PI0003408.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0003408.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	chr03: 516660 .. 517092 (+)
Sequence length	433
RNA-Seq Expression	PI0003408.1
Synteny	PI0003408.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTTTGTATTCCTCTTTCCCCAACTTCCAATTTCACTTTCTTCTAACTTTTTCTTTTTGTTTATTTAAACCCCAAATCCAATTTCCTCATTCATCCTCTTTCACTTCCGTTTTTTTATTTATTTTTCTTCTCTAATTTCAATGGATCCGATTGCTCTGACTCAGCTTGCCACCGGCCTGAGTGTGCTTGCCGGCGCCGTGGTCGTGAAGTCAGTCATCGAACAGAAACTGCCGATGGCTGGGTCGATGCCGAGGTGTCCGACATGTAATGGGTCGGGTCGGGTCACGTGTATATGTGTCCGGTGGTCGGATGGAGATGTTGGGTGCCGTTCATGTTCAGGGTCGGGTCGGATGTCGTGTAGAAGTTGTGGTGGTGGTGGGAGAGGACGACCGATCAGCGTACAATTATCGACGAGCCAATCCAACCGTTGA

mRNA sequence

CAATTTTGTATTCCTCTTTCCCCAACTTCCAATTTCACTTTCTTCTAACTTTTTCTTTTTGTTTATTTAAACCCCAAATCCAATTTCCTCATTCATCCTCTTTCACTTCCGTTTTTTTATTTATTTTTCTTCTCTAATTTCAATGGATCCGATTGCTCTGACTCAGCTTGCCACCGGCCTGAGTGTGCTTGCCGGCGCCGTGGTCGTGAAGTCAGTCATCGAACAGAAACTGCCGATGGCTGGGTCGATGCCGAGGTGTCCGACATGTAATGGGTCGGGTCGGGTCACGTGTATATGTGTCCGGTGGTCGGATGGAGATGTTGGGTGCCGTTCATGTTCAGGGTCGGGTCGGATGTCGTGTAGAAGTTGTGGTGGTGGTGGGAGAGGACGACCGATCAGCGTACAATTATCGACGAGCCAATCCAACCGTTGA

Coding sequence (CDS)

ATGGATCCGATTGCTCTGACTCAGCTTGCCACCGGCCTGAGTGTGCTTGCCGGCGCCGTGGTCGTGAAGTCAGTCATCGAACAGAAACTGCCGATGGCTGGGTCGATGCCGAGGTGTCCGACATGTAATGGGTCGGGTCGGGTCACGTGTATATGTGTCCGGTGGTCGGATGGAGATGTTGGGTGCCGTTCATGTTCAGGGTCGGGTCGGATGTCGTGTAGAAGTTGTGGTGGTGGTGGGAGAGGACGACCGATCAGCGTACAATTATCGACGAGCCAATCCAACCGTTGA

Protein sequence

MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDVGCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR

Homology

[Close]

BLAST of PI0003408.1 vs. ExPASy TrEMBL
Match: A0A5A7V5E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001460 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MD IALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTC GSGRVTC+CVRWSDGDV
Sbjct: 1  MDQIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCLCVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQS+R
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSHR 96

[Close]

BLAST of PI0003408.1 vs. ExPASy TrEMBL
Match: A0A0A0LKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351540 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.9e-43
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MD IAL+QLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTC GSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPI+VQLS SQSNR
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 96

[Close]

BLAST of PI0003408.1 vs. ExPASy TrEMBL
Match: A0A6J1BRL0 (uncharacterized protein LOC111005075 OS=Momordica charantia OX=3673 GN=LOC111005075 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MDP+ L QLATGLSV+AGAVVVKSV++QK PMAG +P CPTCNGSGRVTCICVRWSDGD 
Sbjct: 1  MDPMGLAQLATGLSVVAGAVVVKSVMDQK-PMAGPLPTCPTCNGSGRVTCICVRWSDGDF 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCRSC+GSGRMSCRSCGGGGRGRPI+VQLS  Q NR
Sbjct: 61 GCRSCAGSGRMSCRSCGGGGRGRPITVQLSAGQPNR 95

[Close]

BLAST of PI0003408.1 vs. ExPASy TrEMBL
Match: A0A5N6R398 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009371 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 71/96 (73.96%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          M PI LTQLATGLSVLAGAV+VKSV++QK PMAG  PRCP+CNG+GRVTC+C RWSDGDV
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCR+C+GSGRM CRSCGG G GRP+  QL     NR
Sbjct: 61 GCRACAGSGRMGCRSCGGTGTGRPLPAQLIVRPPNR 95

[Close]

BLAST of PI0003408.1 vs. ExPASy TrEMBL
Match: A0A2P5BPE6 (Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222020 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          M PI LTQLATGLSVLAGAV+VKSV++QK PMAG  PRCP+CNG+GRV+C+C RWSDGDV
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVSCLCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSN 96
          GCR+CSGSGRM+C SCGG G GRPI  Q++  + N
Sbjct: 61 GCRTCSGSGRMACSSCGGSGTGRPIPAQITVRRPN 94

[Close]

BLAST of PI0003408.1 vs. NCBI nr
Match: KAA0061011.1 (uncharacterized protein E6C27_scaffold501G001460 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MD IALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTC GSGRVTC+CVRWSDGDV
Sbjct: 1  MDQIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCLCVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQS+R
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSHR 96

[Close]

BLAST of PI0003408.1 vs. NCBI nr
Match: XP_004142934.1 (uncharacterized protein LOC101220122 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MD IAL+QLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTC GSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPI+VQLS SQSNR
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 96

[Close]

BLAST of PI0003408.1 vs. NCBI nr
Match: KAG6585227.1 (hypothetical protein SDJN03_17960, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020147.1 hypothetical protein SDJN02_16829, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MDPIAL+Q+ATGLSVLAGAVVVKSVIEQK PMA  MPRC TCNGSGRVTC+CVRWSDGDV
Sbjct: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQK-PMARPMPRCATCNGSGRVTCLCVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSN 96
          GCRSCSGSGRMSCRSCGGGGRGRPI+VQLS SQ N
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSASQPN 94

[Close]

BLAST of PI0003408.1 vs. NCBI nr
Match: XP_022132135.1 (uncharacterized protein LOC111005075 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 7.9e-37
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MDP+ L QLATGLSV+AGAVVVKSV++QK PMAG +P CPTCNGSGRVTCICVRWSDGD 
Sbjct: 1  MDPMGLAQLATGLSVVAGAVVVKSVMDQK-PMAGPLPTCPTCNGSGRVTCICVRWSDGDF 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCRSC+GSGRMSCRSCGGGGRGRPI+VQLS  Q NR
Sbjct: 61 GCRSCAGSGRMSCRSCGGGGRGRPITVQLSAGQPNR 95

[Close]

BLAST of PI0003408.1 vs. NCBI nr
Match: KGN62638.2 (hypothetical protein Csa_018726 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          MD IAL+QLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTC GSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGG 79
          GCRSCSGSGRMSCRSCGG
Sbjct: 61 GCRSCSGSGRMSCRSCGG 78

[Close]

BLAST of PI0003408.1 vs. TAIR 10
Match: AT5G43260.1 (chaperone protein dnaJ-related )

HSP 1 Score: 141.0 bits (354), Expect = 5.1e-34
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MDPIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCNGSGRVTCICVRWSDGDV 60
          M PI +TQLATG+SVLAGAV +KSV++QK PMAG  PRCPTCNG+GRVTC C RWSDGDV
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQK-PMAGQFPRCPTCNGTGRVTCFCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQSNR 97
          GCR CSGSGR +C +CGG G GRP+  Q++    NR
Sbjct: 61 GCRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNR 95

The following BLAST results are available for this feature:

BLAST of PI0003408.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003408.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5E2	1.6e-43	95.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LKQ8	7.9e-43	94.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351540 PE=4 SV=1	[more]
A0A6J1BRL0	3.8e-37	83.33	uncharacterized protein LOC111005075 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5N6R398	1.1e-31	73.96	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009371 PE=4 SV=1	[more]
A0A2P5BPE6	2.4e-31	72.63	Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia a...	[more]

BLAST of PI0003408.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061011.1	3.3e-43	95.83	uncharacterized protein E6C27_scaffold501G001460 [Cucumis melo var. makuwa]	[more]
XP_004142934.1	1.6e-42	94.79	uncharacterized protein LOC101220122 [Cucumis sativus]	[more]
KAG6585227.1	1.9e-38	89.47	hypothetical protein SDJN03_17960, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022132135.1	7.9e-37	83.33	uncharacterized protein LOC111005075 [Momordica charantia]	[more]
KGN62638.2	1.1e-33	96.15	hypothetical protein Csa_018726 [Cucumis sativus]	[more]

BLAST of PI0003408.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43260.1	5.1e-34	68.75	chaperone protein dnaJ-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..96
None	No IPR available	PANTHER	PTHR34687:SF4	BNAC09G17400D PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR34687	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0003408	PI0003408	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003408.1-five_prime_utr	PI0003408.1-five_prime_utr-chr03:516660..516801	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003408.1-exon	PI0003408.1-exon-chr03:516660..517092	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003408.1-cds	PI0003408.1-cds-chr03:516802..517092	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0003408.1	PI0003408.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane