PI0003424.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0003424.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 6538859 .. 6539086 (+)
Sequence length	174
RNA-Seq Expression	PI0003424.1
Synteny	PI0003424.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGAGCCTAGCAGGAAACTGTTAGAAGAAATGCAGAGAACACAAGCCATGACTCAAAGATCGGGAAGAAAAGACATTTTACGGGTGCTTTTCACCTTACTCCGTTCAATCATGGAGGGTATGTCTTAACTTTCCAAGTTCTTGGCACTCAACATTTCAAACAACATTGTAACTTCCACCGAACTAACATCATCAAACCTTTGGGCAAGAGAATCGGAATAA

mRNA sequence

ATGGAAAATGAGCCTAGCAGGAAACTGTTAGAAGAAATGCAGAGAACACAAGCCATGACTCAAAGATCGGGAAGAAAAGACATTTTACGGTTCTTGGCACTCAACATTTCAAACAACATTGTAACTTCCACCGAACTAACATCATCAAACCTTTGGGCAAGAGAATCGGAATAA

Coding sequence (CDS)

ATGGAAAATGAGCCTAGCAGGAAACTGTTAGAAGAAATGCAGAGAACACAAGCCATGACTCAAAGATCGGGAAGAAAAGACATTTTACGGTTCTTGGCACTCAACATTTCAAACAACATTGTAACTTCCACCGAACTAACATCATCAAACCTTTGGGCAAGAGAATCGGAATAA

Protein sequence

MENEPSRKLLEEMQRTQAMTQRSGRKDILRFLALNISNNIVTSTELTSSNLWARESE

Homology

[Close]

BLAST of PI0003424.1 vs. ExPASy TrEMBL
Match: A0A0A0L8G2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177930 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 52/77 (67.53%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MENEPSRKLLEEMQ-RTQAMTQRSGRKDIL------------------RFLALNISNNIV 58
          M+NEPSRKLLEEMQ RTQAMTQRSGRKDIL                  +FLALNISNNI 
Sbjct: 1  MQNEPSRKLLEEMQRRTQAMTQRSGRKDILWVFFTLLRSIMEGMPQLSKFLALNISNNIA 60

[Close]

BLAST of PI0003424.1 vs. NCBI nr
Match: KGN57326.2 (hypothetical protein Csa_009907 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 6.8e-12
Identity = 52/77 (67.53%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1   MENEPSRKLLEEMQ-RTQAMTQRSGRKDIL------------------RFLALNISNNIV 58
           M+NEPSRKLLEEMQ RTQAMTQRSGRKDIL                  +FLALNISNNI 
Sbjct: 67  MQNEPSRKLLEEMQRRTQAMTQRSGRKDILWVFFTLLRSIMEGMPQLSKFLALNISNNIA 126

The following BLAST results are available for this feature:

BLAST of PI0003424.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003424.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8G2	3.3e-12	67.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177930 PE=4 SV=1	[more]

BLAST of PI0003424.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57326.2	6.8e-12	67.53	hypothetical protein Csa_009907 [Cucumis sativus]	[more]

BLAST of PI0003424.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0003424	PI0003424	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003424.1-exon	PI0003424.1-exon-chr06:6538859..6538948	exon
PI0003424.1-exon	PI0003424.1-exon-chr06:6539003..6539086	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003424.1-cds	PI0003424.1-cds-chr06:6538859..6538948	CDS
PI0003424.1-cds	PI0003424.1-cds-chr06:6539003..6539086	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0003424.1	PI0003424.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding