PI0002988.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0002988.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr06: 16306797 .. 16307784 (+)
Sequence length	357
RNA-Seq Expression	PI0002988.1
Synteny	PI0002988.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCACAACTTAGACATGTAAACAATCATCTACTACCTGGACGAGCACACGGTTCACGGTATGCTATTTTATCTTAATTTAGATCAAACAGTAGTTTTAATACTAAATGAGTGATATAATTAATTCAAAATCTAAAATATTAGTTTATTAATACAGATGGAGAGACCAATTTTGTGTAACCAGATCAACTACTCATGTAGTTAGTGAGTATAGGTACATGTTTGACCTTCTTCAGCGTGATCAGGTACGTCAATACTAAAACTTGGATTTTTTTATACATTAGTATACATATATTTAGATATTTCAGATTATTTGGGAGCCTTACAAAAATATAATTGATAATTTACCCAATTTTTGTAAGAACGATCAAGATATATGGTGGACCATCAATCCTCTCATAAGTTTTCATATTGGTGAGTGACATTATCCTGATAGGGTGATCAGACAATTCGGTTTTAAACAAGATATCCCATCAGAATGCAATGCTGAGCCACTCTTACACAACATTAACTTGAGAGCCACGAATTGGTCAGACAAGGTTGCACATTTGGTAGTGTGATGGCAATCTCATAGAAGATTTATTGCGATGGGAGCTTTGATTCAGTAATTTAATCGGGATGTGACTCAAGAATACATCCACTAGTAAATAATATTATGAGGCTCTACATCACTTGACCGGGAGCAGTTGTGGGTCACCTGGTACGTATTTAAACATTGAATAATTGCTTTAAATTATTTACTCAATTAAATATTTTCTAATTTTTTTACAATTCACAGAGATTAAACAACAGAAGACTTTATGATGTTCCAGATGATCCACAACAAGTCCTTGATTTATGTAATAAGAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCCAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTATAAGAAGTGTCTCCAGTGA

mRNA sequence

ATGGCTCCACAACTTAGACATGTAAACAATCATCTACTACCTGGACGAGCACACGGTTCACGATGGAGAGACCAATTTTGTGTAACCAGATCAACTACTCATGTAGTTAGTGAGTATAGGTACATGTTTGACCTTCTTCAGCGTGATCAGAGATTAAACAACAGAAGACTTTATGATGTTCCAGATGATCCACAACAAGTCCTTGATTTATGTAATAAGAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCCAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTATAAGAAGTGTCTCCAGTGA

Coding sequence (CDS)

ATGGCTCCACAACTTAGACATGTAAACAATCATCTACTACCTGGACGAGCACACGGTTCACGATGGAGAGACCAATTTTGTGTAACCAGATCAACTACTCATGTAGTTAGTGAGTATAGGTACATGTTTGACCTTCTTCAGCGTGATCAGAGATTAAACAACAGAAGACTTTATGATGTTCCAGATGATCCACAACAAGTCCTTGATTTATGTAATAAGAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCCAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTATAAGAAGTGTCTCCAGTGA

Protein sequence

MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQRLNNRRLYDVPDDPQQVLDLCNKNERYMEEIHYMYDVPIVPPPVPGDVFEWKKLNSMKFTIMYKKCLQ

Homology

[Close]

BLAST of PI0002988.1 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 75/166 (45.18%), Postives = 82/166 (49.40%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL H NNHLLPGRA GSRW+DQFCVTR  THVVS+YRYMFDLLQRDQ          
Sbjct: 27  IAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKNVI 86

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 87  GNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG 146

[Close]

BLAST of PI0002988.1 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.6e-23
Identity = 73/196 (37.24%), Postives = 84/196 (42.86%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL H N+HLL GRA GSRWRDQFCV RS T+VV++YRYMFDLLQRDQ          
Sbjct: 170 IAPQLTHTNDHLLSGRALGSRWRDQFCVIRSATYVVNQYRYMFDLLQRDQIIWEPYKDVI 229

Query: 61  ------------------------------------------------------------ 100
                                                                       
Sbjct: 230 DNLPNFCKNGQDTWRTISPLICFYIGEWHHPDRGCTFSSTMRSRRRFMTIEVSIQQFDMD 289

[Close]

BLAST of PI0002988.1 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21
Identity = 72/198 (36.36%), Postives = 81/198 (40.91%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL HVN + L GRA+GSRWRDQFCVTRS THVVS+YRYMFDLLQ  Q          
Sbjct: 418 VAPQLLHVNANQLHGRAYGSRWRDQFCVTRSATHVVSQYRYMFDLLQPSQIVWEPYKTVI 477

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 478 DSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQQAVPRDCNTEPLLHNIDLR 537

[Close]

BLAST of PI0002988.1 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 71/198 (35.86%), Postives = 80/198 (40.40%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL HVN + L GRA+GSRWRDQFCVTRS THVVS+YRYMFDLLQ  Q          
Sbjct: 639 VAPQLLHVNANQLHGRAYGSRWRDQFCVTRSATHVVSQYRYMFDLLQPSQTISPLICFYI 698

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 699 GEWHHPDRVLRQFGKAVPRDCNTEPLLHNIDLRTADWLDRVAHLVMRWHNRRRFTATGPP 758

[Close]

BLAST of PI0002988.1 vs. ExPASy TrEMBL
Match: A0A5D3CT32 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00900 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 70/178 (39.33%), Postives = 78/178 (43.82%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL HVN + L GRA+GSRWRDQFCVTRS THVVS+YRYMFDLLQ  Q          
Sbjct: 468 VAPQLLHVNANQLHGRAYGSRWRDQFCVTRSATHVVSQYRYMFDLLQPSQFGIQQAVPRD 527

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 528 CNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNIS 587

[Close]

BLAST of PI0002988.1 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-27
Identity = 75/166 (45.18%), Postives = 82/166 (49.40%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL H NNHLLPGRA GSRW+DQFCVTR  THVVS+YRYMFDLLQRDQ          
Sbjct: 27  IAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKNVI 86

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 87  GNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG 146

[Close]

BLAST of PI0002988.1 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 73/196 (37.24%), Postives = 84/196 (42.86%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL H N+HLL GRA GSRWRDQFCV RS T+VV++YRYMFDLLQRDQ          
Sbjct: 170 IAPQLTHTNDHLLSGRALGSRWRDQFCVIRSATYVVNQYRYMFDLLQRDQIIWEPYKDVI 229

Query: 61  ------------------------------------------------------------ 100
                                                                       
Sbjct: 230 DNLPNFCKNGQDTWRTISPLICFYIGEWHHPDRGCTFSSTMRSRRRFMTIEVSIQQFDMD 289

[Close]

BLAST of PI0002988.1 vs. NCBI nr
Match: KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-21
Identity = 72/198 (36.36%), Postives = 81/198 (40.91%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL HVN + L GRA+GSRWRDQFCVTRS THVVS+YRYMFDLLQ  Q          
Sbjct: 418 VAPQLLHVNANQLHGRAYGSRWRDQFCVTRSATHVVSQYRYMFDLLQPSQIVWEPYKTVI 477

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 478 DSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQQAVPRDCNTEPLLHNIDLR 537

[Close]

BLAST of PI0002988.1 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 71/198 (35.86%), Postives = 80/198 (40.40%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL HVN + L GRA+GSRWRDQFCVTRS THVVS+YRYMFDLLQ  Q          
Sbjct: 639 VAPQLLHVNANQLHGRAYGSRWRDQFCVTRSATHVVSQYRYMFDLLQPSQTISPLICFYI 698

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 699 GEWHHPDRVLRQFGKAVPRDCNTEPLLHNIDLRTADWLDRVAHLVMRWHNRRRFTATGPP 758

[Close]

BLAST of PI0002988.1 vs. NCBI nr
Match: TYK14590.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-20
Identity = 70/178 (39.33%), Postives = 78/178 (43.82%), Query Frame = 0


Query: 1   MAPQLRHVNNHLLPGRAHGSRWRDQFCVTRSTTHVVSEYRYMFDLLQRDQ---------- 60
           +APQL HVN + L GRA+GSRWRDQFCVTRS THVVS+YRYMFDLLQ  Q          
Sbjct: 468 VAPQLLHVNANQLHGRAYGSRWRDQFCVTRSATHVVSQYRYMFDLLQPSQFGIQQAVPRD 527

Query: 61  ------------------------------------------------------------ 95
                                                                       
Sbjct: 528 CNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNIS 587

The following BLAST results are available for this feature:

BLAST of PI0002988.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002988.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBF8	2.0e-27	45.18	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DJV7	8.6e-23	37.24	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7UKC7	3.6e-21	36.36	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3DUI1	1.0e-20	35.86	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CT32	1.4e-20	39.33	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0002988.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038951.1	4.1e-27	45.18	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK23842.1	1.8e-22	37.24	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0055624.1	7.5e-21	36.36	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK27427.1	2.2e-20	35.86	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK14590.1	2.8e-20	39.33	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0002988.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0002988	PI0002988	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002988.1-exon	PI0002988.1-exon-chr06:16306797..16306858	exon
PI0002988.1-exon	PI0002988.1-exon-chr06:16306957..16307044	exon
PI0002988.1-exon	PI0002988.1-exon-chr06:16307578..16307784	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002988.1-cds	PI0002988.1-cds-chr06:16306797..16306858	CDS
PI0002988.1-cds	PI0002988.1-cds-chr06:16306957..16307044	CDS
PI0002988.1-cds	PI0002988.1-cds-chr06:16307578..16307784	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0002988.1	PI0002988.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance