PI0000042.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0000042.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	chr02: 12594177 .. 12595556 (-)
Sequence length	1380
RNA-Seq Expression	PI0000042.1
Synteny	PI0000042.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAAATACCTTGCTTCATTTATAATCTTATCTTGGTATCAAAGTAGAAAAATGGCCAACGCCTCTTCGTCAACTACGCCAATCAACACACCAAGCTTCAATACTCCTTCACTGAATCAACTTCTAAATCAGGTAACTGTGATAAAACTCGAAAGAGAAAATTTTCTACTATGGAGGACAGTCGCCCTACCAATACTTCGGAGCCACAAACTTGAAGGATATATTCTAGGTGAAATTGCTTGCCCACCAAAGTTTCTTGGACAAAGCTCCACTACCATCAGTCCCACTGGGGGTACCTCCGCTGCTGAAACATCAAGCACTCAGACCGCCACGACTAGCAAAGCTGCGAGTCAAACCACTGGAGAAGCACCAGACCCAACATATGAATCATGGTTTGTAGTTGATCAACTACTTCTAGGCTGGCTGTATAACTCAATGCCCCAGAAGTTGCTACTCAACTAATGGGATATGAACATTGACTGGATCTGTGGAATGGAATACAAAAACCATTTGGCGTACAATCCAGAGCAGAGGAAGACTATCTTCGTCAAACCTTTCAACAAACACGAAAAAGTAATAACACTATGTCTGAGTATTTACGACTAATGAAATTACACTCTGATGGGATAAATGATGTTGAATATGGGATAAAGGATGGGATAGAAGATGGAATGGAATGGAATGGTGATTTGAAATGGAATGATGTGGAGTTGAGTGGTGGAGATGGATTATGGATTGTGGATCGCAGAGTGATTACGCGAACTAGAAGTACGCGATGTTGAAGAATATATTCAGGCGATCGTGAATCGTTTATCGTACAAGTTTTCCTCTTGCTCACCCAAGTATAAGTGGAGCAAAAGGTTTCCTAGATAAGCCAGGGTCGAACACAGGAAATTTCTATCAAAGGAGCTAAGTGAAGTGTGTGTTTACCAGGCGGTATGGATCAGATGTATAAAGCTAAGTAAAGGTGTATGCGAACCTAAACTACGTATTTACAAAGAGACATTTGCAGGGGAATGGGTTGTGGTTATGCAATCTAACTTGTATGTGAAGGAGGAAGGAACATGCTACACTTTAGGCGATCTACATGTATGGTTAATGTTCAACGCGATAAGGTTGAGGCGATTATCTCATAATTAAGGCGAATACCTCTCGGTACCAAACACCACACTTGTTCGCAATTCGAGATACAAATGATTGAGATATAACTACTTCCTTATCTAGGCATTCCTGATTATAATCATTATAATCAACTCTTAAGGCGGCCACCTCTCGGCGCCTAATGCCACAGTTACTTCCTCTCGGAATGTAAATGACAGAGTTAAAACGCCAGAATGAAGTTTGTTTCCAAACTTCATTCCACGCATGCTTAGTTATG

mRNA sequence

CTAAAAAATACCTTGCTTCATTTATAATCTTATCTTGGTATCAAAGTAGAAAAATGGCCAACGCCTCTTCGTCAACTACGCCAATCAACACACCAAGCTTCAATACTCCTTCACTGAATCAACTTCTAAATCAGGTAACTGTGATAAAACTCGAAAGAGAAAATTTTCTACTATGGAGGACAGTCGCCCTACCAATACTTCGGAGCCACAAACTTGAAGGATATATTCTAGGTGAAATTGCTTGCCCACCAAAGTTTCTTGGACAAAGCTCCACTACCATCAGTCCCACTGGGGGTACCTCCGCTGCTGAAACATCAAGCACTCAGACCGCCACGACTAGCAAAGCTGCGAGTCAAACCACTGGAGAAGCACCAGACCCAACATATGAATCATGGTTTGTAGTTGATCAACTACTTCTAGGCTGGCTGTATAACTCAATGCCCCAGAAGTTGCTACTCAACTAATGGGATATGAACATTGACTGGATCTGTGGAATGGAATACAAAAACCATTTGGCGTACAATCCAGAGCAGAGGAAGACTATCTTCGTCAAACCTTTCAACAAACACGAAAAAGTAATAACACTATGTCTGAGTATTTACGACTAATGAAATTACACTCTGATGGGATAAATGATGTTGAATATGGGATAAAGGATGGGATAGAAGATGGAATGGAATGGAATGGTGATTTGAAATGGAATGATGTGGAGTTGAGTGGTGGAGATGGATTATGGATTGTGGATCGCAGAGTGATTACGCGAACTAGAAGTACGCGATGTTGAAGAATATATTCAGGCGATCGTGAATCGTTTATCGTACAAGTTTTCCTCTTGCTCACCCAAGTATAAGTGGAGCAAAAGGTTTCCTAGATAAGCCAGGGTCGAACACAGGAAATTTCTATCAAAGGAGCTAAGTGAAGTGTGTGTTTACCAGGCGGTATGGATCAGATGTATAAAGCTAAGTAAAGGTGTATGCGAACCTAAACTACGTATTTACAAAGAGACATTTGCAGGGGAATGGGTTGTGGTTATGCAATCTAACTTGTATGTGAAGGAGGAAGGAACATGCTACACTTTAGGCGATCTACATGTATGGTTAATGTTCAACGCGATAAGGTTGAGGCGATTATCTCATAATTAAGGCGAATACCTCTCGGTACCAAACACCACACTTGTTCGCAATTCGAGATACAAATGATTGAGATATAACTACTTCCTTATCTAGGCATTCCTGATTATAATCATTATAATCAACTCTTAAGGCGGCCACCTCTCGGCGCCTAATGCCACAGTTACTTCCTCTCGGAATGTAAATGACAGAGTTAAAACGCCAGAATGAAGTTTGTTTCCAAACTTCATTCCACGCATGCTTAGTTATG

Coding sequence (CDS)

ATGGCCAACGCCTCTTCGTCAACTACGCCAATCAACACACCAAGCTTCAATACTCCTTCACTGAATCAACTTCTAAATCAGGTAACTGTGATAAAACTCGAAAGAGAAAATTTTCTACTATGGAGGACAGTCGCCCTACCAATACTTCGGAGCCACAAACTTGAAGGATATATTCTAGGTGAAATTGCTTGCCCACCAAAGTTTCTTGGACAAAGCTCCACTACCATCAGTCCCACTGGGGGTACCTCCGCTGCTGAAACATCAAGCACTCAGACCGCCACGACTAGCAAAGCTGCGAGTCAAACCACTGGAGAAGCACCAGACCCAACATATGAATCATGGTTTGTAGTTGATCAACTACTTCTAGGCTGGCTGTATAACTCAATGCCCCAGAAGTTGCTACTCAACTAA

Protein sequence

MANASSSTTPINTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYILGEIACPPKFLGQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWFVVDQLLLGWLYNSMPQKLLLN

Homology

[Close]

BLAST of PI0000042.1 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 5   SSSTTPINTPS-------FNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGY 64
           S+  TPI TP        F +P LNQLLNQ+T IK++R NFLLW+ +ALPILRS+KL  Y
Sbjct: 4   SNLPTPIVTPPAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDY 63

Query: 65  ILGEIACPPKFLGQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWFVV 124
           + G+  CPP  L  + T  +  G TS+  + +                  +PTYE+W VV
Sbjct: 64  LTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTL-----------------NPTYEAWIVV 118

Query: 125 DQLLLGWLYNSM 130
           D+LLLGWLYNSM
Sbjct: 124 DKLLLGWLYNSM 118

[Close]

BLAST of PI0000042.1 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. ExPASy TrEMBL
Match: A0A1S4E2K3 (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 5   SSSTTPINTPS-------FNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGY 64
           S+  TPI TP        F +P LNQLLNQ+T IK++R NFLLW+ +ALPILRS+KL  Y
Sbjct: 4   SNLPTPIVTPPAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDY 63

Query: 65  ILGEIACPPKFLGQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWFVV 124
           + G+  CPP  L  + T  +  G TS+  + +                  +PTYE+W VV
Sbjct: 64  LTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTL-----------------NPTYEAWIVV 118

Query: 125 DQLLLGWLYNSM 130
           D+LLLGWLYNSM
Sbjct: 124 DKLLLGWLYNSM 118

[Close]

BLAST of PI0000042.1 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

[Close]

BLAST of PI0000042.1 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MANASSSTTP--INTPSFNTPSLNQLLNQVTVIKLERENFLLWRTVALPILRSHKLEGYI 60
           MANA  +  P  +++  F+ P LNQ+LNQ+T +KL+R+N+LLW+T+ALPIL+ +KLEG++
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGEIACPPKFL---GQSSTTISPTGGTSAAETSSTQTATTSKAASQTTGEAPDPTYESWF 120
             E  CP  F+     S+TT++  G  +           T  A+S  T    +P +E W 
Sbjct: 61  TAETPCPSHFVLSASSSNTTVTEEGADA-----------TIGASSSITPRIVNPLFEQWV 120

Query: 121 VVDQLLLGWLYNSM 130
             D LLLGWLYNSM
Sbjct: 121 TTDLLLLGWLYNSM 123

The following BLAST results are available for this feature:

BLAST of PI0000042.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000042.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	1.9e-18	46.21	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S4E1U9	1.9e-18	42.54	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	1.9e-18	42.54	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1V2	1.9e-18	42.54	uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E2K3	1.9e-18	42.54	uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of PI0000042.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	4.0e-18	46.21	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_016902203.1	4.0e-18	42.54	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_016902205.1	4.0e-18	42.54	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]
XP_016902197.1	4.0e-18	42.54	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]
XP_016902204.1	4.0e-18	42.54	PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]	[more]

BLAST of PI0000042.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..107

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0000042	PI0000042	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000042.1-exon	PI0000042.1-exon-chr02:12594177..12595556	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000042.1-three_prime_utr	PI0000042.1-three_prime_utr-chr02:12594177..12595092	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000042.1-cds	PI0000042.1-cds-chr02:12595093..12595503	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000042.1-five_prime_utr	PI0000042.1-five_prime_utr-chr02:12595504..12595556	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0000042.1	PI0000042.1-protein	polypeptide