Moc09g18060.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g18060.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 14212695 .. 14214024 (-)
Sequence length	540
RNA-Seq Expression	Moc09g18060.1
Synteny	Moc09g18060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAATCAAGAGCAGGAGGTGAAGCCAACAACAAGTTCCTCCAATTCTGTGGAGAATGTAATGATAGAATACAGGGTGAAGAATAATGCCACACTCTAAAGCCAAGCAGTTTCTCTAAGAAATTTGGAAATCCAATTGGGACAAATGGCAAATGAGTTGAAAAATAGGTCCCTTGTTACTTTGTCTAATGACACCGAAAGTCCCAAGAGAGAGGGGAAGGAATAGTTAACCCTATAACTATAAGGTGTGACAAGGCTTTACCCCAACTACGAGCAGACTGCCATGTAAAGGAAACTGCAGAAAATGTGCTGGTTGATGATAACAGAGTGAACGATGCTAGAGCATCGCATGAGCAGATTTCAGAGTCAGAAATTCACATAGAGACAGAAGCTCAGTATGAACCTGAAATTAGCAGAGGAAAAAGAGCAGCAGAAGTAGAATTAGTGGAGGAAGCAGAACCAAGAGAAGCATCAGTCCAGAAAAGTGTGGAAACACCAGGGGAATATAGACCACCTCGCCCTATCCTTAAAGGCTTCAAAAGAGAAACCAAGATGATCAACTCAAGCATTTTTTGGATGTGTTGAAGCAACTCCACATCAATATACCCTTAGTTGAGGCTCTTGAGGAGATGTCTAACTATGCAAAAATTTTGAAGGATATCTTGACTAAGAAAAAGAGGTTTGGAGAGTTTGAAACCATAGCTTCAACCAAGGAGTGCAGTACAATTTTAACAGACAAGCTTCCACAAAAAATTTAGGATCTAGGGAGTTTCACTATTCCAATCTCTATTTGTGGAAAGAATGTGAGCCATGCTATATGCGATTTGGGTGTAAGCATAAACCTCGTGCCATTATTAGTATATCAGAGGTTGGGTATTGGTGAAGCAAGACTTACCATGGTGACACTATAGCTAGCTGACAGGTCAATCGCTCACCCAGAGGACAAGATCGAAGATGTGTTAGTACAAGTGGACAAGTTCATTTTCCCAGCTGACTTCATCATCAAGATCCCAATAATTTTGGGGATGCCTTTTCTATCCACCGGTAGAACGTTTATAGATGTGCATAATGGGGAGTTAACCATGAGAGTAAATGATCAACATATTACCTTTTCTATTTTTAATTCTGTTAAATTCCTTACTGGTGTAGAAGAATGTTCTCTCTTAAGGCTTGCAGATGACTTGTTGAGTAAGGAAATACAAAAGGAGACCTTGTTGGATCAATTGGAGAAAGAACTTACCATAGCCTATGAACATGTAGGGGACACTGTCGATGCTGGAGCATCTCAGCCCACGAGCGGCTCCAACGATGAAGAAGAAGAAGATTGA

mRNA sequence

ATGTCTAATCAAGAGCAGGAGGTGAAGCCAACAACAAGTTCCTCCAATTCTGTGGAGAATGTAATGATAGAATACAGGTCCCAAGAGAGAGGGGAAGGAATAGTTAACCCTATAACTATAAGGTGTGACAAGGCTTTACCCCAACTACGAGCAGACTGCCATGTAAAGGAAACTGCAGAAAATGTGCTGGTTGATGATAACAGAGTGAACGATGCTAGAGCATCGCATGAGCAGATTTCAGAGTCAGAAATTCACATAGAGACAGAAGCTCAGTATGAACCTGAAATTAGCAGAGGAAAAAGAGCAGCAGAAGTAGAATTAGTGGAGGAAGCAGAACCAAGAGAAGCATCAGTCCAGAAAAAAGAATGTTCTCTCTTAAGGCTTGCAGATGACTTGTTGAGTAAGGAAATACAAAAGGAGACCTTGTTGGATCAATTGGAGAAAGAACTTACCATAGCCTATGAACATGTAGGGGACACTGTCGATGCTGGAGCATCTCAGCCCACGAGCGGCTCCAACGATGAAGAAGAAGAAGATTGA

Coding sequence (CDS)

ATGTCTAATCAAGAGCAGGAGGTGAAGCCAACAACAAGTTCCTCCAATTCTGTGGAGAATGTAATGATAGAATACAGGTCCCAAGAGAGAGGGGAAGGAATAGTTAACCCTATAACTATAAGGTGTGACAAGGCTTTACCCCAACTACGAGCAGACTGCCATGTAAAGGAAACTGCAGAAAATGTGCTGGTTGATGATAACAGAGTGAACGATGCTAGAGCATCGCATGAGCAGATTTCAGAGTCAGAAATTCACATAGAGACAGAAGCTCAGTATGAACCTGAAATTAGCAGAGGAAAAAGAGCAGCAGAAGTAGAATTAGTGGAGGAAGCAGAACCAAGAGAAGCATCAGTCCAGAAAAAAGAATGTTCTCTCTTAAGGCTTGCAGATGACTTGTTGAGTAAGGAAATACAAAAGGAGACCTTGTTGGATCAATTGGAGAAAGAACTTACCATAGCCTATGAACATGTAGGGGACACTGTCGATGCTGGAGCATCTCAGCCCACGAGCGGCTCCAACGATGAAGAAGAAGAAGATTGA

Protein sequence

MSNQEQEVKPTTSSSNSVENVMIEYRSQERGEGIVNPITIRCDKALPQLRADCHVKETAENVLVDDNRVNDARASHEQISESEIHIETEAQYEPEISRGKRAAEVELVEEAEPREASVQKKECSLLRLADDLLSKEIQKETLLDQLEKELTIAYEHVGDTVDAGASQPTSGSNDEEEED

Homology

[Close]

BLAST of Moc09g18060.1 vs. NCBI nr
Match: XP_022159030.1 (uncharacterized protein LOC111025474 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 5.6e-04
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 77  EQISESEIHIETEAQYEPEISRGKRAAEVELVEEAEPREASVQK 121
           + ISESEI   TE Q+EPEISRGKRAAE + VEEAEPR A VQK
Sbjct: 65  QTISESEIXTGTETQHEPEISRGKRAAEAKSVEEAEPRGAPVQK 108

[Close]

BLAST of Moc09g18060.1 vs. ExPASy TrEMBL
Match: A0A6J1DXH8 (uncharacterized protein LOC111025474 OS=Momordica charantia OX=3673 GN=LOC111025474 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 77  EQISESEIHIETEAQYEPEISRGKRAAEVELVEEAEPREASVQK 121
           + ISESEI   TE Q+EPEISRGKRAAE + VEEAEPR A VQK
Sbjct: 65  QTISESEIXTGTETQHEPEISRGKRAAEAKSVEEAEPRGAPVQK 108

[Close]

BLAST of Moc09g18060.1 vs. ExPASy TrEMBL
Match: A0A6J1DWD1 (uncharacterized protein LOC111024103 OS=Momordica charantia OX=3673 GN=LOC111024103 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-04
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 61  NVLVDDNRVNDARASHE--QISESEIHIETEAQYEPEISRGKRAAEVELVEEAEPREASV 120
           N++ + N    +  SHE   ISESEIHIETE Q E EI +GKR AE E VE+AEP EA V
Sbjct: 43  NMVKNMNTAAASSTSHEINNISESEIHIETEVQAEIEIGKGKRVAEAESVEKAEPSEAPV 102

Query: 121 QKK-ECSLLRLADDLLSKEIQKETLLDQLEKELTI 153
           QK  E         L  + +QK    +QL+  L +
Sbjct: 103 QKSVETPREYRPPPLYPQRLQKTNQDNQLKHFLNV 137

The following BLAST results are available for this feature:

BLAST of Moc09g18060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159030.1	5.6e-04	72.73	uncharacterized protein LOC111025474 [Momordica charantia]	[more]

BLAST of Moc09g18060.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g18060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXH8	2.7e-04	72.73	uncharacterized protein LOC111025474 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DWD1	7.9e-04	45.26	uncharacterized protein LOC111024103 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc09g18060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 129..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc09g18060	Moc09g18060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc09g18060.1.exon3	Moc09g18060.1.exon3	exon
Moc09g18060.1.exon2	Moc09g18060.1.exon2	exon
Moc09g18060.1.exon1	Moc09g18060.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc09g18060.1	cds.Moc09g18060.1_3	CDS
cds.Moc09g18060.1	cds.Moc09g18060.1_2	CDS
cds.Moc09g18060.1	cds.Moc09g18060.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc09g18060.1	Moc09g18060.1-protein	polypeptide