Moc10g05980.1 (mRNA) Bitter gourd (OHB3-1) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATCCTCATCGTCAAATCCAGATGCTGTGAATTCTTCACAAATAAACAAAATAGTAAATCCAGGGAGCAAAATCTCAACTGTCAAATTAAATGATGAGAATTTTTTGCTATGGAAACTCTAGATCTCAACAGCGCTTCAAGGGCACGATCTTGAACATCATATTACAGGGAAATCTGAAATTCCTCCTCAGATTATTTCGATTACTGGTGAGAATTCTTCCTCCACATTGACAGTAAATCCAAAGTATCATCAATGGATGAAGCAGGACAAATTGATTACCTCTTGGTTATTCAGCTCCATGTTCGAAGAAATTTTGGGAGAGATGATTCATTGCAACACTGCCAGAGAAGTTTGGCAGATTCTTGAAAACCTATACACATCAAGAAACCTTGCAAGAGTTATGCAACTCAAATCGAAGCTAGAAAACATCAAGAAAGGTAACCTACCTTTAAAAGATTACTTTCAAAAAGTAAAAGCGCTTGTTGATTCACTTGCTGCGGCTGGAAAAAAGGTTACTGTTGAAGATCATATTATGCATATCTTGACGGGTCTGAGAAGTGAATTTGAATCGACGGTTTCGGTTATCTCTGCGAGAACACAAACCCAGACACTTCAAGAAGTTTATTCTCTCCTTCTCTCACATGAAGGGCGTAATGAGAGGAATTCGATTAACACTGATGGTACCCTACCATCTGTTAATCTTACCCAGCAAACAAAGAATTCCAATTCTGCTCAAAGCATCGATGGTCAGCGTCCTTATATGCAGAATAACAGAAGCAAAAACAGTGGCAACCCTAATTTTAGAAGAAATTGGAATAGCAATAATCGTCCCCAATGTCAGATCTATGGCAAATTTGGGCATACTGCATTGAGATGCTATCTTCGGTTTGAGAAAACATTCTTGGGGCCAAATGGACAATCACATATGCAACATAAATTTTCTGGTGGATCTAATTCCAGCATAAATTCGAACATGACAGCATTTGGGAATCAACAACAGGCCTTCACCAATGGATTTCAGCCTAACTCAAATTCTCATATGGCTGCCTTTTTAGCTCAACAGGATTTTAATCGGGATACCAATTGGTACCCAGATTCAGGTGCAACAAATCATGTTACAAGTAATTTCAACAATCTGGCCACCAGCACAGAATACACGGGTGACAATCAAGTTCGGATTGGGAATGGTACAGGTTTGCAAGTACTTCACACTGGTTCATCTTTTGTAACTTCATCTAACTCTCTTCACTCTCCCAATACTAAACCTGTTTTTATCTTAGATAATCTACTCCATGTCCCCAATATCACAAAGAACCTCATAAGTGTCAGTCAATTTGCTCGTGATAACTCTGTATTCTTTGAATTTCACCCTTACCATTGCTTTGTGAAGGACCTTCAAACTGGCCACATTTTACTCCAAGGGAAGGTACATGATGGTCTATATCGATTTGAGTTGGAGAAGGCTGCTCCCACGTCCTCTGACAGAACTGCATCTGGTGTGTCTGTTGTCTCCTCCTCTAGTGTCAATACTCTTACACACAAAACATCTTTATCTCATGATTCTTTCTCTTTACCAATTAATTGTAATCTGTCTTTGTTTGATGTTTGGCATAGGCGATTAGGCCATGCTGCTCCAAATGTTGTTCATTCAATTCTTCGTTCATGTAATGTACCCATCCAAAATAAATCAAAATTCTATATGTCATGCTTGTGCTACTAGCAAATGTCATAGTCTTCCCTTTGTTGATTCAAATACTGTCTATTCTTCTCCACTTTCATTAGTAGTTGCTGATCTCTGGGGTCCTGCCTTTGTTTCATCCAGAAATGGGTTTAAATACTACATAAGTTTTGTGATGTTCATTCTCGATATACATGGATTTATTTCCTTACAACAAAATCCGAAGCTTTTAAAGCCATTACACTTTTCAAAGCACAAGCTGAAAAATCCTTGAATTGTTCTATTCGTCGCCTTCAAACTGATGGTGGGGGTGAGTTTTCTTCGTTTATTCCTTTTCTGAAATCCCATGGTATAGAACATAGAGTTTCTTGTCCATATACATCACAACAAAATGGCATCGTTGAGAGGAAACATAGGCATATTGTAGATACGGGTCTCACCATTCTTTCTCAAGCATCTATGCCTCTTACTTTTTGGGATGACGCCTTCTCCACGGCTGTGTATTTGATCAATCGCCTTCCTACCTCTGTTCTTTATGGTACCTCCCCAATTGAAACTCTCTTTGGTTTCCAACCTCACTACTTGTTTCTAAAAACGTTTGGATGCCTCTGTTTCCCATCCTTACGCTTATATAATCAACATAAAATTCAACCTCGCTCCTCTGCTTGTCTTTTCATTGGCTATAGTAATATTCACCATGGTTATAAATGTTTGTCACCTTCTGGTCGTTTATACATATCGCGTCATGTTTTATTTGACGAAACTGTTTTCCCGTATCTGCAGTTATTTCAAAAACCAACCTCTCATTCTTCTAGCCCTACAATCCAAACCACACTCCCTATTATATCACCAACTCCTTCATCACCATCACCTCAGCGTGACACTTCAGTTGTTCGTGACCCATCTGAATCTTGTGAATCTTCCCCTGATATTCATGTTGCATTGCCTGTCAATAATTATGAAAATGTACCTGCTGCAATACCTACTAATGACTTTGATGAAAATTCTAGTACCACTTTACCTACTGGTGTTGCTTCAACTTCTCAAGCAGTTTTCAAATTCAAATGTTCAGTCCACTGA ATGACATCCTCATCGTCAAATCCAGATGCTATCTCAACAGCGCTTCAAGGGCACGATCTTGAACATCATATTACAGGGAAATCTGAAATTCCTCCTCAGATTATTTCGATTACTGGTGAGAATTCTTCCTCCACATTGACAGTAAATCCAAAGTATCATCAATGGATGAAGCAGGACAAATTGATTACCTCTTGGTTATTCAGCTCCATGTTCGAAGAAATTTTGGGAGAGATGATTCATTGCAACACTGCCAGAGAAGTTTGGCAGATTCTTGAAAACCTATACACATCAAGAAACCTTGCAAGAGTTATGCAACTCAAATCGAAGCTAGAAAACATCAAGAAAGGTAACCTACCTTTAAAAGATTACTTTCAAAAAGTAAAAGCGCTTGTTGATTCACTTGCTGCGGCTGGAAAAAAGGTTACTGTTGAAGATCATATTATGCATATCTTGACGGGTCTGAGAAGTGAATTTGAATCGACGGTTTCGGTTATCTCTGCGAGAACACAAACCCAGACACTTCAAGAAGTTTATTCTCTCCTTCTCTCACATGAAGGGCGTAATGAGAGGAATTCGATTAACACTGATGGTACCCTACCATCTGTTAATCTTACCCAGCAAACAAAGAATTCCAATTCTGCTCAAAGCATCGATGGTCAGCGTCCTTATATGCAGAATAACAGAAGCAAAAACAGTGGCAACCCTAATTTTAGAAGAAATTGGAATAGCAATAATCGTCCCCAATGTCAGATCTATGGCAAATTTGGGCATACTGCATTGAGATGCTATCTTCGGTTTGAGAAAACATTCTTGGGGCCAAATGGACAATCACATATGCAACATAAATTTTCTGGTGGATCTAATTCCAGCATAAATTCGAACATGACAGCATTTGGGAATCAACAACAGGCCTTCACCAATGGATTTCAGCCTAACTCAAATTCTCATATGGCTGCCTTTTTAGCTCAACAGGATTTTAATCGGGATACCAATTGGTACCCAGATTCAGGTGCAACAAATCATGTTACAAGTAATTTCAACAATCTGGCCACCAGCACAGAATACACGGGTGACAATCAAGTTCGGATTGGGAATGGTACAGGTTTGCAAGTACTTCACACTGGTTCATCTTTTGTAACTTCATCTAACTCTCTTCACTCTCCCAATACTAAACCTGTTTTTATCTTAGATAATCTACTCCATGTCCCCAATATCACAAAGAACCTCATAAGTGTCAGTCAATTTGCTCGTGATAACTCTGTATTCTTTGAATTTCACCCTTACCATTGCTTTGTGAAGGACCTTCAAACTGGCCACATTTTACTCCAAGGGAAGGTACATGATGGTCTATATCGATTTGAGTTGGAGAAGGCTGCTCCCACGTCCTCTGACAGAACTGCATCTGGTGTGTCTGTTTTATTTCAAAAACCAACCTCTCATTCTTCTAGCCCTACAATCCAAACCACACTCCCTATTATATCACCAACTCCTTCATCACCATCACCTCAGCGTGACACTTCAGTTGTTCGTGACCCATCTGAATCTTGTGAATCTTCCCCTGATATTCATGTTGCATTGCCTGTCAATAATTATGAAAATGTACCTGCTGCAATACCTACTAATGACTTTGATGAAAATTCTAGTACCACTTTACCTACTGGTGTTGCTTCAACTTCTCAAGCAGTTTTCAAATTCAAATGTTCAGTCCACTGA ATGACATCCTCATCGTCAAATCCAGATGCTATCTCAACAGCGCTTCAAGGGCACGATCTTGAACATCATATTACAGGGAAATCTGAAATTCCTCCTCAGATTATTTCGATTACTGGTGAGAATTCTTCCTCCACATTGACAGTAAATCCAAAGTATCATCAATGGATGAAGCAGGACAAATTGATTACCTCTTGGTTATTCAGCTCCATGTTCGAAGAAATTTTGGGAGAGATGATTCATTGCAACACTGCCAGAGAAGTTTGGCAGATTCTTGAAAACCTATACACATCAAGAAACCTTGCAAGAGTTATGCAACTCAAATCGAAGCTAGAAAACATCAAGAAAGGTAACCTACCTTTAAAAGATTACTTTCAAAAAGTAAAAGCGCTTGTTGATTCACTTGCTGCGGCTGGAAAAAAGGTTACTGTTGAAGATCATATTATGCATATCTTGACGGGTCTGAGAAGTGAATTTGAATCGACGGTTTCGGTTATCTCTGCGAGAACACAAACCCAGACACTTCAAGAAGTTTATTCTCTCCTTCTCTCACATGAAGGGCGTAATGAGAGGAATTCGATTAACACTGATGGTACCCTACCATCTGTTAATCTTACCCAGCAAACAAAGAATTCCAATTCTGCTCAAAGCATCGATGGTCAGCGTCCTTATATGCAGAATAACAGAAGCAAAAACAGTGGCAACCCTAATTTTAGAAGAAATTGGAATAGCAATAATCGTCCCCAATGTCAGATCTATGGCAAATTTGGGCATACTGCATTGAGATGCTATCTTCGGTTTGAGAAAACATTCTTGGGGCCAAATGGACAATCACATATGCAACATAAATTTTCTGGTGGATCTAATTCCAGCATAAATTCGAACATGACAGCATTTGGGAATCAACAACAGGCCTTCACCAATGGATTTCAGCCTAACTCAAATTCTCATATGGCTGCCTTTTTAGCTCAACAGGATTTTAATCGGGATACCAATTGGTACCCAGATTCAGGTGCAACAAATCATGTTACAAGTAATTTCAACAATCTGGCCACCAGCACAGAATACACGGGTGACAATCAAGTTCGGATTGGGAATGGTACAGGTTTGCAAGTACTTCACACTGGTTCATCTTTTGTAACTTCATCTAACTCTCTTCACTCTCCCAATACTAAACCTGTTTTTATCTTAGATAATCTACTCCATGTCCCCAATATCACAAAGAACCTCATAAGTGTCAGTCAATTTGCTCGTGATAACTCTGTATTCTTTGAATTTCACCCTTACCATTGCTTTGTGAAGGACCTTCAAACTGGCCACATTTTACTCCAAGGGAAGGTACATGATGGTCTATATCGATTTGAGTTGGAGAAGGCTGCTCCCACGTCCTCTGACAGAACTGCATCTGGTGTGTCTGTTTTATTTCAAAAACCAACCTCTCATTCTTCTAGCCCTACAATCCAAACCACACTCCCTATTATATCACCAACTCCTTCATCACCATCACCTCAGCGTGACACTTCAGTTGTTCGTGACCCATCTGAATCTTGTGAATCTTCCCCTGATATTCATGTTGCATTGCCTGTCAATAATTATGAAAATGTACCTGCTGCAATACCTACTAATGACTTTGATGAAAATTCTAGTACCACTTTACCTACTGGTGTTGCTTCAACTTCTCAAGCAGTTTTCAAATTCAAATGTTCAGTCCACTGA MTSSSSNPDAISTALQGHDLEHHITGKSEIPPQIISITGENSSSTLTVNPKYHQWMKQDKLITSWLFSSMFEEILGEMIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSHMAAFLAQQDFNRDTNWYPDSGATNHVTSNFNNLATSTEYTGDNQVRIGNGTGLQVLHTGSSFVTSSNSLHSPNTKPVFILDNLLHVPNITKNLISVSQFARDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDGLYRFELEKAAPTSSDRTASGVSVLFQKPTSHSSSPTIQTTLPIISPTPSSPSPQRDTSVVRDPSESCESSPDIHVALPVNNYENVPAAIPTNDFDENSSTTLPTGVASTSQAVFKFKCSVH Homology
BLAST of Moc10g05980.1 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia]) HSP 1 Score: 615.1 bits (1585), Expect = 5.9e-172 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of Moc10g05980.1 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia]) HSP 1 Score: 611.3 bits (1575), Expect = 8.5e-171 Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
BLAST of Moc10g05980.1 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 360.5 bits (924), Expect = 2.6e-95 Identity = 209/453 (46.14%), Postives = 290/453 (64.02%), Query Frame = 0
BLAST of Moc10g05980.1 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 360.5 bits (924), Expect = 2.6e-95 Identity = 209/453 (46.14%), Postives = 290/453 (64.02%), Query Frame = 0
BLAST of Moc10g05980.1 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia]) HSP 1 Score: 357.8 bits (917), Expect = 1.7e-94 Identity = 208/382 (54.45%), Postives = 254/382 (66.49%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.5e-45 Identity = 153/485 (31.55%), Postives = 227/485 (46.80%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 2.2e-36 Identity = 146/505 (28.91%), Postives = 229/505 (45.35%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy TrEMBL
Match: A0A6J1C6N9 (dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1) HSP 1 Score: 615.1 bits (1585), Expect = 2.8e-172 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy TrEMBL
Match: A0A6J1C8R2 (dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1) HSP 1 Score: 611.3 bits (1575), Expect = 4.1e-171 Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 1.3e-95 Identity = 209/453 (46.14%), Postives = 290/453 (64.02%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 1.3e-95 Identity = 209/453 (46.14%), Postives = 290/453 (64.02%), Query Frame = 0
BLAST of Moc10g05980.1 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 8.2e-95 Identity = 208/382 (54.45%), Postives = 254/382 (66.49%), Query Frame = 0
BLAST of Moc10g05980.1 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 72.0 bits (175), Expect = 1.7e-12 Identity = 58/213 (27.23%), Postives = 103/213 (48.36%), Query Frame = 0
BLAST of Moc10g05980.1 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.5 bits (158), Expect = 1.6e-10 Identity = 58/229 (25.33%), Postives = 108/229 (47.16%), Query Frame = 0
BLAST of Moc10g05980.1 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 2.0e-05 Identity = 19/79 (24.05%), Postives = 47/79 (59.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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