Moc10g00200.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g00200.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	ribosome-binding factor PSRP1, chloroplastic
Location	chr10: 153052 .. 160193 (+)
Sequence length	1089
RNA-Seq Expression	Moc10g00200.1
Synteny	Moc10g00200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGTTGGAGCATAATTAGTTTAATAAGGATATGGGAAGGAAAAAGAAATGGTGGAGTGGCGTCCACAAAAACTCTATTTAATCTTTTATCCATTTGTTTTCAAAGCCAAAATCCCATCACTTTCTTTCTTCGATTTCCAAGTTTTCAAACAATGGCTACTCTCACCTCTTCCATGCACACTAATCTCCTTTCCGCTCCTTCTTCTTCTTCTACCTTTTCCACTTTCCCCGCTTCATTCTCTCTTCTCACTTCTACCAACTCCTCTGCCCTCAAAATCCACCCTCTTTCTTCCCATACTTCACCTTTCTTCAACTCCTGCAACTGCTTCACAACCATTCAGATTGCTCCCCGGAACCGCCATGCCGCAAACTCTTTCACTATTCGCATGTCCTGGGATGGCCCCCTCTCCTCTGTTAAATTAATTGTCCAAGGCAAGAATTTGGAGGTATTTCTACTTCCTCTTCACTGTTGCTTCTCACATAATGCAATATTCTCTTCAAATTCTTACTTTCACCATTTCGCATCTACTCTACTGACCTAAATTGTTCCACTCCTAGCTGTTGAACACTTCTTTACTTCATCAGTTTCTGAATCTACAGTCTTGCGCTCCTTCTTAGTAGGAGTAAGATTTTGCGAGAAATAAAAGTGGGGCAGTAATGAGCTACTCACGTACGTTTGAAGGATAAACTTCGTTATATTTAGCCTCATGAGAACCTAAATGTGATTCAGACTGAAAATGCTCACTAACTCACTGCTACCAATTATTGGATTGCACTGGATGGTGATAAACTACCCACTAATTAGAAACCCTAATAATTCCTCCCTTGAACTGAATGCTCCAAGCACTCAGGCCCTTCGCAGCTTCAAGAAAACATCCGACTTCAAAGGCTTAGTCACCATGCCGGCCAACTGTTCTTGTCCGTCCAAACGTTTAAGATTCCTTTGTATCAGCTCTGATTCTTCGGAAGTTTGATTCGGGAGCTACTATCATAATGAATAATATCACTAGGGTGCTCCACAAAAGCATCTTGATTCAACTCAGCATATAAAATTTAAATTACCATCTAACCGGTAGATAGCCCATCCTCCATGAGCTACAGGTGCTAACCCACCATATGCCACCACTGAACGTATCCCTTTGCTAAAAGCTTAGCCTTGTATTTGTCGACTTCTCCATTTCCATTTAATTTAGTATTATGAACCCATTTCAATTTTATTTTATTTCCTCCAGGTAAATCTGTTAATTTCCAAGTGCCATTTCTTCCAATGGCTTCGGTATCAACATTCATGGCCCTTCTTCATTTTTAACTCTTCGCAGCCTCTTTGAAGTGAACGGGATCAACAATAGTAAAAATGGCATTACGAGACCACTATCTTTTTCAAATTTCAGTATCTCATCCAAATTGCTAGTCTTCTATATCTTCGTTTGTTGCATCTAGGAGACAATTCTTTGGTCAAAGATTCGGGGCAAATTCATTTTCTTCTCATCAGCATCTAAACTAGATTCACTCTCCTCTACATTCTCATCAAACACAACCATTTCCCCCTCATGATTATCCCATTCAAAATCACACACAATGGCTTCTTCAGACTTCCAATTGTGAGTGTTATCTTCTTCAGATACAACAGATCTGCTTTTGGGAATCACTTGTAAAATTGGATCATAAAGTCCATATATAAGCCTTTGGCTTATTACTAAATCCAAGCAACACAACTCAAGCTTTTATCATCCAGCTTAGTTCTTTTACTGCCCGGTGCACGAACATGAGACGCAGTGAAGTACTCAACCAAAGGCTCAACACTTCGAGCTGGAGATCTATTTTTCACTGTCGAGCTTTAGGTTTCCACTGTAAACGGCCCAATTTTCTGGTTCAGAAAATTCTGGGCATTTTTTAAAGCATACCAATATCCATAATGGTTTTTATTTTTAAAGCATGCTAATATTTATCATGGTGGTTATATTGTTATGTTATGCAATTACATTTTACTATCCTGTTTATGCAACCATCAGTTGTATGGTTTTTGCATCCCAAAATCTGGTGAACTCTTGTGGTATGAATATAAACTCTCCTCAATCAGCACATAGGACCTGGACTAATAGAAACAGGTTTGATATGTCCACATGTTAGAGTGTACTTGTAGAAGGATATGCGAAGCTCTCTAGCTGCTCCTTAATGGCAAGGATTCCCTTTGTTCGTTGCCTAATAAGTAAGCACTGGATTACTTTGAAGAAGACGTAAGCTAGGGTCTAGCTTTCTAAGTTGAAGATTCATTAAGCCCTTAAAGCTCAACGATCCATATCTTCGATGCTAAAGTTGCACCATATTTTCACAAATAGATATTATAGGTTGAGATATAACTTTGAGCATGAACATTTACATTCCTTTCAAGGACATTTTCATCACCGCTATTAAACTTCTTTCCAGATGGAAACACCCTGCACTTTTCATTTTGAATTAAAATATCAAGCCTTTTTTCTAGCACTAGTCCGATTGGTCCCTTTCCCCTTCTATTTGCAGCTTGTGTAATTTGAATGAGGATCCGTTGGATCATGTCTTATTACGTTGCTCTTTGGCCCAGAAGGCTTGGTCCTATGTCCTTGCGGGAAATAGGATTTTCTATTTGTCTCAACCACAAAATCAATGATTTGATAACAAAAAATTTTGGAGGCATGATTCTTAGAGGAAAGGATTATATTCTTTGGAATTGTGCGGCCCATGCCCTTTTGTGGTTGATTTGGAAAGAAACGAATAGTAGGCTCTTTGAAGGGAAAACAACCTTGGTGAATTCTTTTTGTGATAGTTTACGTCACACTTCTTTGAGGGATGCATAAACCACAAGAAATTCTTTTGCAATTATAGTATAGCCTCATTATGATTATAAGTGATTGGAAGACTCTTATTACTGTGTGCCTGGGAGAGGGTGACCTCCACCCTTTGCCCTTTCTTCCTCTTGTGATTAATACATCTCCATTTTTTATTAGGAAAAAAAAAGGATTGTTTAAAGAAATAGGTCTCTGGTAGGAATGACCTTTGGGGTAATTAGGGATATTATTAGGGTATTGAGGGAGATGTGGACAAAGATAACTGCTCCAAATTAGATAATGACAAGAATGATAAATTTTGTAAGAAGAAGATTAGAGTATTAAGGGTACGTACCTTAGTAATTAGATAGGGAAGTAGAGTTGTTATAAATGGAGTGAGGGTGTAAGAATGAAGGTATGCTGTGGTCTAGGCTTGAGTGATATCAGCCTCTATAAGGGGAGGGTCCAAGTACTTCTAATACTTGGGTTATAGTGTAGTTCTTCTATCTTTTATATTTCAATACATTGTTAGTTGTTCGGATCCTATTAGCACCCAAACTTCCTAGCATTGAAAGAAAGAAATGGATTAAAAAAAAAAGTAGAACGCTTTGCGGCAAATACCTTTGCTGTAACCTTGTCGAGAATTGTCTCCTAAATTGAAGAATCTAATGCGATAGACAGTTCTTGGCTTTCAAATTTTTTAGCTTCTAACTGTAAATGTTCTTCCTTTACGCCCATGTGAGAACATCTTCTTCTGCTGTAGCTATCCTAGTTTCCACTAGGCCTCTGTACACCTCTGAATGTAAGGAGTTTTTCATGAAGATCACAGTGCCCATCAAATTTTACTGGTTGCACAAACGAAATCTCTGTCACGGTACCACAGACAAGACGGGCATTAAAAGACGGCTGCTTCTAAATTTAACCAGGCCCCAATCCCCATGATGGATCTTTGACACCAAATATTAGGAATAAGATCTTCAACGGAATAAAGTGAGAGAAAAAGACTCTTACAAGCACGATGAGAAAGACAACTTACCCCATCTAACAAAGTTTAGATTGGTGGTCATCATACTTAAGCTACCTACTACATGCAGATAAAGGAACTACCTTCTGACACTTGTAAACAAACTAACCTTAATAATAGAAATTCATTTACTGCAGGATGACAAGGCTACCCACAAACTACAAATCCTAACACATCTTTCTAGAAATGTTCAGAATTTCAGCCACCCAATTTTTCTCATCGAGTTGTTTACTTAAGCTACCTACTACGTGCATATAAAGGAACTACCTTCTGACACTTGTAAACAAACTAACCTTAATAATAGAAATTCATTTACTGCAGGATGACAAGGCCACCCACAAACTACAAATCCTAGCACCTCTTTCTAGAAATGTTCAGAATTTCAGCTACCCAATTTTTCTCATCGAGTTGTTTACTTAAGCTACCTACTACATGCATATAAAGGAACTACCTTCTGACACTTGTAAACAAACTAACCTTAATAATAGAAATTCATTTACTTCATGATGATAAAGCCGCCTACAAACTACAAATCCTAACACCTCTTTCTAGGAACGTTCAGGATTTCAGCTACCCAATTTTTCTGATCGAGTTGTTTCAAGTGTTGAACCTTGAGTGGACTTTTTGTTTTTTAAATTGTGCATAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTTCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTATCAGTTCGAGGTGGAGAGTTTGGGAAGGGTCCGAGGATTAGAAGATGCGAGGTATTATATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAATCCTCATTATTTTTTAAACATGTTTTTGTTTGTATAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTGCGTGGAGAGGAAGATGCTGAGACTGTCTATGCGAGCATTGATTTGGTATCTTCTATCATACAAAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTTGTTGAAGATGAGGAAGAGGAAGAGGAAGTTTCTCTGGAAGATAGTGGAGAAGTTATTGATGAGGTTATTTCTTGAACCTTTGGGCTTTTTTACTTTGAGTTCATTTTGCTGCATAAAATTTGATCATTTAGGTAGATATTTGCCTATAAAAGGTCATGTATTCCATGCCTATTAATTATTTGGTTAAAAAACATTTTTGGCCCCTCTATTTTCATTAAAGTAATGATTTAGTCCTTGAAATTGGGTTTTAACAATTTATTATCCGTATTTTTTAATTTGTAATAATTTAGTCATGAACTTTGGTATGTAACAGTTTAGTCCTTATACTTTTAAATTTCTAACAATTTAGCCATTATCGTGAAAAATGTTGTTAAAATTTAATGGGGTTTTTTTATATATATAGATCAATAGATTGACGAAGGATCAAATGATTTATAAACTACGAAGACTAAATTATTACATCATGAAAATTGATATTGAATTTTGATGATATTTTCCACGGCTAAAGAGACTAGGTTATAAATTTTAAACTATAGGGACTAAATTATTACCAATCTTAAAATATAGGACTAAATCATTACAAATTCAAAGTTAGGGATTAAATTCATTACTTCAATAAAAGTACAAGGAGTAATTAGTCATAATTGGGGTCTCTTGGTTATACTGGCTCTGAGGTCTCAAGTTTGAACCTTCTGGTTAGCTTAATACCAAAAATCCTTGATGTCTCTCGGGTTCCGGCCTTGGAGTGGGTGCGGCTATCTTGGGGTATAGGAGAACAAAGCTCCGACTCCTAGTAATTAAAAAAAAAATAAAGTAAAACCAAAAGTATTTTTTAACATAATTATTTTGGATATGTAAAAGCCAATTATATGTGTCAGAATTGCTAAATTGCAGCATACTCCCCGAGTTATTAGTAAGTTCATTTGTTTAGAGTTTATTTTTCTTGCTTCTTTCCAGTGATTAGTCAGGGGGAAATACTAGATGCATGCTCAGAATTAATGCCTGTTAGTTGATCCATATACAATAAGTTACTCTGTGGAGGGAAGAACAGAAAGCAGTGCATTCTCAATTTTGTTTTCACCCTATGACGTGCGTTTTGATTGGAATGCTTTTGGATAATTAGAGATATTAATGGAATAGCAAGGGTACATTAGCAATTAGTTAAAAAAATTGGTTAGTAGGAATTTAATGTAAATTGAGTGAGAGGAAGGGATGAAGGTAGGAAATTGTTCAATATGGTTTAGACTTGAGTAAGAATAGTCAAGAGAGGGGAGGGTTCAAGTACCTCAAATTACTTGAGAGTTATTATGTTCCTTCTATATAGTTTGGGTTCTATCAACTTTTTTATCTGACATTGTATGCAAACCTATCATACTTTTATTTGTACCATAGGAGTAATTAGTCAGATCTTTTTTCTTCACGGAATGATATTTGAGATGAACGTAAAAGTCAAAGAATTGGAAGTCGGATCACACAGCTGTTATATCTCCATGGTTTATAGGTGCCTGTTACTTGTATTTCTTGCTGAGTAATTAACATTCTGCTCAACTGTTATTGATTAACTTTTTACTGTTGGATAGAAGGCCTTCATTGTTTACAGGGGCCCGTTACATTAGACTTCCCTTTCTACTTAATTCTTTCAACCTGCTTAGAGTCAACGAGTTGGTTCTTCATAGTAACTGGGAATCCCTCTGAAGTTTTTACTGATCCTTTGCTCTTAATGGGTGTTTTGCGGCCATTCAAATGTATTTGATCGTTACAGCTTTTGATTCACTTGCTTATTTTGTTGACGTTTAATTTTGGTTGCAAGAAGCTCCTCTGCATGCCTTGTTGATCTTTGTCCTTTTTAGTTTATTAGAGCATTTATTCGTTTAAATATTGAGTTTTTTACTCATTTTTAACTTGATTTCAGATCGTTCGGACAAAATACTTTGATATGCCTCCTTTGACTGTTGAAGAAGCAATCGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAACGAAGAAACTGGTATGTTGATTAACATAATAGTCTTTTTTTTTGTTGGGAATCTGTGCTATTTATATCTGGGAGCTTATTGTCTTCATCTTTGCCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAGCCTGTGACAGTTGAGCCAGCCAGAGAACCTTCCTTGGCGGAATGA

mRNA sequence

ATGCAAAGTTGGAGCATAATTAGTTTAATAAGGATATGGGAAGGAAAAAGAAATGGTGGAGTGGCGTCCACAAAAACTCTATTTAATCTTTTATCCATTTGTTTTCAAAGCCAAAATCCCATCACTTTCTTTCTTCGATTTCCAAGTTTTCAAACAATGGCTACTCTCACCTCTTCCATGCACACTAATCTCCTTTCCGCTCCTTCTTCTTCTTCTACCTTTTCCACTTTCCCCGCTTCATTCTCTCTTCTCACTTCTACCAACTCCTCTGCCCTCAAAATCCACCCTCTTTCTTCCCATACTTCACCTTTCTTCAACTCCTGCAACTGCTTCACAACCATTCAGATTGCTCCCCGGAACCGCCATGCCGCAAACTCTTTCACTATTCGCATGTCCTGGGATGGCCCCCTCTCCTCTGTTAAATTAATTGTCCAAGGCAAGAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTTCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTATCAGTTCGAGGTGGAGAGTTTGGGAAGGGTCCGAGGATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTGCGTGGAGAGGAAGATGCTGAGACTGTCTATGCGAGCATTGATTTGGTATCTTCTATCATACAAAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTTGTTGAAGATGAGGAAGAGGAAGAGGAAGTTTCTCTGGAAGATAGTGGAGAAGTTATTGATGAGATCGTTCGGACAAAATACTTTGATATGCCTCCTTTGACTGTTGAAGAAGCAATCGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAACGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAGCCTGTGACAGTTGAGCCAGCCAGAGAACCTTCCTTGGCGGAATGA

Coding sequence (CDS)

ATGCAAAGTTGGAGCATAATTAGTTTAATAAGGATATGGGAAGGAAAAAGAAATGGTGGAGTGGCGTCCACAAAAACTCTATTTAATCTTTTATCCATTTGTTTTCAAAGCCAAAATCCCATCACTTTCTTTCTTCGATTTCCAAGTTTTCAAACAATGGCTACTCTCACCTCTTCCATGCACACTAATCTCCTTTCCGCTCCTTCTTCTTCTTCTACCTTTTCCACTTTCCCCGCTTCATTCTCTCTTCTCACTTCTACCAACTCCTCTGCCCTCAAAATCCACCCTCTTTCTTCCCATACTTCACCTTTCTTCAACTCCTGCAACTGCTTCACAACCATTCAGATTGCTCCCCGGAACCGCCATGCCGCAAACTCTTTCACTATTCGCATGTCCTGGGATGGCCCCCTCTCCTCTGTTAAATTAATTGTCCAAGGCAAGAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTTCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTATCAGTTCGAGGTGGAGAGTTTGGGAAGGGTCCGAGGATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTGCGTGGAGAGGAAGATGCTGAGACTGTCTATGCGAGCATTGATTTGGTATCTTCTATCATACAAAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTTGTTGAAGATGAGGAAGAGGAAGAGGAAGTTTCTCTGGAAGATAGTGGAGAAGTTATTGATGAGATCGTTCGGACAAAATACTTTGATATGCCTCCTTTGACTGTTGAAGAAGCAATCGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAACGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAGCCTGTGACAGTTGAGCCAGCCAGAGAACCTTCCTTGGCGGAATGA

Protein sequence

MQSWSIISLIRIWEGKRNGGVASTKTLFNLLSICFQSQNPITFFLRFPSFQTMATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTVEPAREPSLAE

Homology

[Close]

BLAST of Moc10g00200.1 vs. NCBI nr
Match: XP_022141073.1 (ribosome-binding factor PSRP1, chloroplastic [Momordica charantia])

HSP 1 Score: 597.0 bits (1538), Expect = 1.1e-166
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFT 112
           MATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFT
Sbjct: 1   MATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFT 60

Query: 113 TIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSH 172
           TIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSH
Sbjct: 61  TIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSH 120

Query: 173 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRK 232
           LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRK
Sbjct: 121 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRK 180

Query: 233 LRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDM 292
           LRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDM
Sbjct: 181 LRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDM 240

Query: 293 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTV 352
           PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTV
Sbjct: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTV 300

Query: 353 EPAREPSLAE 363
           EPAREPSLAE
Sbjct: 301 EPAREPSLAE 310

[Close]

BLAST of Moc10g00200.1 vs. NCBI nr
Match: XP_023551717.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 510.8 bits (1314), Expect = 9.9e-141
Identity = 276/317 (87.07%), Postives = 283/317 (89.27%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSA------PSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFN 112
           MA LTSSM TNLLSA       SSS+T STFP SFSL TSTNS+ LKIH LSSH S FFN
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSTTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFN 60

Query: 113 SCN-CFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGK 172
           SCN CF TI IAPR RHA  SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGK
Sbjct: 61  SCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGK 120

Query: 173 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLV 232
           AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLV
Sbjct: 121 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 180

Query: 233 SSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIV 292
           SSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIVVED  EEEEVS ED GE IDEIV
Sbjct: 181 SSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDEIV 240

Query: 293 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAE 352
           RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G AE
Sbjct: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300

Query: 353 KLEPVTVEPAREPSLAE 363
           K+E VTVE ARE SLAE
Sbjct: 301 KIETVTVEVAREASLAE 315

[Close]

BLAST of Moc10g00200.1 vs. NCBI nr
Match: XP_022922607.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 508.8 bits (1309), Expect = 3.8e-140
Identity = 275/319 (86.21%), Postives = 282/319 (88.40%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSA--------PSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPF 112
           MA LTSSM TNLLSA         SSSST STFP SFSL TSTNS+ LK H LSSH S F
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60

Query: 113 FNSCN-CFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 172
           FNSCN CF TI +APR RHA  SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
Sbjct: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120

Query: 173 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASID 232
           GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180

Query: 233 LVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDE 292
           LVSSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIVVED  EEEEVS ED GE IDE
Sbjct: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDE 240

Query: 293 IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGR 352
           IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G 
Sbjct: 241 IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGN 300

Query: 353 AEKLEPVTVEPAREPSLAE 363
           AEK+E VTVE ARE SLAE
Sbjct: 301 AEKIETVTVEVAREASLAE 317

[Close]

BLAST of Moc10g00200.1 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.1 bits (1302), Expect = 2.4e-139
Identity = 274/323 (84.83%), Postives = 282/323 (87.31%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSA------------PSSSSTFSTFPASFSLLTSTNSSALKIHPLSSH 112
           MA LTSSM TNLLSA             SSSST STFP SFSL TSTNS+ LK H LSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSH 60

Query: 113 TSPFFNSCN-CFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 172
            S FFNSCN CF TI +APR RHA  SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 173 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVY 232
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 233 ASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGE 292
           ASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDR K+R+PAPIVVED  EEEEVS ED GE
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVED--EEEEVSQEDGGE 240

Query: 293 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 352
            IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Sbjct: 241 AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 300

Query: 353 ENGRAEKLEPVTVEPAREPSLAE 363
           E+G AEK+E VTVE ARE SLAE
Sbjct: 301 EDGNAEKIETVTVEVAREASLAE 321

[Close]

BLAST of Moc10g00200.1 vs. NCBI nr
Match: XP_022984371.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 501.5 bits (1290), Expect = 6.0e-138
Identity = 266/298 (89.26%), Postives = 272/298 (91.28%), Query Frame = 0


Query: 66  SAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCN-CFTTIQIAPRNRHAA 125
           S+ SSSST STFP SFSL TSTNS+ LKIH LSSH S FFNSCN CF TI IAPR RHA 
Sbjct: 28  SSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRKRHAT 87

Query: 126 NSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVR 185
            SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVR
Sbjct: 88  RSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVR 147

Query: 186 GGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRG 245
           GGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSI+QRKLRKIKEKDSD G
Sbjct: 148 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHG 207

Query: 246 RHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQL 305
           RHMKGFDR K+REPAPIVVED  EEEEVS ED GE IDEIVRTKYFDMPPLTVEEAIEQL
Sbjct: 208 RHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQL 267

Query: 306 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTVEPAREPSLAE 363
           KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK+E VTVE ARE SLAE
Sbjct: 268 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Moc10g00200.1 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 337.8 bits (865), Expect = 1.5e-91
Identity = 184/318 (57.86%), Postives = 233/318 (73.27%), Query Frame = 0


Query: 52  TMATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCF 111
           T+ T   +M+ NL ++ S+S   S+ P + S L ST                F NSC+  
Sbjct: 3   TLCTSAINMNPNLTNSLSNSINLSSTPTNLSSLRST----------------FTNSCSLG 62

Query: 112 TTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHS 171
             + +            + MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+V KHS
Sbjct: 63  LNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHS 122

Query: 172 HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQR 231
           HLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+R EEDAE++Y+SIDLVSSIIQR
Sbjct: 123 HLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQR 182

Query: 232 KLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEE-------VSLEDSGEVIDEI 291
           KLRKIK+K SD GRHMKGF+R KVR+P P+ +  EE  EE       VS+ED  + I+E+
Sbjct: 183 KLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDD-DFIEEV 242

Query: 292 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRA 351
           VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK+ G+ 
Sbjct: 243 VRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPKD-GKT 302

Query: 352 EKLEPVTVEPAREPSLAE 363
           EKLE + V+  ++PS AE
Sbjct: 303 EKLESLPVQTDKQPSFAE 302

[Close]

BLAST of Moc10g00200.1 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-34
Identity = 88/204 (43.14%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 140 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 199
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 200 CEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVR 259
            EVT++     V+R +E +E +YASIDLV+  I R+LRK KE+  D     K    +K  
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTS 120

Query: 260 EPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 319
           E    +VED+  EE +  + + E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 E----IVEDKPVEENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 320 EETGEINILYKRKDGGYGLIIPKE 341
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

[Close]

BLAST of Moc10g00200.1 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-31
Identity = 79/200 (39.50%), Postives = 123/200 (61.50%), Query Frame = 0


Query: 140 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 199
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 200 TLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPA 259
           T++     V+R +E +E +YASIDLVS  I R+LRK KEK+  +  H        V+E  
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQEKT 120

Query: 260 PIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 319
             V+ ++   + +  + + E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T
Sbjct: 121 SEVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDT 180

Query: 320 GEINILYKRKDGGYGLIIPK 340
             IN++Y R  GGYG+I P+
Sbjct: 181 NAINVIYIRNHGGYGVIQPR 189

[Close]

BLAST of Moc10g00200.1 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-20
Identity = 64/194 (32.99%), Postives = 113/194 (58.25%), Query Frame = 0


Query: 144 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 203
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 204 KKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRE-PAPIV 263
              G++R EE    +YA+ID  S +++R+LRK K       R+MK     +    P P  
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMKQRQEGRPEPLPGPAE 125

Query: 264 VEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEI 323
            E   +    +++D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+ 
Sbjct: 126 AEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQT 185

Query: 324 NILYKRKDGGYGLI 337
            ++Y+R+DG YGLI
Sbjct: 186 GVVYRRRDGHYGLI 188

[Close]

BLAST of Moc10g00200.1 vs. ExPASy Swiss-Prot
Match: Q49VV1 (Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=hpf PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-19
Identity = 65/200 (32.50%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 140 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 199
           ++  + G+NL +T+A++ ++EEK+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQ----NSATKIEV 61

Query: 200 TLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRH---MKGFDRLKVR 259
           T+  KK   +R EE  + +YA IDL+++ ++R++RK K + + R R+    + F  L   
Sbjct: 62  TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 121

Query: 260 EPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 319
           + A  +  DE E +        E+  EI+R K F + P+  EEA+ Q+  + HDF+ F +
Sbjct: 122 KEAVEIQNDENEAD-------NEI--EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTD 181

Query: 320 EETGEINILYKRKDGGYGLI 337
            ET   +I+YKRKDG YGLI
Sbjct: 182 RETDGTSIVYKRKDGKYGLI 186

[Close]

BLAST of Moc10g00200.1 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 5.1e-167
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFT 112
           MATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFT
Sbjct: 1   MATLTSSMHTNLLSAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCNCFT 60

Query: 113 TIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSH 172
           TIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSH
Sbjct: 61  TIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSH 120

Query: 173 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRK 232
           LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRK
Sbjct: 121 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRK 180

Query: 233 LRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDM 292
           LRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDM
Sbjct: 181 LRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDM 240

Query: 293 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTV 352
           PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTV
Sbjct: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTV 300

Query: 353 EPAREPSLAE 363
           EPAREPSLAE
Sbjct: 301 EPAREPSLAE 310

[Close]

BLAST of Moc10g00200.1 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.8e-140
Identity = 275/319 (86.21%), Postives = 282/319 (88.40%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSA--------PSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPF 112
           MA LTSSM TNLLSA         SSSST STFP SFSL TSTNS+ LK H LSSH S F
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60

Query: 113 FNSCN-CFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 172
           FNSCN CF TI +APR RHA  SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
Sbjct: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120

Query: 173 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASID 232
           GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180

Query: 233 LVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDE 292
           LVSSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIVVED  EEEEVS ED GE IDE
Sbjct: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDE 240

Query: 293 IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGR 352
           IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G 
Sbjct: 241 IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGN 300

Query: 353 AEKLEPVTVEPAREPSLAE 363
           AEK+E VTVE ARE SLAE
Sbjct: 301 AEKIETVTVEVAREASLAE 317

[Close]

BLAST of Moc10g00200.1 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.9e-138
Identity = 266/298 (89.26%), Postives = 272/298 (91.28%), Query Frame = 0


Query: 66  SAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSCN-CFTTIQIAPRNRHAA 125
           S+ SSSST STFP SFSL TSTNS+ LKIH LSSH S FFNSCN CF TI IAPR RHA 
Sbjct: 28  SSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRKRHAT 87

Query: 126 NSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVR 185
            SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVR
Sbjct: 88  RSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVR 147

Query: 186 GGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRG 245
           GGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSI+QRKLRKIKEKDSD G
Sbjct: 148 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHG 207

Query: 246 RHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQL 305
           RHMKGFDR K+REPAPIVVED  EEEEVS ED GE IDEIVRTKYFDMPPLTVEEAIEQL
Sbjct: 208 RHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQL 267

Query: 306 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTVEPAREPSLAE 363
           KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK+E VTVE ARE SLAE
Sbjct: 268 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Moc10g00200.1 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.8e-135
Identity = 270/316 (85.44%), Postives = 279/316 (88.29%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSAPS------SSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFN 112
           MATLTSSM  NLLS  S      SSST S FPA FSL    + SALK+H LSS+ S FFN
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSL----HFSALKVHALSSNASAFFN 60

Query: 113 SCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKA 172
           SC  F TI+ A RNRHA+NSF+IRM+WDG LSSVKLIVQGKNLELTEAVKKHVEEKVGKA
Sbjct: 61  SCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKA 120

Query: 173 VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVS 232
           VQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVR EEDAETV+ASIDLVS
Sbjct: 121 VQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVS 180

Query: 233 SIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVR 292
           SIIQRKLRKIKEKDSDRGRH+KGFDR KVREPAPIVVED  EEEEV  ED GEVIDEIVR
Sbjct: 181 SIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVED--EEEEVFQEDGGEVIDEIVR 240

Query: 293 TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEK 352
           TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK
Sbjct: 241 TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAEK 300

Query: 353 LEPVTVEPAREPSLAE 363
           LEPVTVE AREPSLAE
Sbjct: 301 LEPVTVEAAREPSLAE 310

[Close]

BLAST of Moc10g00200.1 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.8e-135
Identity = 270/316 (85.44%), Postives = 279/316 (88.29%), Query Frame = 0


Query: 53  MATLTSSMHTNLLSAPS------SSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFN 112
           MATLTSSM  NLLS  S      SSST S FPA FSL    + SALK+H LSS+ S FFN
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSL----HFSALKVHALSSNASAFFN 60

Query: 113 SCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKA 172
           SC  F TI+ A RNRHA+NSF+IRM+WDG LSSVKLIVQGKNLELTEAVKKHVEEKVGKA
Sbjct: 61  SCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKA 120

Query: 173 VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVS 232
           VQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVR EEDAETV+ASIDLVS
Sbjct: 121 VQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVS 180

Query: 233 SIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVR 292
           SIIQRKLRKIKEKDSDRGRH+KGFDR KVREPAPIVVED  EEEEV  ED GEVIDEIVR
Sbjct: 181 SIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVED--EEEEVFQEDGGEVIDEIVR 240

Query: 293 TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEK 352
           TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK
Sbjct: 241 TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAEK 300

Query: 353 LEPVTVEPAREPSLAE 363
           LEPVTVE AREPSLAE
Sbjct: 301 LEPVTVEAAREPSLAE 310

[Close]

BLAST of Moc10g00200.1 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 359.8 bits (922), Expect = 2.6e-99
Identity = 183/248 (73.79%), Postives = 214/248 (86.29%), Query Frame = 0


Query: 119 RNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 178
           R+ +  +S  ++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 179 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKE 238
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 239 KDSDRGRHMKGFDRLKVREPA-PIVVEDEEEEEEVSL---EDSGEVIDEIVRTKYFDMPP 298
           KDSD GRHMKGF+RLKVREP    VVED E+  + S+   E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 299 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLEPVTVEP 358
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK++G+AEK+EP+  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 359 AREPSLAE 363
             E S AE
Sbjct: 301 LNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of Moc10g00200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141073.1	1.1e-166	100.00	ribosome-binding factor PSRP1, chloroplastic [Momordica charantia]	[more]
XP_023551717.1	9.9e-141	87.07	ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022922607.1	3.8e-140	86.21	ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]	[more]
KAG7014676.1	2.4e-139	84.83	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022984371.1	6.0e-138	89.26	ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Moc10g00200.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	1.5e-91	57.86	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	1.7e-34	43.14	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	3.0e-31	39.50	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	5.3e-20	32.99	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q49VV1	2.6e-19	32.50	Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. sap...	[more]

BLAST of Moc10g00200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJG5	5.1e-167	100.00	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1E3S3	1.8e-140	86.21	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J523	2.9e-138	89.26	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5D3BQR1	1.8e-135	85.44	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	1.8e-135	85.44	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Moc10g00200.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	2.6e-99	73.79	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 282..335 e-value: 5.6E-26 score: 90.0
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 143..239 e-value: 5.1E-22 score: 78.4
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 141..243 e-value: 3.2E-18 score: 64.1
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 141..239 e-value: 1.08101E-25 score: 97.2005
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 294..345 e-value: 2.8E-21 score: 76.8
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 141..251 e-value: 7.0E-21 score: 76.4
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 141..246
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 126..342
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 126..342
IPR034694	Ribosome hibernation promoting factor, long/plastid	HAMAP	MF_00839	HPF	coord: 140..339 score: 20.329395

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc10g00200	Moc10g00200	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc10g00200.1.exon1	Moc10g00200.1.exon1	exon
Moc10g00200.1.exon2	Moc10g00200.1.exon2	exon
Moc10g00200.1.exon3	Moc10g00200.1.exon3	exon
Moc10g00200.1.exon4	Moc10g00200.1.exon4	exon
Moc10g00200.1.exon5	Moc10g00200.1.exon5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc10g00200.1	cds.Moc10g00200.1	CDS
cds.Moc10g00200.1	cds.Moc10g00200.1_2	CDS
cds.Moc10g00200.1	cds.Moc10g00200.1_3	CDS
cds.Moc10g00200.1	cds.Moc10g00200.1_4	CDS
cds.Moc10g00200.1	cds.Moc10g00200.1_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc10g00200.1	Moc10g00200.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0045900	negative regulation of translational elongation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0043024	ribosomal small subunit binding
molecular_function	GO:0043022	ribosome binding