Moc11g31860.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g31860.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 23247979 .. 23249439 (-)
Sequence length	696
RNA-Seq Expression	Moc11g31860.1
Synteny	Moc11g31860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCACAACCACTCATCCCCGTCTTCAAAGGAGAAGGCTACGAATTCGTATGAGGACTCTACTCAAATCTCAAGACTTATGGGAGTTGGTGGAATAAGGCTATGCAAATCCCGAGCACGAAGGCAAGCTGCTGGAGAACAAGAAGAAGGATTCCAAGGCGTTTGTGATCATTCAACAGGCGGTCCATGACAGCGTCTTCTCGCGAATTGCAGCAGCAACAATGTCAAAGCAGACATGGTCTATTTTGTAGGAGTTCCAAGACAATTCAAAGGTCGTCATGGTGAGATTGCAATCACTCAGACGTGACTTTGAGACCTTGATGATGAAGAATGAAGAATAAGTCGCTAATTTTTTGTCAAGAGCAACGACAATAGTTAGTCAAATGTGGCCCTACGACGAGACGATTACCGACCAGATCATTGTTGAAAAGGTACTTAGAAGTTTGACTCCAAAATTTGATCATGTAGTAGCTGCCATAGAAGAATTAAAGGATTTGTGAGTTTTTACATTTGATGAACTAATGGAGTCTCTTTAAGCTCATGAGTCGAGGATTAATAGATTGCTCAAAAAGACCGAACAAAAAGCATTTCAGGTGAAAGAGGCAGCTCCCAAATCCGGACAAGGTGATCATTTGGTGAATCGAGGCTGTGGAAGAGGAGGATTTCGTGGTCAAGGTCGTGGTTTCTGAAGAGGCAGAGGAAGATTCAAAGGACAAAGGCAGTCCTACGAGCAAACAAGCAACAAGAATGAAGTTCGATGTTACCACTGCAAAAGATATGGTCACATAAAGACGGACTGCTGATACAATGATCAGAGAGCCAATTTCGCTATAGAGAAGAAAGTATCGACAAATGCTAGAAGTAGTAAGCTTTTTATGGCTCATGTTAAAAACTAACCAAAAGCCAAGTGGTGTCTTGTTTGTAGATAGTGGTTGCTCAAATCACATTACAGACAAGATCCATCTTCAGAAAACTTGATGAGGCAGAAAAGATGAAGGTGCAACTCAGAAACGACAAGGATCTACAAGTTGAAGGAAGAAGTACGGTGGGTATTGAAACTAGCCATGGTAAACTGAAGCTCCTTCATAATGTTCAATTTTTACCCGATTTAGGATACAATTTATTGAGTGTTGGACAACTAATGACTAGTGGACATTCCATAATATTTGATGATGATGTCTGTGTGATCAAAGATAAACAAACAAGTCAACAGATGGTTCGAGTTAAGATGACCCAAAGCAAAATGTTCCCATTCGAAGTCTCAAATGTGGGAAGTTTTGTTCTTGCTGCTGAAGGAAAAGATGACTCGAAGTTGTGTCACTTGCGATATGGGCATCTCAACATCAAGGGTTTGTCATTGCTAATCATAGAGGTATGGTTCTTGGGCTACCAAAAATTGTCTCTATTGATTTATGTGAAGGGTGCATTATGGAAAACAAATCCGGAAGTCTTTTCCTAG

mRNA sequence

ATGCGGCACAACCACTCATCCCCGTCTTCAAAGGAGAAGGCTACGAATTCGTATGAGGACTCTACTCAAATCTCAAGACTTATGGGAGTTGGTGGAATAAGGCTATGCAAATCCCGAGCACGAAGGCAAGCTGCTGGAGAACAAGAAGAAGGATTCCAAGGCATAGTGGTTGCTCAAATCACATTACAGACAAGATCCATCTTCAGAAAACTTGATGAGGCAGAAAAGATGAAGGTGCAACTCAGAAACGACAAGGATCTACAAGTTGAAGGAAGAAGTACGGTGGGTATTGAAACTAGCCATGGTAAACTGAAGCTCCTTCATAATGTTCAATTTTTACCCGATTTAGGATACAATTTATTGAGTGTTGGACAACTAATGACTAGTGGACATTCCATAATATTTGATGATGATGTCTGTGTGATCAAAGATAAACAAACAAGTCAACAGATGGTTCGAGTTAAGATGACCCAAAGCAAAATGTTCCCATTCGAAGTCTCAAATGTGGGAAGTTTTGTTCTTGCTGCTGAAGGAAAAGATGACTCGAAGTTGTGTCACTTGCGATATGGGCATCTCAACATCAAGGGTTTGTCATTGCTAATCATAGAGGTATGGTTCTTGGGCTACCAAAAATTGTCTCTATTGATTTATGTGAAGGGTGCATTATGGAAAACAAATCCGGAAGTCTTTTCCTAG

Coding sequence (CDS)

ATGCGGCACAACCACTCATCCCCGTCTTCAAAGGAGAAGGCTACGAATTCGTATGAGGACTCTACTCAAATCTCAAGACTTATGGGAGTTGGTGGAATAAGGCTATGCAAATCCCGAGCACGAAGGCAAGCTGCTGGAGAACAAGAAGAAGGATTCCAAGGCATAGTGGTTGCTCAAATCACATTACAGACAAGATCCATCTTCAGAAAACTTGATGAGGCAGAAAAGATGAAGGTGCAACTCAGAAACGACAAGGATCTACAAGTTGAAGGAAGAAGTACGGTGGGTATTGAAACTAGCCATGGTAAACTGAAGCTCCTTCATAATGTTCAATTTTTACCCGATTTAGGATACAATTTATTGAGTGTTGGACAACTAATGACTAGTGGACATTCCATAATATTTGATGATGATGTCTGTGTGATCAAAGATAAACAAACAAGTCAACAGATGGTTCGAGTTAAGATGACCCAAAGCAAAATGTTCCCATTCGAAGTCTCAAATGTGGGAAGTTTTGTTCTTGCTGCTGAAGGAAAAGATGACTCGAAGTTGTGTCACTTGCGATATGGGCATCTCAACATCAAGGGTTTGTCATTGCTAATCATAGAGGTATGGTTCTTGGGCTACCAAAAATTGTCTCTATTGATTTATGTGAAGGGTGCATTATGGAAAACAAATCCGGAAGTCTTTTCCTAG

Protein sequence

MRHNHSSPSSKEKATNSYEDSTQISRLMGVGGIRLCKSRARRQAAGEQEEGFQGIVVAQITLQTRSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVGQLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEGKDDSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALWKTNPEVFS

Homology

[Close]

BLAST of Moc11g31860.1 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 8.8e-42
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+LRN K+LQVEG+ TV IET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 422 KPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGN-RILTNVQYVPDIGYNLLSVG 481

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD  C+IK+KQT + + +VKMTQSKMFP EVSNV SF L A      K+
Sbjct: 482 QLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATNTTKN 541

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +S+L HLRYGHLNIKGLSLL      +G  K+S +   +G ++
Sbjct: 542 NSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISAINICEGCVY 583

[Close]

BLAST of Moc11g31860.1 vs. NCBI nr
Match: KAA0032274.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-41
Identity = 93/163 (57.06%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+L N K+LQVEG+ TVGIET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 235 KPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHGN-RILTNVQYVPDIGYNLLSVG 294

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD  C+IK+KQT + + +VKMTQSKMFP EVSNV SF L A      K+
Sbjct: 295 QLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVKSFALIATATNTTKN 354

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +SKL +LRYGHLNIKG SLL      +G  K+S +   +G ++
Sbjct: 355 NSKLWYLRYGHLNIKGFSLLKQRDMVIGLPKISAINICEGCVY 396

[Close]

BLAST of Moc11g31860.1 vs. NCBI nr
Match: KAA0045239.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK19267.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-41
Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++ +E EK+KV+L N K+LQVEG+ TVGIET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 151 KPVFKEFNEGEKLKVELENGKELQVEGKGTVGIETHHGN-RILTNVQYVPDIGYNLLSVG 210

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD  C+IK+KQT + +V+VKMTQSKMFP EV NV +F L A      K+
Sbjct: 211 QLMESGYSILFDDGACLIKNKQTERVLVKVKMTQSKMFPLEVLNVENFALTATATNTTKN 270

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +SKL +LRYGHLNIKGLSLL      +G  K++ +   +G ++
Sbjct: 271 NSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAINICEGCVY 312

[Close]

BLAST of Moc11g31860.1 vs. NCBI nr
Match: KAA0054939.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-40
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+L N K+LQVEG+  VGIET HG  ++L NVQF+PD+GYNLLSVG
Sbjct: 194 KPVFKELNEGEKLKVELGNGKELQVEGKGMVGIETHHGN-RILTNVQFVPDIGYNLLSVG 253

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD   +IK+KQT + +V+VKMTQSKMFP EVSNV SF L        K+
Sbjct: 254 QLMESGYSILFDDGAYLIKNKQTGRVLVKVKMTQSKMFPLEVSNVESFALTTTATNTTKN 313

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +S+L HLRYGHLNIKGLSLL      +G  K+S +   +G ++
Sbjct: 314 NSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISAINICEGCVY 355

[Close]

BLAST of Moc11g31860.1 vs. NCBI nr
Match: TYK00906.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-40
Identity = 93/163 (57.06%), Postives = 121/163 (74.23%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+L N K LQVEG+ TV IET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 28  KPVFKELNEGEKLKVELGNGKVLQVEGKGTVEIETHHGN-RILTNVQYVPDIGYNLLSVG 87

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM S +SI+FDD  C+IK+KQT + + +VKMTQSKMFP EVSNV SF L A      K+
Sbjct: 88  QLMESRYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATNTTKN 147

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +S+L HLRYGHLNIKGLSLL      +G  K+S +   KG ++
Sbjct: 148 NSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISAINICKGCVY 189

[Close]

BLAST of Moc11g31860.1 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+LRN K+LQVEG+ TV IET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 422 KPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGN-RILTNVQYVPDIGYNLLSVG 481

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD  C+IK+KQT + + +VKMTQSKMFP EVSNV SF L A      K+
Sbjct: 482 QLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATNTTKN 541

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +S+L HLRYGHLNIKGLSLL      +G  K+S +   +G ++
Sbjct: 542 NSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISAINICEGCVY 583

[Close]

BLAST of Moc11g31860.1 vs. ExPASy TrEMBL
Match: A0A5A7SM62 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001140 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 93/163 (57.06%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+L N K+LQVEG+ TVGIET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 235 KPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHGN-RILTNVQYVPDIGYNLLSVG 294

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD  C+IK+KQT + + +VKMTQSKMFP EVSNV SF L A      K+
Sbjct: 295 QLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVKSFALIATATNTTKN 354

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +SKL +LRYGHLNIKG SLL      +G  K+S +   +G ++
Sbjct: 355 NSKLWYLRYGHLNIKGFSLLKQRDMVIGLPKISAINICEGCVY 396

[Close]

BLAST of Moc11g31860.1 vs. ExPASy TrEMBL
Match: A0A5A7TVH1 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00750 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++ +E EK+KV+L N K+LQVEG+ TVGIET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 151 KPVFKEFNEGEKLKVELENGKELQVEGKGTVGIETHHGN-RILTNVQYVPDIGYNLLSVG 210

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD  C+IK+KQT + +V+VKMTQSKMFP EV NV +F L A      K+
Sbjct: 211 QLMESGYSILFDDGACLIKNKQTERVLVKVKMTQSKMFPLEVLNVENFALTATATNTTKN 270

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +SKL +LRYGHLNIKGLSLL      +G  K++ +   +G ++
Sbjct: 271 NSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAINICEGCVY 312

[Close]

BLAST of Moc11g31860.1 vs. ExPASy TrEMBL
Match: A0A5A7UN91 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00520 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.0e-41
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+L N K+LQVEG+  VGIET HG  ++L NVQF+PD+GYNLLSVG
Sbjct: 194 KPVFKELNEGEKLKVELGNGKELQVEGKGMVGIETHHGN-RILTNVQFVPDIGYNLLSVG 253

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM SG+SI+FDD   +IK+KQT + +V+VKMTQSKMFP EVSNV SF L        K+
Sbjct: 254 QLMESGYSILFDDGAYLIKNKQTGRVLVKVKMTQSKMFPLEVSNVESFALTTTATNTTKN 313

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +S+L HLRYGHLNIKGLSLL      +G  K+S +   +G ++
Sbjct: 314 NSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISAINICEGCVY 355

[Close]

BLAST of Moc11g31860.1 vs. ExPASy TrEMBL
Match: A0A5D3BRM6 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00690 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 93/163 (57.06%), Postives = 121/163 (74.23%), Query Frame = 0


Query: 65  RSIFRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVG 124
           + +F++L+E EK+KV+L N K LQVEG+ TV IET HG  ++L NVQ++PD+GYNLLSVG
Sbjct: 28  KPVFKELNEGEKLKVELGNGKVLQVEGKGTVEIETHHGN-RILTNVQYVPDIGYNLLSVG 87

Query: 125 QLMTSGHSIIFDDDVCVIKDKQTSQQMVRVKMTQSKMFPFEVSNVGSFVLAAEG----KD 184
           QLM S +SI+FDD  C+IK+KQT + + +VKMTQSKMFP EVSNV SF L A      K+
Sbjct: 88  QLMESRYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATNTTKN 147

Query: 185 DSKLCHLRYGHLNIKGLSLLIIEVWFLGYQKLSLLIYVKGALW 224
           +S+L HLRYGHLNIKGLSLL      +G  K+S +   KG ++
Sbjct: 148 NSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISAINICKGCVY 189

[Close]

BLAST of Moc11g31860.1 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 68  FRKLDEAEKMKVQLRNDKDLQVEGRSTVGIETSHGKLKLLHNVQFLPDLGYNLLSVGQLM 127
           F  LD   K  V   +   L VEG+  V I    GK K + NV F+P L  N+LS G+++
Sbjct: 297 FTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMV 356

Query: 128 TSGHSI 134
           +  +SI
Sbjct: 357 SKRYSI 362

The following BLAST results are available for this feature:

BLAST of Moc11g31860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27735.1	8.8e-42	57.67	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0032274.1	2.6e-41	57.06	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0045239.1	7.4e-41	55.83	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK19267.1 p...	[more]
KAA0054939.1	1.7e-40	57.06	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 p...	[more]
TYK00906.1	3.7e-40	57.06	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]

BLAST of Moc11g31860.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g31860.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWP2	4.3e-42	57.67	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SM62	1.2e-41	57.06	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TVH1	3.6e-41	55.83	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UN91	8.0e-41	57.06	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BRM6	1.8e-40	57.06	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Moc11g31860.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	2.7e-04	37.88	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g31860	Moc11g31860	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g31860.1.exon2	Moc11g31860.1.exon2	exon
Moc11g31860.1.exon1	Moc11g31860.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g31860.1	cds.Moc11g31860.1_2	CDS
cds.Moc11g31860.1	cds.Moc11g31860.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g31860.1	Moc11g31860.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding