PI0002360.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0002360.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Beta-galactosidase
Location	chr04: 30421011 .. 30421855 (-)
Sequence length	771
RNA-Seq Expression	PI0002360.1
Synteny	PI0002360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCAGAGCGGGGTAAACATAAAACCCAAGACACCGAATATGAGGAAACCAGAGCTAACCACGAGTACGTTGCCGCCGCTGATATGAATGCCGCCGTTGCCGTTGCCGCCGCTGATATGAATGCCGCCGTTGCCGTTGCCGCCGCCATGGAAAAGGTGGTCCAGAAGCTTCAGAAGATGCCGGCGGCCACGTCTGCCACCTCCGCAGAGTCGTCCGGTCAACACAACGCCGTAGATCTGCATCACGCGCCGCCGCTGCAGGGCGCGTGGACCCACGCGCCGCCGTCTGTGAGTCTCACCGCCCATACGAATGGCTTCGCCTTGCCGCCGCCAGTCCAACTGTCAAACCCTTCTGCCAATACGCACACTCACGCGCCGCCGCTGCCCTCCGACCATGGAGGGCCGCCTATTCCGACCACCCAGCTGCCGCTGTCTGTTAATCCTTCACAGCAGCCTTACTTCAGCGAGACCTCGGCGCAATCCAAGAACCCGGTAACTTCGTTCCCTCCATAGGTAATTTTTCAGGAGAAAAATTGAATGGCCAGAATTTTTTCTCTTGGTTCCAGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGACTGGTGAGATTCCCTGTCCTCCACCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAGGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAATAGGCAAGCCGCTCTTATACGTTGCTACAACAAAGGATCTCTGGGACTCCACTCAGAAACTCTACTCGAAACGTCAGAATACTTCCCGTCTTCATACCTTGAGAAAACAAGCCCATACAAACTAA

mRNA sequence

ATGGTATCAGAGCGGGGTAAACATAAAACCCAAGACACCGAATATGAGGAAACCAGAGCTAACCACGAGTACGTTGCCGCCGCTGATATGAATGCCGCCGTTGCCGTTGCCGCCGCTGATATGAATGCCGCCGTTGCCGTTGCCGCCGCCATGGAAAAGGTGGTCCAGAAGCTTCAGAAGATGCCGGCGGCCACGTCTGCCACCTCCGCAGAGTCGTCCGGTCAACACAACGCCGTAGATCTGCATCACGCGCCGCCGCTGCAGGGCGCGTGGACCCACGCGCCGCCGTCTGTGAGTCTCACCGCCCATACGAATGGCTTCGCCTTGCCGCCGCCAGTCCAACTGTCAAACCCTTCTGCCAATACGCACACTCACGCGCCGCCGCTGCCCTCCGACCATGGAGGGCCGCCTATTCCGACCACCCAGCTGCCGCTGTCTGTTAATCCTTCACAGCAGCCTTACTTCAGCGAGACCTCGGCGCAATCCAAGAACCCGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGACTGGTGAGATTCCCTGTCCTCCACCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAGGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAATAGGCAAGCCGCTCTTATACGTTGCTACAACAAAGGATCTCTGGGACTCCACTCAGAAACTCTACTCGAAACGTCAGAATACTTCCCGTCTTCATACCTTGAGAAAACAAGCCCATACAAACTAA

Coding sequence (CDS)

ATGGTATCAGAGCGGGGTAAACATAAAACCCAAGACACCGAATATGAGGAAACCAGAGCTAACCACGAGTACGTTGCCGCCGCTGATATGAATGCCGCCGTTGCCGTTGCCGCCGCTGATATGAATGCCGCCGTTGCCGTTGCCGCCGCCATGGAAAAGGTGGTCCAGAAGCTTCAGAAGATGCCGGCGGCCACGTCTGCCACCTCCGCAGAGTCGTCCGGTCAACACAACGCCGTAGATCTGCATCACGCGCCGCCGCTGCAGGGCGCGTGGACCCACGCGCCGCCGTCTGTGAGTCTCACCGCCCATACGAATGGCTTCGCCTTGCCGCCGCCAGTCCAACTGTCAAACCCTTCTGCCAATACGCACACTCACGCGCCGCCGCTGCCCTCCGACCATGGAGGGCCGCCTATTCCGACCACCCAGCTGCCGCTGTCTGTTAATCCTTCACAGCAGCCTTACTTCAGCGAGACCTCGGCGCAATCCAAGAACCCGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGACTGGTGAGATTCCCTGTCCTCCACCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAGGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAATAGGCAAGCCGCTCTTATACGTTGCTACAACAAAGGATCTCTGGGACTCCACTCAGAAACTCTACTCGAAACGTCAGAATACTTCCCGTCTTCATACCTTGAGAAAACAAGCCCATACAAACTAA

Protein sequence

MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQKMPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSANTHTHAPPLPSDHGGPPIPTTQLPLSVNPSQQPYFSETSAQSKNPSIKMFLEGRQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDSTQKLYSKRQNTSRLHTLRKQAHTN

Homology

[Close]

BLAST of PI0002360.1 vs. ExPASy TrEMBL
Match: A0A5D3DJM7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00420 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-44
Identity = 139/321 (43.30%), Postives = 160/321 (49.84%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E VAAA      A AA D     AVAAA+EK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETEPVAAA------AAAAVD----AAVAAAVEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +         L HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYAPPFDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGEI  PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY  T KDLWD+T
Sbjct: 241 RYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. ExPASy TrEMBL
Match: A0A5D3CIR0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00930 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 6.6e-44
Identity = 139/321 (43.30%), Postives = 162/321 (50.47%), Query Frame = 0


Query: 3   SERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAV--AVAAAMEKVVQKLQK 62
           SE+  ++T +    ET+   + V AA      A AAA ++AAV  AVAAAMEK++Q LQK
Sbjct: 354 SEQSNNETLENNLGETQIETDPVTAA------AAAAAGISAAVDAAVAAAMEKLLQNLQK 413

Query: 63  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 122
            P   +    +         L HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 414 PPIYPTGVVPQPYAPPFDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 473

Query: 123 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 182
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 474 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 533

Query: 183 -----ETSAQSKNP--------------------------------------SIKMFLEG 242
                E    SKNP                                      SIKMFLEG
Sbjct: 534 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 593

Query: 243 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGEI  PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY  T KDLWD+T
Sbjct: 594 RYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKDLWDTT 653

[Close]

BLAST of PI0002360.1 vs. ExPASy TrEMBL
Match: A0A5A7V3J5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00020 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-43
Identity = 135/321 (42.06%), Postives = 157/321 (48.91%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E V A         AAA    A AV AA+EK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETERVTA---------AAAAAGIAAAVDAAVEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +     +   L HAP + G W HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYASPSDQKLIHAPLVSGVWAHAPPPFHVTAHPVPFYAPLDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPETSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGE   PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY AT KDLWD+T
Sbjct: 241 RYQFGFLTGETVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYAATAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. ExPASy TrEMBL
Match: A0A5A7SL21 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00470 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.5e-43
Identity = 133/321 (41.43%), Postives = 155/321 (48.29%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E VAA                  A AAA+EK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETEPVAA------------------AAAAAVEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +     +   L HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYAPPSDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGE   PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY AT KDLWD+T
Sbjct: 241 RYQFGFLTGETVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYAATAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. ExPASy TrEMBL
Match: A0A5D3E603 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003080 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-42
Identity = 131/321 (40.81%), Postives = 153/321 (47.66%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E +AA                    AAAMEK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETEPIAA--------------------AAAMEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +     +     HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYAPPSDQKTIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGEI  PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY  T KDLWD+T
Sbjct: 241 RYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. NCBI nr
Match: TYK23439.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 6.1e-44
Identity = 139/321 (43.30%), Postives = 160/321 (49.84%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E VAAA      A AA D     AVAAA+EK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETEPVAAA------AAAAVD----AAVAAAVEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +         L HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYAPPFDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGEI  PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY  T KDLWD+T
Sbjct: 241 RYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. NCBI nr
Match: TYK11240.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-43
Identity = 139/321 (43.30%), Postives = 162/321 (50.47%), Query Frame = 0


Query: 3   SERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAV--AVAAAMEKVVQKLQK 62
           SE+  ++T +    ET+   + V AA      A AAA ++AAV  AVAAAMEK++Q LQK
Sbjct: 354 SEQSNNETLENNLGETQIETDPVTAA------AAAAAGISAAVDAAVAAAMEKLLQNLQK 413

Query: 63  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 122
            P   +    +         L HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 414 PPIYPTGVVPQPYAPPFDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 473

Query: 123 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 182
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 474 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 533

Query: 183 -----ETSAQSKNP--------------------------------------SIKMFLEG 242
                E    SKNP                                      SIKMFLEG
Sbjct: 534 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 593

Query: 243 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGEI  PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY  T KDLWD+T
Sbjct: 594 RYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKDLWDTT 653

[Close]

BLAST of PI0002360.1 vs. NCBI nr
Match: KAA0061447.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 6.7e-43
Identity = 135/321 (42.06%), Postives = 157/321 (48.91%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E V A         AAA    A AV AA+EK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETERVTA---------AAAAAGIAAAVDAAVEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +     +   L HAP + G W HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYASPSDQKLIHAPLVSGVWAHAPPPFHVTAHPVPFYAPLDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPETSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGE   PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY AT KDLWD+T
Sbjct: 241 RYQFGFLTGETVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYAATAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. NCBI nr
Match: KAA0025363.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 2.0e-42
Identity = 133/321 (41.43%), Postives = 155/321 (48.29%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E VAA                  A AAA+EK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETEPVAA------------------AAAAAVEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +     +   L HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYAPPSDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGE   PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY AT KDLWD+T
Sbjct: 241 RYQFGFLTGETVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYAATAKDLWDTT 300

[Close]

BLAST of PI0002360.1 vs. NCBI nr
Match: TYK31050.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 5.7e-42
Identity = 131/321 (40.81%), Postives = 153/321 (47.66%), Query Frame = 0


Query: 1   MVSERGKHKTQDTEYEETRANHEYVAAADMNAAVAVAAADMNAAVAVAAAMEKVVQKLQK 60
           MVSE+  ++T +    ET+   E +AA                    AAAMEK++Q LQK
Sbjct: 1   MVSEQSNNETLENNLGETQIETEPIAA--------------------AAAMEKLLQNLQK 60

Query: 61  MPAATSATSAESSGQHNAVDLHHAPPLQGAWTHAPPSVSLTAHTNGFALPPPVQLSNPSA 120
            P   +    +     +     HAP + GAW HAPP   +TAH   F  P  VQ SNPS 
Sbjct: 61  PPIYPTGVVPQPYAPPSDQKTIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSG 120

Query: 121 NTHTHAPPLPSDHGGPPI----PTTQLPLSVNPSQQPYFS-------------------- 180
           + H HAP   S      +      ++  L V+P QQP FS                    
Sbjct: 121 HPHPHAPSTSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNRSDIEAGESST 180

Query: 181 -----ETSAQSKNP--------------------------------------SIKMFLEG 240
                E    SKNP                                      SIKMFLEG
Sbjct: 181 HSKPTELPMYSKNPVTSFPNSQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEG 240

Query: 241 RQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTKDLWDST 255
           R QFGFLTGEI  PPPG+  ERLW+ EDS IRSMLINSME QIGKPLLY  T KDLWD+T
Sbjct: 241 RYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKDLWDTT 300

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BLAST of PI0002360.1 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-05
Identity = 17/70 (24.29%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 168 KMFLEGRQQFGFLTGEIPCPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATTK 227
           + FL   ++FGF+ G +P P P +   + W   ++ +   L+NSM  ++ + ++Y  T  
Sbjct: 50  RSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAH 109

Query: 228 DLWDSTQKLY 238
            +W+  ++++
Sbjct: 110 KMWEDLRRVF 119

The following BLAST results are available for this feature:

BLAST of PI0002360.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJM7	3.0e-44	43.30	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0...	[more]
A0A5D3CIR0	6.6e-44	43.30	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G0...	[more]
A0A5A7V3J5	3.3e-43	42.06	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00...	[more]
A0A5A7SL21	9.5e-43	41.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G...	[more]
A0A5D3E603	2.8e-42	40.81	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0...	[more]

BLAST of PI0002360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23439.1	6.1e-44	43.30	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK11240.1	1.4e-43	43.30	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0061447.1	6.7e-43	42.06	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0025363.1	2.0e-42	41.43	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK31050.1	5.7e-42	40.81	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of PI0002360.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	7.8e-05	24.29	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..163
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 166..246
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 166..246

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0002360	PI0002360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002360.1-exon	PI0002360.1-exon-chr04:30421011..30421286	exon
PI0002360.1-exon	PI0002360.1-exon-chr04:30421361..30421855	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002360.1-cds	PI0002360.1-cds-chr04:30421011..30421286	CDS
PI0002360.1-cds	PI0002360.1-cds-chr04:30421361..30421855	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0002360.1	PI0002360.1-protein	polypeptide