTATAATTATGATTATAATTATATAATTATAATTATTATATTAGTGGTCTTGGTAGCTTAATTAGCTTAGCTTTGAATGCTAAATACCAATAATAAACAGCATGGTCTACTTTGTTGTTTGATTTCCATGCTTTTTCTTTTTATTCTACTACCTGTACTGTGTTGTGTGTATGAGTATGCGATTCCAATGATTCCTATCATTGCGAATTCCAAATTATCAATCCTCAATTTAATAAAAAAATTTCCTTATTTTCT

mRNA sequence

GTTTAGATAAAAATTTACTAGAAATCAAATTATGTCCAATTCCCATAGTTTAAAAAAAAAAAAAGAGAGAGAGAGTAAACATTTAATATGAAGGGTAAATTATGAGAATTGGAAAAGTAAGTTATAATGAAAGGCGAAGGGGGATGGGTGCAGTGTGTGGAGTGAAGTGAAGACTCAACTACCACCAACTCCTCTTGTCTGGGTTAGCGACATAAATGCATGGAGTGTGTGATGAGTGGGCTATATAAAGACGGCAACCAGAAGGGGTTTCATCCACAGAGCGAGTGAGAGAGGAAGAGAAAAGCAAATAATTAGATTTTTTTGGAGTGAGTAGTAGTAGTAGAGATCAGAAAATTAAAGCAAAGAAAAAGATATGGAAATGAAGTTGAAGGGTTTGATGATTGTGGGGATTGTGATGATGTGTATGGTAGTGCTGGGTGAAGCGGGTGTGACGTGCGGGACAGTGGCTTCGTCAGTGGGGCCATGCATCCCATATTTGAGAAAACCAGTAGGTGCCGTTCCAGGATCATGTTGTGGTGGGATTAAGTCCCTCAACAGCCAAGCCTCCACCCCTGCCGATCGCCGCACGGCTTGCAGTTGCTTGAAGACTGCTGCCAGATCCATCGCCGGCCTCGACTATGGTGCCGCCGCTTCCCTTCCCAGCAAGTGTGGAGTCAGTATTCCTTACAAGATCAGCCCCAGCACCGACTGCACCAGGGTGAACTAAATAAATCGTAACCACCGAAACCATCCTCCACCGCATGAATCTACTGCCTCATCATTATAATTATGATTATAATTATATAATTATAATTATTATATTAGTGGTCTTGGTAGCTTAATTAGCTTAGCTTTGAATGCTAAATACCAATAATAAACAGCATGGTCTACTTTGTTGTTTGATTTCCATGCTTTTTCTTTTTATTCTACTACCTGTACTGTGTTGTGTGTATGAGTATGCGATTCCAATGATTCCTATCATTGCGAATTCCAAATTATCAATCCTCAATTTAATAAAAAAATTTCCTTATTTTCT

Coding sequence (CDS)

ATGGAAATGAAGTTGAAGGGTTTGATGATTGTGGGGATTGTGATGATGTGTATGGTAGTGCTGGGTGAAGCGGGTGTGACGTGCGGGACAGTGGCTTCGTCAGTGGGGCCATGCATCCCATATTTGAGAAAACCAGTAGGTGCCGTTCCAGGATCATGTTGTGGTGGGATTAAGTCCCTCAACAGCCAAGCCTCCACCCCTGCCGATCGCCGCACGGCTTGCAGTTGCTTGAAGACTGCTGCCAGATCCATCGCCGGCCTCGACTATGGTGCCGCCGCTTCCCTTCCCAGCAAGTGTGGAGTCAGTATTCCTTACAAGATCAGCCCCAGCACCGACTGCACCAGGGTGAACTAA

Protein sequence

MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN

Homology

[Close]

BLAST of PI0006027.1 vs. ExPASy Swiss-Prot
Match: Q43748 (Non-specific lipid-transfer protein OS=Beta vulgaris OX=161934 GN=IWF1' PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-26
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 14  VMMCMVV---LGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPADR 73
           ++MCM+V   L EA +TCG VAS + PCI YL+   G    +CCGGIKSLNS A++PADR
Sbjct: 13  LVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGP-SAACCGGIKSLNSAAASPADR 72

Query: 74  RTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           +TAC+CLK+AA SI G++YG AASLP +CGVS+PY ISP+T+C  ++
Sbjct: 73  KTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

[Close]

BLAST of PI0006027.1 vs. ExPASy Swiss-Prot
Match: P10976 (Non-specific lipid-transfer protein OS=Spinacia oleracea OX=3562 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-26
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 14  VMMCMVV---LGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPADR 73
           V++C+VV     EAG+TCG V+S + PCI YL+   G + G CCGGIK+LN+ A+T  DR
Sbjct: 13  VLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKG--GPLGGGCCGGIKALNAAAATTPDR 72

Query: 74  RTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           +TAC+CLK+AA +I G++YG AA LP  CGV IPY ISPST+C  V+
Sbjct: 73  KTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH 117

[Close]

BLAST of PI0006027.1 vs. ExPASy Swiss-Prot
Match: Q43194 (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-25
Identity = 63/122 (51.64%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVL-----GEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCG 60
           M   +K  + + +V     V+      EA VTCG V+S++GPC+ Y R         CC 
Sbjct: 1   MARSMKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCS 60

Query: 61  GIKSLNSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTR 118
           G++SLNS A T ADRR AC+CLK AAR I GL+ G AAS+PSKCGVSIPY IS STDC+R
Sbjct: 61  GVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSR 120

[Close]

BLAST of PI0006027.1 vs. ExPASy Swiss-Prot
Match: O24038 (Non-specific lipid-transfer protein 2 OS=Solanum pennellii OX=28526 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 67/120 (55.83%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLG--EAGVTCGTVASSVGPCIPYL--RKPVGAVPGSCCGG 60
           MEM  K   I   V++CMVV+      +TCG V S++ PC+PYL  R P+    G CCGG
Sbjct: 1   MEMVNK---IACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRGPL----GGCCGG 60

Query: 61  IKSLNSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRV 117
           +K L  QA T  DR+TAC+CLK+AA S  GLD G AASLPS C V+IPYKISPSTDC++V
Sbjct: 61  VKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKV 113

[Close]

BLAST of PI0006027.1 vs. ExPASy Swiss-Prot
Match: P19656 (Non-specific lipid-transfer protein OS=Zea mays OX=4577 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-25
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 8   LMIVGIVMMCMVVL----GEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQ 67
           L +V   ++ +V+L     EA ++CG VAS++ PCI Y R         CC G++SLN+ 
Sbjct: 7   LAVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNA 66

Query: 68  ASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           A T ADRR AC+CLK AA  ++GL+ G AAS+PSKCGVSIPY IS STDC+RVN
Sbjct: 67  ARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 120

[Close]

BLAST of PI0006027.1 vs. ExPASy TrEMBL
Match: A0A5D3DMS3 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00250 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           MEMKLKGLMIVGIVMMCMVVLGEA VTCG+VA+++GPCIPYLR P  +VP  CC GI+SL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           N QA+T ADRRTAC+CLK+AA+SI+G++Y AAA LP KCGVSI Y ISP+TDC+RVN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of PI0006027.1 vs. ExPASy TrEMBL
Match: A0A1S3B5F4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           MEMKLKGLMIVGIVMMCMVVLGEA VTCG+VA+++GPCIPYLR P  +VP  CC GI+SL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           N QA+T ADRRTAC+CLK+AA+SI+G++Y AAA LP KCGVSI Y ISP+TDC+RVN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of PI0006027.1 vs. ExPASy TrEMBL
Match: A0A6J1IX25 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.2e-38
Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           ME  +K  ++VG+V+MCMVV GEA ++CGTVASSV PCIPYLR P   +P +CC GI+SL
Sbjct: 1   MERSMKMAIVVGVVLMCMVV-GEAAISCGTVASSVAPCIPYLRNPSTGLPAACCSGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           NSQAST ADRRTAC+CLK+AA S++G++Y AA+SLPSKCGVSIPYKISPSTDC +VN
Sbjct: 61  NSQASTSADRRTACNCLKSAANSVSGINYNAASSLPSKCGVSIPYKISPSTDCNKVN 116

[Close]

BLAST of PI0006027.1 vs. ExPASy TrEMBL
Match: A0A0A0LF44 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.6e-37
Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MEMKLKGLM---IVGIVMMCMVVLGE-AGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGG 60
           MEMKLKGLM   IVGIVMMCMVV GE AG+TCG VASSV  CI YLR   G VP  CC G
Sbjct: 1   MEMKLKGLMIVGIVGIVMMCMVVQGEAAGMTCGKVASSVSGCIGYLRSAQGQVPQVCCNG 60

Query: 61  IKSLNSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRV 118
           I+SLNSQAST  DRR AC+CLK AA SI G++YGAAASLPSKCGVS+PYKISPSTDC +V
Sbjct: 61  IRSLNSQASTTVDRRIACNCLKAAAGSIEGINYGAAASLPSKCGVSVPYKISPSTDCAKV 120

[Close]

BLAST of PI0006027.1 vs. ExPASy TrEMBL
Match: A0A6J1F9Q5 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111442087 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 80/117 (68.38%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           ME  +K  +IVG+V+MCMVV GEA ++CGTVA SV PCI YL+ P   VP +CC GI+SL
Sbjct: 1   MERSMKMAIIVGVVLMCMVV-GEAAISCGTVARSVSPCISYLKNPSSGVPAACCNGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           NSQAST  DRRTAC+CLK+AA SI+G+++ AA+SLPSKCGVSIPYKISPSTDC++VN
Sbjct: 61  NSQASTSVDRRTACTCLKSAANSISGINFNAASSLPSKCGVSIPYKISPSTDCSKVN 116

[Close]

BLAST of PI0006027.1 vs. NCBI nr
Match: XP_008442324.1 (PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo] >TYK24911.1 non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           MEMKLKGLMIVGIVMMCMVVLGEA VTCG+VA+++GPCIPYLR P  +VP  CC GI+SL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           N QA+T ADRRTAC+CLK+AA+SI+G++Y AAA LP KCGVSI Y ISP+TDC+RVN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of PI0006027.1 vs. NCBI nr
Match: XP_022982607.1 (non-specific lipid-transfer protein 1-like [Cucurbita maxima])

HSP 1 Score: 167.2 bits (422), Expect = 8.7e-38
Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           ME  +K  ++VG+V+MCMVV GEA ++CGTVASSV PCIPYLR P   +P +CC GI+SL
Sbjct: 1   MERSMKMAIVVGVVLMCMVV-GEAAISCGTVASSVAPCIPYLRNPSTGLPAACCSGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           NSQAST ADRRTAC+CLK+AA S++G++Y AA+SLPSKCGVSIPYKISPSTDC +VN
Sbjct: 61  NSQASTSADRRTACNCLKSAANSVSGINYNAASSLPSKCGVSIPYKISPSTDCNKVN 116

[Close]

BLAST of PI0006027.1 vs. NCBI nr
Match: XP_011651835.1 (non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN58696.1 hypothetical protein Csa_001468 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-37
Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MEMKLKGLM---IVGIVMMCMVVLGE-AGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGG 60
           MEMKLKGLM   IVGIVMMCMVV GE AG+TCG VASSV  CI YLR   G VP  CC G
Sbjct: 1   MEMKLKGLMIVGIVGIVMMCMVVQGEAAGMTCGKVASSVSGCIGYLRSAQGQVPQVCCNG 60

Query: 61  IKSLNSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRV 118
           I+SLNSQAST  DRR AC+CLK AA SI G++YGAAASLPSKCGVS+PYKISPSTDC +V
Sbjct: 61  IRSLNSQASTTVDRRIACNCLKAAAGSIEGINYGAAASLPSKCGVSVPYKISPSTDCAKV 120

[Close]

BLAST of PI0006027.1 vs. NCBI nr
Match: XP_022935125.1 (non-specific lipid-transfer protein 1-like [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-36
Identity = 80/117 (68.38%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           ME  +K  +IVG+V+MCMVV GEA ++CGTVA SV PCI YL+ P   VP +CC GI+SL
Sbjct: 1   MERSMKMAIIVGVVLMCMVV-GEAAISCGTVARSVSPCISYLKNPSSGVPAACCNGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           NSQAST  DRRTAC+CLK+AA SI+G+++ AA+SLPSKCGVSIPYKISPSTDC++VN
Sbjct: 61  NSQASTSVDRRTACTCLKSAANSISGINFNAASSLPSKCGVSIPYKISPSTDCSKVN 116

[Close]

BLAST of PI0006027.1 vs. NCBI nr
Match: XP_023528122.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.6 bits (405), Expect = 8.1e-36
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MEMKLKGLMIVGIVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSL 60
           ME  +K  +IVG+V+MCMVV GEA +TCG VASSV PCIPYL+ P   VP +CC GI+SL
Sbjct: 1   MERSMKMAIIVGVVLMCMVV-GEAAITCGAVASSVAPCIPYLKNPSSGVPAACCNGIRSL 60

Query: 61  NSQASTPADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
           NSQAST  DRRTAC+CLK+AA SI G+++ AA+SLPS+CGV IPYKISPSTDC +VN
Sbjct: 61  NSQASTSVDRRTACTCLKSAASSIPGINFNAASSLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of PI0006027.1 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-24
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 13  IVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPADRRT 72
           ++ +C+V   +A ++CGTVA S+ PC  YL K  G VP SCC G+K+LNS A T  DR+ 
Sbjct: 12  VLTVCIVASVDAAISCGTVAGSLAPCATYLSKG-GLVPPSCCAGVKTLNSMAKTTPDRQQ 71

Query: 73  ACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRV 117
           AC C+++ A+SI+GL+   A+ LP KCGVSIPY IS ST+C  +
Sbjct: 72  ACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of PI0006027.1 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-20
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 13  IVMMCMVVLGEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPADRRT 72
           ++ + +V   +A +TCGTVASS+ PC+ YL K  G VP  CC G+K LN  A T  DR+ 
Sbjct: 12  VLTVFIVASVDAAITCGTVASSLSPCLGYLSKG-GVVPPPCCAGVKKLNGMAQTTPDRQQ 71

Query: 73  ACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRV 117
           AC CL++AA+   G++   A+ LP KCGVSIPY IS ST+C  +
Sbjct: 72  ACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATI 111

[Close]

BLAST of PI0006027.1 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-20
Identity = 50/109 (45.87%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 13  IVMMCMVVLG----EAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPA 72
           +++ CM+V G     A ++CG+V S++  CI Y+ +  G +P +CC G+K+LNS A T  
Sbjct: 10  LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQG-GVIPPACCSGVKNLNSIAKTTP 69

Query: 73  DRRTACSCLKTAARSI-AGLDYGAAASLPSKCGVSIPYKISPSTDCTRV 117
           DR+ AC+C++ AAR++ +GL+ G AA +P  CGV+IPYKIS ST+C  V
Sbjct: 70  DRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117

[Close]

BLAST of PI0006027.1 vs. TAIR 10
Match: AT3G51590.1 (lipid transfer protein 12 )

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 14  VMMCMVVL-------GEAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQAST 73
           ++ C++VL        E+ + CGTV S++  C+ YL    G +P  CC G+KSL   A T
Sbjct: 7   IITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNS-GPLPSQCCVGVKSLYQLAQT 66

Query: 74  PADRRTACSCLKTAARSIAGLDYGAAASLPSKCGVSIPYKISPSTDCTRVN 118
             DR+  C CLK A + I GL+    A+LP+ CGVSIPY IS ST+C  ++
Sbjct: 67  TPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116

[Close]

BLAST of PI0006027.1 vs. TAIR 10
Match: AT2G38530.1 (lipid transfer protein 2 )

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-17
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 13  IVMMCMVVLG----EAGVTCGTVASSVGPCIPYLRKPVGAVPGSCCGGIKSLNSQASTPA 72
           +V+ CM+V G     A ++CGTV  ++  CI YL +      G CC G+ +L + AST  
Sbjct: 10  MVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTP 69

Query: 73  DRRTACSCLKTAARSIA-GLDYGAAASLPSKCGVSIPYKISPSTDCTRV 117
           DR+ AC CL++AA+++  GL+   AA LPS C V+IPYKIS ST+C  V
Sbjct: 70  DRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTV 117

The following BLAST results are available for this feature:

BLAST of PI0006027.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43748	1.2e-26	58.88	Non-specific lipid-transfer protein OS=Beta vulgaris OX=161934 GN=IWF1' PE=3 SV=...	[more]
P10976	3.6e-26	56.07	Non-specific lipid-transfer protein OS=Spinacia oleracea OX=3562 PE=1 SV=2	[more]
Q43194	1.4e-25	51.64	Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV...	[more]
O24038	1.8e-25	55.83	Non-specific lipid-transfer protein 2 OS=Solanum pennellii OX=28526 GN=LTP2 PE=3...	[more]
P19656	3.0e-25	52.63	Non-specific lipid-transfer protein OS=Zea mays OX=4577 PE=1 SV=1	[more]

BLAST of PI0006027.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMS3	1.1e-41	75.21	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B5F4	1.1e-41	75.21	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3...	[more]
A0A6J1IX25	4.2e-38	70.09	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 ...	[more]
A0A0A0LF44	1.6e-37	75.21	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 P...	[more]
A0A6J1F9Q5	3.0e-36	68.38	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11144208...	[more]

BLAST of PI0006027.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442324.1	2.2e-41	75.21	PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo] >TYK24911.1...	[more]
XP_022982607.1	8.7e-38	70.09	non-specific lipid-transfer protein 1-like [Cucurbita maxima]	[more]
XP_011651835.1	3.3e-37	75.21	non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN58696.1 hypothetical...	[more]
XP_022935125.1	6.2e-36	68.38	non-specific lipid-transfer protein 1-like [Cucurbita moschata]	[more]
XP_023528122.1	8.1e-36	68.38	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0006027.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59320.1	4.5e-24	50.96	lipid transfer protein 3	[more]
AT5G59310.1	1.0e-20	49.04	lipid transfer protein 4	[more]
AT2G38540.1	5.1e-20	45.87	lipid transfer protein 1	[more]
AT3G51590.1	8.1e-18	42.34	lipid transfer protein 12	[more]
AT2G38530.1	4.0e-17	44.95	lipid transfer protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 104..115 score: 58.85 coord: 48..62 score: 45.64 coord: 86..103 score: 54.19 coord: 27..43 score: 50.5 coord: 69..84 score: 56.35
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 5..114
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 95..116
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 28..113 e-value: 3.4E-13 score: 59.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 28..113 e-value: 2.4E-9 score: 37.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 26..117 e-value: 9.0E-30 score: 104.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 26..116
None	No IPR available	PANTHER	PTHR33076:SF76	NON-SPECIFIC LIPID-TRANSFER PROTEIN 1-RELATED	coord: 5..114
None	No IPR available	CDD	cd01960	nsLTP1	coord: 26..114 e-value: 1.5818E-39 score: 125.155

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0006027	PI0006027	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006027.1-five_prime_utr	PI0006027.1-five_prime_utr-chr08:23256900..23257272	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006027.1-exon	PI0006027.1-exon-chr08:23256900..23257616	exon
PI0006027.1-exon	PI0006027.1-exon-chr08:23257727..23258045	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006027.1-cds	PI0006027.1-cds-chr08:23257273..23257616	CDS
PI0006027.1-cds	PI0006027.1-cds-chr08:23257727..23257736	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006027.1-three_prime_utr	PI0006027.1-three_prime_utr-chr08:23257737..23258045	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0006027.1	PI0006027.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0008289	lipid binding