PI0002299.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0002299.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionClavata3/ESR (CLE) gene family member
Locationchr02: 22054496 .. 22054901 (+)
Sequence length406
RNA-Seq ExpressionPI0002299.1
SyntenyPI0002299.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATAATCATTTCCAAACCATCAATTATTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTGGTGCTTTGGCTTTCGGTTTTAGTCGTTTGTGTTACCTCTTTCGCGGGTGCTCGAAAGACGTTGTTTTTGGGTCACAACGGTGTTAGAGACAACAAAAACAGCTTGACGACTGAACTGGTGGAGATAATCAACAGGTGCAAGTACTCGAAGAACAACGTTAACGACCTCCATTGTTGTGAGTGCTTCCTCTTGAGTTCTAAGAAGATGATGATGATCAATAATAATAATGACACCAATTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

mRNA sequence

TTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATAATCATTTCCAAACCATCAATTATTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTGGTGCTTTGGCTTTCGGTTTTAGTCGTTTGTGTTACCTCTTTCGCGGGTGCTCGAAAGACGTTGTTTTTGGGTCACAACGGTGTTAGAGACAACAAAAACAGCTTGACGACTGAACTGGTGGAGATAATCAACAGGTGCAAGTACTCGAAGAACAACGTTAACGACCTCCATTGTTGTGAGTGCTTCCTCTTGAGTTCTAAGAAGATGATGATGATCAATAATAATAATGACACCAATTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTGGTGCTTTGGCTTTCGGTTTTAGTCGTTTGTGTTACCTCTTTCGCGGGTGCTCGAAAGACGTTGTTTTTGGGTCACAACGGTGTTAGAGACAACAAAAACAGCTTGACGACTGAACTGGTGGAGATAATCAACAGGTGCAAGTACTCGAAGAACAACGTTAACGACCTCCATTGTTGTGAGTGCTTCCTCTTGAGTTCTAAGAAGATGATGATGATCAATAATAATAATGACACCAATTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Protein sequence

MSGAMGLSKSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVEIINRCKYSKNNVNDLHCCECFLLSSKKMMMINNNNDTNFEEKRVVPTGPNPLHNK
Homology
BLAST of PI0002299.1 vs. ExPASy TrEMBL
Match: A0A0A0LXI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.6e-45
Identity = 98/110 (89.09%), Postives = 100/110 (90.91%), Query Frame = 0

Query: 1   MSGAMGLSKSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVE-IINRC 60
           MSGAMGLSKSSIL+ WLSVLVVCVTS AGARKTLFL HNGVRDNKNSLTT L E  INRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNN-VNDLHCCECFLLSSKKMMMINNNNDTNFEEKRVVPTGPNPLHN 109
           KYSKNN VNDLHCCECF LSSKKMMMI+NNN TNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of PI0002299.1 vs. ExPASy TrEMBL
Match: A0A5A7UXE2 (Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002000 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.8e-44
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = 0

Query: 1   MSGAMGLSKSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVE-IINRC 60
           MSGAMGLSKSSILV WLSVLVVCVTS AGARK LFLGHNGVRDNKNSLTT   E  INRC
Sbjct: 1   MSGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRC 60

Query: 61  KYSKNNVNDLHCCECFLLSSKK-MMMINNNNDTNFEEKRVVPTGPNPLHN 109
           KYSKNN NDLHCCECF LSSKK MMMINNNN TNFE+KRVVPTGPNPLHN
Sbjct: 61  KYSKNNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of PI0002299.1 vs. ExPASy TrEMBL
Match: A0A6J1KNU3 (putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=LOC111497330 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 9   KSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVEIINRCKYSKNNVND 68
           +SSILVL LSV  VC+ S  GARK LFL  +  RDN NSLT  + E   RCK  K     
Sbjct: 113 RSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDN-NSLTIAM-ENSRRCKSKK----- 172

Query: 69  LHCCECFLLSSKKMMMINNNNDTNFEEKRV 99
           L+CC CF  SS+K +   NN  ++ EEKR+
Sbjct: 173 LYCCGCFFSSSEKTI---NNATSSSEEKRL 191

BLAST of PI0002299.1 vs. ExPASy TrEMBL
Match: G7JT84 (Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g126940 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 23  CVTSFAGARKTLFLGH--NGVRDNKNSLTTELVEIINRCKYSKNNVNDLHCCECFLLSSK 82
           C+ S   ARKT+F+G+  +G +   +S    L + +++C + +      H   C+     
Sbjct: 17  CIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNHKRK-----HLSSCY----- 76

Query: 83  KMMMINNNNDTNFEEKRVVPTGPNPLHNK 110
                  NN ++ E+KRVVPTGPNPLHN+
Sbjct: 77  -------NNTSSSEDKRVVPTGPNPLHNR 88

BLAST of PI0002299.1 vs. ExPASy TrEMBL
Match: A0A396IGH6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0071381 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 23  CVTSFAGARKTLFLGH--NGVRDNKNSLTTELVEIINRCKYSKNNVNDLHCCECFLLSSK 82
           C+ S   ARKT+F+G+  +G +   +S    L + +++C + +      H   C+     
Sbjct: 17  CIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNHKRK-----HLSSCY----- 76

Query: 83  KMMMINNNNDTNFEEKRVVPTGPNPLHNK 110
                  NN ++ E+KRVVPTGPNPLHN+
Sbjct: 77  -------NNTSSSEDKRVVPTGPNPLHNR 88

BLAST of PI0002299.1 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_019832 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 98/110 (89.09%), Postives = 100/110 (90.91%), Query Frame = 0

Query: 1   MSGAMGLSKSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVE-IINRC 60
           MSGAMGLSKSSIL+ WLSVLVVCVTS AGARKTLFL HNGVRDNKNSLTT L E  INRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNN-VNDLHCCECFLLSSKKMMMINNNNDTNFEEKRVVPTGPNPLHN 109
           KYSKNN VNDLHCCECF LSSKKMMMI+NNN TNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of PI0002299.1 vs. NCBI nr
Match: KAA0058189.1 (Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (CLE) gene family member [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 9.9e-44
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = 0

Query: 1   MSGAMGLSKSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVE-IINRC 60
           MSGAMGLSKSSILV WLSVLVVCVTS AGARK LFLGHNGVRDNKNSLTT   E  INRC
Sbjct: 1   MSGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRC 60

Query: 61  KYSKNNVNDLHCCECFLLSSKK-MMMINNNNDTNFEEKRVVPTGPNPLHN 109
           KYSKNN NDLHCCECF LSSKK MMMINNNN TNFE+KRVVPTGPNPLHN
Sbjct: 61  KYSKNNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of PI0002299.1 vs. NCBI nr
Match: KAG6587715.1 (hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-16
Identity = 61/105 (58.10%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 5   MGLSKSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVEIINRCKYSKN 64
           M L++SSILVL LSV  VC+ S  GARK LFL  +  RDN NSLT  + E   RCK  K 
Sbjct: 1   MRLAQSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDN-NSLTIAM-ESSRRCKSKK- 60

Query: 65  NVNDLHCCECFLLSSKKMMMINNNNDTNFEEKRVVPTGPNPLHNK 110
               L+CCECF  SS+KM+   NN  ++ EEKRVVPTGPNPLHNK
Sbjct: 61  ----LYCCECFFSSSEKMI---NNATSSSEEKRVVPTGPNPLHNK 94

BLAST of PI0002299.1 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 9   KSSILVLWLSVLVVCVTSFAGARKTLFLGHNGVRDNKNSLTTELVEIINRCKYSKNNVND 68
           +SSILVL LSV  VC+ S  GARK LFL  +  RDN NSLT  + E   RCK  K     
Sbjct: 113 RSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDN-NSLTIAM-ENSRRCKSKK----- 172

Query: 69  LHCCECFLLSSKKMMMINNNNDTNFEEKRV 99
           L+CC CF  SS+K +   NN  ++ EEKR+
Sbjct: 173 LYCCGCFFSSSEKTI---NNATSSSEEKRL 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXI15.6e-4589.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1[more]
A0A5A7UXE24.8e-4488.18Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1KNU31.8e-0650.00putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=L... [more]
G7JT846.3e-0433.71Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g12... [more]
A0A396IGH66.3e-0433.71Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0071381 ... [more]
Match NameE-valueIdentityDescription
KGN65507.11.2e-4489.09hypothetical protein Csa_019832 [Cucumis sativus][more]
KAA0058189.19.9e-4488.18Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (... [more]
KAG6587715.13.9e-1658.10hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023003872.13.7e-0650.00putative receptor-like protein kinase At4g00960 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0002299PI0002299gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0002299.1-five_prime_utrPI0002299.1-five_prime_utr-chr02:22054496..22054571five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0002299.1-exonPI0002299.1-exon-chr02:22054496..22054901exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0002299.1-cdsPI0002299.1-cds-chr02:22054572..22054901CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0002299.1PI0002299.1-proteinpolypeptide