Moc11g09320.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g09320.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	60S ribosomal protein L18a-like protein
Location	chr11: 6609034 .. 6611131 (+)
Sequence length	465
RNA-Seq Expression	Moc11g09320.1
Synteny	Moc11g09320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCAGGAGGAGAAAGCCGCCGCCGCCGCAGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCAGTACGGCACCTTCCAAGGCGTCGCCAATTATCCTCCGGTCGGATTTCCCCAGCCTATTCGCCCACCCGGCGCCTCTGACTCCTATGATCCTTCTCAATCTCAGCCCTACGCTCATGCCTATCAAGCTGTCCCTGGTAACCTCTTCTTCCTCAATTTTCCTTACTGTTTTTTGCCTGCTATTCGTTGTTTCTCTTTGGCTCTTGTGCAATTTCTTCGATCTAATGCTTTTCCGTTTGACTCGAACTACTGATTTCTGTTGCTCGGTCAAGTGCTTTGAGTTGAACTTGATTCTTGCCGAAGTAGCTCAAACTGGATGAGATTTTAAAGACGAGATGTATGAACACTTGCGTCCTAAACTTGATCTTACTTGAGTAACTTAGTTCTGTCCGGAAGCAAAATTATGATCTAATGAATGGTTATGTGCCAGAAATGAACGAGTGGAGTTAGTCATATATTCTTGATTCTCTGTATTTCAATTCAAATTCAACCTTCAGCTTCCTACTGCTACCAGGTGTTTGAGATTAGATCTCGCCTTTTCTTGTTCTGTGAATGTGCTTTACCTTGGTTTCTGCTTCGAAGTTTACAGTTCAAAATTGAAAAATAAGTAGGAAGCCACTTTCAACTCATTGTAAACAAAGATCGCAATAACATATAATAGTTTATCAATTGTTTAATTTGAAGCTTTTTGGTATAACGAAATATCGACAAAAAGTTTGGCAGGATTCTTACTTATAGACACGCGACTCTCTTTAAACTAAAAAATACTTGATTTTATCATTCTGAAATTCGCATGCTCTTTCCTTTTTGCATCTTAAGAAGAATATACGGAAATGAATGTCACCTTTTTATATATTTGCGTTGCGTGACAACTATTTTGTCATGTGTCTTATGTTCTGTCACTTTGTCATATTAACACTTTGTATCTCTCTCTTGAAGGAGAATCATCGTAAGATTTGATGTTATACTATTAAATTACGTTCAATATCATTGTATTTGGCTAGTGCTTCGTCTGACTTTTTTCTGAAATATGTACTATTGGCTTTGCTTAATATATCACTTATCAGTACACAGACATAAGTATTAGCTCAAGCTTTTTTTCTTCTAATTCTTTTCCAGGATATGCTATTGTCGAAGGAAGACCAGTGAGAGAGAGACGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTAAGTAGCTATAATTGTTGCAATTTACCAACATTTATGGAAAGTTACATTAGCATTGTTGTTAACAAGCCAGGTGAAACGGTTATGCCCACAGTTAAAATTTTCAGAGGTTACATGGTCAATGAATTATCATTTCAGAGGATTAGATGCTACAAATTCCATGTTATGAGCTAAAACCCGTCAGTGTCTAGATTGGAATGACATAGTTGCTACTTGCGTACTGCCTACTATTTATATCTTGCTATAGAAACTTTTTGCCCAGATTTTGCGTCTATAAATAACTGACCAGACAGGTTACTATCTGTGTTCGTAAGGTTCATTATTGGTTTCTTCATTGTTGGCATCCCGTGGTATGCTGGGGCAATTGTCATACTATGTGGCAGGGTAGACTACCGCGAGAAACCTGGATATGTTGCCTGCACAATTGCTGTGAGTAGCTTTTATTCCCCGTTCATTTTGGCTTTTTCAGATTCATGATGATGTTCTTATATCTTCAATCTAAATTTGCAATTCGTAAAAGAAGTGATTTTTGTGTTATACTTTTTTGCAACTTGCCAAAAATATAGATGTTTTGGCAAGTTCTCTGTTCAATAAAGATTTTGTTTAGTGAATTAAGGTTGTTTATTTACACTTTCTTTGTTTGGTTTTTATTTGAAATCTTAATCATAACAAGTGTTTACGTTCATCTACTTTTTTCAGTTTTGTTTTGAAAAAAGTTTAACTATATCTTTACATTCAACGTTAATGATATTACATTGTGTATCAGGCTATTCTTGGCACACTTGCACTTATTCTTGGCGTAACGAAGGGAGTTGATGTCTGGTAA

mRNA sequence

ATGAGCCAGGAGGAGAAAGCCGCCGCCGCCGCAGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCAGTACGGCACCTTCCAAGGCGTCGCCAATTATCCTCCGGTCGGATTTCCCCAGCCTATTCGCCCACCCGGCGCCTCTGACTCCTATGATCCTTCTCAATCTCAGCCCTACGCTCATGCCTATCAAGCTGTCCCTGGATATGCTATTGTCGAAGGAAGACCAGTGAGAGAGAGACGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTCATTATTGGTTTCTTCATTGTTGGCATCCCGTGGTATGCTGGGGCAATTGTCATACTATGTGGCAGGGTAGACTACCGCGAGAAACCTGGATATGTTGCCTGCACAATTGCTGCTATTCTTGGCACACTTGCACTTATTCTTGGCGTAACGAAGGGAGTTGATGTCTGGTAA

Coding sequence (CDS)

ATGAGCCAGGAGGAGAAAGCCGCCGCCGCCGCAGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCAGTACGGCACCTTCCAAGGCGTCGCCAATTATCCTCCGGTCGGATTTCCCCAGCCTATTCGCCCACCCGGCGCCTCTGACTCCTATGATCCTTCTCAATCTCAGCCCTACGCTCATGCCTATCAAGCTGTCCCTGGATATGCTATTGTCGAAGGAAGACCAGTGAGAGAGAGACGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTCATTATTGGTTTCTTCATTGTTGGCATCCCGTGGTATGCTGGGGCAATTGTCATACTATGTGGCAGGGTAGACTACCGCGAGAAACCTGGATATGTTGCCTGCACAATTGCTGCTATTCTTGGCACACTTGCACTTATTCTTGGCGTAACGAAGGGAGTTGATGTCTGGTAA

Protein sequence

MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGRVDYREKPGYVACTIAAILGTLALILGVTKGVDVW

Homology

[Close]

BLAST of Moc11g09320.1 vs. NCBI nr
Match: XP_022135554.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 320.5 bits (820), Expect = 8.1e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS
Sbjct: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR
Sbjct: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVACTIAAILGTLALILGVTKGVDVW
Sbjct: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 154

[Close]

BLAST of Moc11g09320.1 vs. NCBI nr
Match: XP_038896754.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 127/154 (82.47%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPG SDS DPSQ 
Sbjct: 1   MSQEDK-SAAVGVVVHHHHESNSGHPLYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQY 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQAVPGY IVEGRPVRERRLPCCGIGIGWFLFIIGFF+  IPWYAGAI+ILCGR
Sbjct: 61  QDYAHGYQAVPGYGIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVAC IAA+L T+A+I G T+  D W
Sbjct: 121 VDYREKPGYVACLIAAVLATVAIIFGATREADDW 153

[Close]

BLAST of Moc11g09320.1 vs. NCBI nr
Match: XP_008452440.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo] >KAA0064318.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa] >TYK20268.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 125/154 (81.17%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHESNS HP YGTFQGVANYPPV FPQP RPPG SDS DPSQ 
Sbjct: 1   MSQEDK-SAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQY 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIGFF+  IPWYAGAI+ILCGR
Sbjct: 61  QHYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVAC+IAA++ TLA+I G T+  DVW
Sbjct: 121 VDYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Moc11g09320.1 vs. NCBI nr
Match: XP_004146004.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN55009.1 hypothetical protein Csa_012352 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 119/154 (77.27%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MS+++K +AA GVVVHHHHESNS HP YGTFQGVANYPPVGF  P R PG  DS DPSQ 
Sbjct: 1   MSEQDK-SAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQY 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIGFF+  IPWYAGAI+I+CGR
Sbjct: 61  QHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVAC+IAA++ T+A+I G T+  DVW
Sbjct: 121 VDYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Moc11g09320.1 vs. NCBI nr
Match: XP_023536200.1 (60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60
Identity = 118/154 (76.62%), Postives = 127/154 (82.47%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHE N GHP YGTFQGVANYPPVGFPQP RPPG SD  D SQ 
Sbjct: 1   MSQEDK-SAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQP 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG FI+   WY GAI+ILCGR
Sbjct: 61  QQYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIG-FILPATWYIGAILILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           V YREKPGYVAC+IAA++ T+A+I G TKG DVW
Sbjct: 121 VHYREKPGYVACSIAAVIATVAIIFGATKGADVW 152

[Close]

BLAST of Moc11g09320.1 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-29
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 4   EEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPY 63
           +E+AA      V+  H+       YGTFQGVAN     FP P  PP       P  + P 
Sbjct: 2   DEEAAKPRDSTVNQQHQY-----YYGTFQGVAN-----FPTPTPPPQFMQPQHPITTFP- 61

Query: 64  AHAYQ-----------------AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVG 123
            HAYQ                  VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF   G
Sbjct: 62  GHAYQNLQGHGGGVNYAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGG 121

Query: 124 IPWYAGAIVILCGRVDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           IPWY GA ++L   VD+REK GYVAC+IA+++  +A++LG+T  +++W
Sbjct: 122 IPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of Moc11g09320.1 vs. ExPASy TrEMBL
Match: A0A6J1C1R6 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111007453 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.9e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS
Sbjct: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR
Sbjct: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVACTIAAILGTLALILGVTKGVDVW
Sbjct: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 154

[Close]

BLAST of Moc11g09320.1 vs. ExPASy TrEMBL
Match: A0A5D3D9U1 (60S ribosomal protein L18a-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004080 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.7e-67
Identity = 125/154 (81.17%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHESNS HP YGTFQGVANYPPV FPQP RPPG SDS DPSQ 
Sbjct: 1   MSQEDK-SAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQY 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIGFF+  IPWYAGAI+ILCGR
Sbjct: 61  QHYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVAC+IAA++ TLA+I G T+  DVW
Sbjct: 121 VDYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Moc11g09320.1 vs. ExPASy TrEMBL
Match: A0A1S3BUZ1 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103493475 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.7e-67
Identity = 125/154 (81.17%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHESNS HP YGTFQGVANYPPV FPQP RPPG SDS DPSQ 
Sbjct: 1   MSQEDK-SAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQY 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIGFF+  IPWYAGAI+ILCGR
Sbjct: 61  QHYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVAC+IAA++ TLA+I G T+  DVW
Sbjct: 121 VDYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Moc11g09320.1 vs. ExPASy TrEMBL
Match: A0A0A0L1Y0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.7e-64
Identity = 119/154 (77.27%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MS+++K +AA GVVVHHHHESNS HP YGTFQGVANYPPVGF  P R PG  DS DPSQ 
Sbjct: 1   MSEQDK-SAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQY 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIGFF+  IPWYAGAI+I+CGR
Sbjct: 61  QHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           VDYREKPGYVAC+IAA++ T+A+I G T+  DVW
Sbjct: 121 VDYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Moc11g09320.1 vs. ExPASy TrEMBL
Match: A0A6J1INF5 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111477112 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-60
Identity = 118/154 (76.62%), Postives = 127/154 (82.47%), Query Frame = 0


Query: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHE N GHP YGTFQGVANYPPVGFPQP RPPG SD  D SQ 
Sbjct: 1   MSQEDK-SAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQP 60

Query: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120
           Q YAH YQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG FI+   WY GAI+ILCGR
Sbjct: 61  QNYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIG-FILPATWYIGAILILCGR 120

Query: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           V YREKPGYVAC+IAA++ T+A+I G TKG DVW
Sbjct: 121 VHYREKPGYVACSIAAVIATVAIIFGATKGADVW 152

[Close]

BLAST of Moc11g09320.1 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 180.6 bits (457), Expect = 9.3e-46
Identity = 89/144 (61.81%), Postives = 105/144 (72.92%), Query Frame = 0


Query: 20  ESNSGHPQYGTFQGVANYPP-------VGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG 79
           E  + H QYGTFQGV+NYPP        GFPQP  PPG  DS  P     YAH YQ VP 
Sbjct: 15  EEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGAPY----YAHGYQTVPV 74

Query: 80  Y-AIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCG-RVDYREKPGYV 139
           +  + EGRPVR+RRLPCCGIG+GWFLFI+GFF+  IPWY G  +++ G R+DYREKPGY+
Sbjct: 75  HGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREKPGYI 134

Query: 140 ACTIAAILGTLALILGVTKGVDVW 155
           ACTIAAIL T+A+ILGV+KG D W
Sbjct: 135 ACTIAAILATIAVILGVSKGADDW 154

[Close]

BLAST of Moc11g09320.1 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-37
Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 28  YGTFQGVANYPP------------VGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPGYAI 87
           YGTFQGV  YPP            +G PQP  PPG S  +D S  Q Y   +Q V GY +
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPG-SPHHDISVHQ-YIQEHQTVAGYPV 75

Query: 88  VEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGRVDYREKPGYVACTIA 147
            +GRP R+ RLPCCG+G+GWFLFIIGF +  IPWY G  +++C R+D REKPGYVACTIA
Sbjct: 76  SQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIA 135

Query: 148 AILGTLALILGVTKGVDVW 155
           A++ T+ ++ GV  G  VW
Sbjct: 136 AVVATITIVFGVMGGRGVW 152

[Close]

BLAST of Moc11g09320.1 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-30
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 4   EEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPY 63
           +E+AA      V+  H+       YGTFQGVAN     FP P  PP       P  + P 
Sbjct: 2   DEEAAKPRDSTVNQQHQY-----YYGTFQGVAN-----FPTPTPPPQFMQPQHPITTFP- 61

Query: 64  AHAYQ-----------------AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVG 123
            HAYQ                  VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF   G
Sbjct: 62  GHAYQNLQGHGGGVNYAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGG 121

Query: 124 IPWYAGAIVILCGRVDYREKPGYVACTIAAILGTLALILGVTKGVDVW 155
           IPWY GA ++L   VD+REK GYVAC+IA+++  +A++LG+T  +++W
Sbjct: 122 IPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of Moc11g09320.1 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-26
Identity = 67/149 (44.97%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 4   EEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPY 63
           +E+AA      V+  H+       YGTFQGVAN     FP P  PP       P  + P 
Sbjct: 2   DEEAAKPRDSTVNQQHQY-----YYGTFQGVAN-----FPTPTPPPQFMQPQHPITTFP- 61

Query: 64  AHAYQ-----------------AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVG 123
            HAYQ                  VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF   G
Sbjct: 62  GHAYQNLQGHGGGVNYAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGG 121

Query: 124 IPWYAGAIVILCGRVDYREKPGYVACTIA 136
           IPWY GA ++L   VD+REK GYVAC+IA
Sbjct: 122 IPWYLGAFIVLVTSVDHREKAGYVACSIA 139

[Close]

BLAST of Moc11g09320.1 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-24
Identity = 72/210 (34.29%), Postives = 96/210 (45.71%), Query Frame = 0


Query: 4   EEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPY 63
           +E+AA      V+  H+       YGTFQGVAN     FP P  PP       P  + P 
Sbjct: 2   DEEAAKPRDSTVNQQHQY-----YYGTFQGVAN-----FPTPTPPPQFMQPQHPITTFP- 61

Query: 64  AHAYQ-----------------AVPGYAIVEGRPVRERRLPCCGIGIGWFL--------- 123
            HAYQ                  VP Y +VE RP+ E  LPCCG+G+GWFL         
Sbjct: 62  GHAYQNLQGHGGGVNYAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFM 121

Query: 124 ---------------------------------FIIGFFIVGIPWYAGAIVILCGRVDYR 155
                                            FI+GF   GIPWY GA ++L   VD+R
Sbjct: 122 VVGNSSLLSWNLFVSSEILDELIASWNQYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHR 181

The following BLAST results are available for this feature:

BLAST of Moc11g09320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135554.1	8.1e-84	100.00	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_038896754.1	4.8e-68	82.47	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
XP_008452440.1	2.0e-66	81.17	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo] >KAA0064318.1 ...	[more]
XP_004146004.1	1.6e-63	77.27	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN55009.1 hypothetic...	[more]
XP_023536200.1	2.1e-60	76.62	60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc11g09320.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	2.7e-29	42.86	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of Moc11g09320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1R6	3.9e-84	100.00	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5D3D9U1	9.7e-67	81.17	60S ribosomal protein L18a-like protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BUZ1	9.7e-67	81.17	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103493475 ...	[more]
A0A0A0L1Y0	7.7e-64	77.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621210 PE=4 SV=1	[more]
A0A6J1INF5	1.4e-60	76.62	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]

BLAST of Moc11g09320.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	9.3e-46	61.81	Ribosomal protein L18ae family	[more]
AT1G53560.1	2.1e-37	52.52	Ribosomal protein L18ae family	[more]
AT1G29970.1	1.9e-30	42.86	60S ribosomal protein L18A-1	[more]
AT1G29970.2	3.7e-26	44.97	60S ribosomal protein L18A-1	[more]
AT1G29970.3	2.6e-24	34.29	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 16..154

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g09320	Moc11g09320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g09320.1.exon1	Moc11g09320.1.exon1	exon
Moc11g09320.1.exon2	Moc11g09320.1.exon2	exon
Moc11g09320.1.exon3	Moc11g09320.1.exon3	exon
Moc11g09320.1.exon4	Moc11g09320.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g09320.1	cds.Moc11g09320.1	CDS
cds.Moc11g09320.1	cds.Moc11g09320.1_2	CDS
cds.Moc11g09320.1	cds.Moc11g09320.1_3	CDS
cds.Moc11g09320.1	cds.Moc11g09320.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g09320.1	Moc11g09320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome