Moc09g15800.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g15800.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Cytochrome c oxidase subunit 2
Location	chr9: 13119874 .. 13120660 (+)
Sequence length	573
RNA-Seq Expression	Moc09g15800.1
Synteny	Moc09g15800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGAGTATTCAGGGGCCAGTCAGTCAAGCGGTTCGGGTTCTCGGTAGGTTCCCGTTCGCCTGCCCCCTCATAGTCCATTAGTGGGTAGGGTGGTAAACTTAGAGGGCGCCCGCCTCCTCTTCAGACGTGTCCTCGACAACTTGGCGGTTGTTCGGTCTCCGCTTTTGGGGGCGGAAGTGCTTGGTCGCTGGGGTTTCCTTTTCTTTTCCTCAACCAAAACGAATTCGGTTGTGTCAGCCTGGTCTAACATTTGGTTATGAGCTGGCTAGACAAACAAAGATGGATTGAAGGTAAGATAGATTGGAGTGAAAGTGGCACAGGACCTTCGATCGACCATGGGGCGTATTCGACCCTTACCGAATTCATTCTATTGAAGCGTTACGTAAAAAGCTCCTTCTCATGCATCTTGCATTTCTTTGGTTTTTGGAAGTTCCAGAATGTTGTCTTTGGATTTCCAACAAAGGAAAGCCCCCTTTTCTTAATGAGAGTTCCGTGCTGCTCGCCACTCCCCGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTTCCATTATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTCCTTCCCCGCTCCCTCTTTTTCTACATATGCGGTGGCGGGCGGAGCACTCGTCATGACCGGCGGCGGGTTACCATAGAAGAGGGGACAACTTCTTTCTCCCTTGCCTTGCTCCATTTTCCTTTGATGATTGAAAGTAGCAAGCCACTCCACTACTAG

mRNA sequence

ATGAAATTGAGTATTCAGGGGCCAGTCAGTCAAGCGGTTCGGGTTCTCGGTAGCTGGCTAGACAAACAAAGATGGATTGAAGGTAAGATAGATTGGAGTGAAAGTGGCACAGGACCTTCGATCGACCATGGGGCGTATTCGACCCTTACCGAATTCATTCTATTGAAGCGTTACGTAAAAAGCTCCTTCTCATGCATCTTGCATTTCTTTGGTTTTTGGAAGTTCCAGAATGTTGTCTTTGGATTTCCAACAAAGGAAAGCCCCCTTTTCTTAATGAGAGTTCCGTGCTGCTCGCCACTCCCCGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTTCCATTATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTCCTTCCCCGCTCCCTCTTTTTCTACATATGCGGTGGCGGGCGGAGCACTCGTCATGACCGGCGGCGGGTTACCATAGAAGAGGGGACAACTTCTTTCTCCCTTGCCTTGCTCCATTTTCCTTTGATGATTGAAAGTAGCAAGCCACTCCACTACTAG

Coding sequence (CDS)

ATGAAATTGAGTATTCAGGGGCCAGTCAGTCAAGCGGTTCGGGTTCTCGGTAGCTGGCTAGACAAACAAAGATGGATTGAAGGTAAGATAGATTGGAGTGAAAGTGGCACAGGACCTTCGATCGACCATGGGGCGTATTCGACCCTTACCGAATTCATTCTATTGAAGCGTTACGTAAAAAGCTCCTTCTCATGCATCTTGCATTTCTTTGGTTTTTGGAAGTTCCAGAATGTTGTCTTTGGATTTCCAACAAAGGAAAGCCCCCTTTTCTTAATGAGAGTTCCGTGCTGCTCGCCACTCCCCGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTTCCATTATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTCCTTCCCCGCTCCCTCTTTTTCTACATATGCGGTGGCGGGCGGAGCACTCGTCATGACCGGCGGCGGGTTACCATAGAAGAGGGGACAACTTCTTTCTCCCTTGCCTTGCTCCATTTTCCTTTGATGATTGAAAGTAGCAAGCCACTCCACTACTAG

Protein sequence

MKLSIQGPVSQAVRVLGSWLDKQRWIEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGFPTKESPLFLMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGGGRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY

Homology

[Close]

BLAST of Moc09g15800.1 vs. NCBI nr
Match: YP_007516862.1 (hypothetical protein GlmaxMp13 [Glycine max] >AFR34339.1 hypothetical protein GlmaxMp13 [Glycine max])

HSP 1 Score: 255.4 bits (651), Expect = 3.9e-64
Identity = 132/172 (76.74%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 23  QRWIEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGF 82
           QRW+EGKIDWS SGTGPSIDHGAYSTLTEFILLKR VK     +LHFFG       ++  
Sbjct: 92  QRWMEGKIDWSSSGTGPSIDHGAYSTLTEFILLKRNVK---LLMLHFFGLEVPGCCLWIS 151

Query: 83  PTKESPLF----LMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLF 142
              + PLF    L++VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLF
Sbjct: 152 NKGKPPLFYLCHLIKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLF 211

Query: 143 FLPRSLFFYICGGGRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           FLPRSLFFYIC  GRST +DRRRVT EEGTTSFSLALLHFP +IES KPLHY
Sbjct: 212 FLPRSLFFYIC--GRSTLYDRRRVTREEGTTSFSLALLHFPFLIESRKPLHY 258

[Close]

BLAST of Moc09g15800.1 vs. NCBI nr
Match: RDY13467.1 (hypothetical protein CR513_01586, partial [Mucuna pruriens])

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-59
Identity = 125/168 (74.40%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 23  QRWIEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGF 82
           QRW+EG+IDWS SGTGPSIDHGAYSTLTEFILLKR VK     +LHFF            
Sbjct: 93  QRWMEGQIDWSSSGTGPSIDHGAYSTLTEFILLKRNVK---LLMLHFF------------ 152

Query: 83  PTKESPLFLMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPR 142
                      VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPR
Sbjct: 153 -----------VPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPR 212

Query: 143 SLFFYICGGGRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           SLFFYIC  GRST +DRRRVT EEGTTSFSLALLHF  +IES KPLHY
Sbjct: 213 SLFFYIC--GRSTLYDRRRVTREEGTTSFSLALLHFTFLIESRKPLHY 232

[Close]

BLAST of Moc09g15800.1 vs. NCBI nr
Match: QCD83512.1 (hypothetical protein DEO72_LG2g3857 [Vigna unguiculata])

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-48
Identity = 114/168 (67.86%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 26  IEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGFPTK 85
           +EGKIDWS SGTGPS         TEFILLKR VK     +LHFFG    +  ++     
Sbjct: 1   MEGKIDWSSSGTGPSTMGRILPLPTEFILLKRNVK---LLMLHFFGLEVPECCLWISNKG 60

Query: 86  ESPLF--LMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRS 145
           + PL   L++V C SPLP+AKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRS
Sbjct: 61  KPPLLCHLIKVLCYSPLPKAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRS 120

Query: 146 LFFYICGGGRSTRHDRRRVTIEEGTTSFSL-ALLHFPLMIESSKPLHY 191
           L FYIC  GRST +DRRRVT EEGTTSFSL ALLHF  +IES KPLHY
Sbjct: 121 LLFYIC--GRSTLYDRRRVTREEGTTSFSLAALLHFTFLIESRKPLHY 163

[Close]

BLAST of Moc09g15800.1 vs. NCBI nr
Match: YP_009526540.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54299.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 92  MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 151
           M VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 364 MEVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 423

Query: 152 GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           GRST +DRRRVT EEG TSFSLALLHFP +IESSKPLHY
Sbjct: 424 GRSTLYDRRRVTREEGITSFSLALLHFPFLIESSKPLHY 462

[Close]

BLAST of Moc09g15800.1 vs. NCBI nr
Match: AGC78983.1 (hypothetical protein [Vicia faba])

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-45
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 92  MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 151
           M+VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 1   MKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 60

Query: 152 GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           GRSTR+DRRRVT EEGTT  SLALLHFP +I SSKPLHY
Sbjct: 61  GRSTRYDRRRVTREEGTTYLSLALLHFPFLILSSKPLHY 99

[Close]

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL
Match: M1FIW5 (Uncharacterized protein OS=Glycine max OX=3847 GN=orf287 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 132/172 (76.74%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 23  QRWIEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGF 82
           QRW+EGKIDWS SGTGPSIDHGAYSTLTEFILLKR VK     +LHFFG       ++  
Sbjct: 92  QRWMEGKIDWSSSGTGPSIDHGAYSTLTEFILLKRNVK---LLMLHFFGLEVPGCCLWIS 151

Query: 83  PTKESPLF----LMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLF 142
              + PLF    L++VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLF
Sbjct: 152 NKGKPPLFYLCHLIKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLF 211

Query: 143 FLPRSLFFYICGGGRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           FLPRSLFFYIC  GRST +DRRRVT EEGTTSFSLALLHFP +IES KPLHY
Sbjct: 212 FLPRSLFFYIC--GRSTLYDRRRVTREEGTTSFSLALLHFPFLIESRKPLHY 258

[Close]

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL
Match: A0A371IEK0 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_01586 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.9e-60
Identity = 125/168 (74.40%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 23  QRWIEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGF 82
           QRW+EG+IDWS SGTGPSIDHGAYSTLTEFILLKR VK     +LHFF            
Sbjct: 93  QRWMEGQIDWSSSGTGPSIDHGAYSTLTEFILLKRNVK---LLMLHFF------------ 152

Query: 83  PTKESPLFLMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPR 142
                      VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPR
Sbjct: 153 -----------VPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPR 212

Query: 143 SLFFYICGGGRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           SLFFYIC  GRST +DRRRVT EEGTTSFSLALLHF  +IES KPLHY
Sbjct: 213 SLFFYIC--GRSTLYDRRRVTREEGTTSFSLALLHFTFLIESRKPLHY 232

[Close]

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL
Match: A0A4D6L4Q6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g3857 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.6e-49
Identity = 114/168 (67.86%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 26  IEGKIDWSESGTGPSIDHGAYSTLTEFILLKRYVKSSFSCILHFFGFWKFQNVVFGFPTK 85
           +EGKIDWS SGTGPS         TEFILLKR VK     +LHFFG    +  ++     
Sbjct: 1   MEGKIDWSSSGTGPSTMGRILPLPTEFILLKRNVK---LLMLHFFGLEVPECCLWISNKG 60

Query: 86  ESPLF--LMRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRS 145
           + PL   L++V C SPLP+AKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRS
Sbjct: 61  KPPLLCHLIKVLCYSPLPKAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRS 120

Query: 146 LFFYICGGGRSTRHDRRRVTIEEGTTSFSL-ALLHFPLMIESSKPLHY 191
           L FYIC  GRST +DRRRVT EEGTTSFSL ALLHF  +IES KPLHY
Sbjct: 121 LLFYIC--GRSTLYDRRRVTREEGTTSFSLAALLHFTFLIESRKPLHY 163

[Close]

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL
Match: A0A385G272 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp14 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.8e-46
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 92  MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 151
           M VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 364 MEVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 423

Query: 152 GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           GRST +DRRRVT EEG TSFSLALLHFP +IESSKPLHY
Sbjct: 424 GRSTLYDRRRVTREEGITSFSLALLHFPFLIESSKPLHY 462

[Close]

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL
Match: R4IV49 (Uncharacterized protein OS=Vicia faba OX=3906 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 92  MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 151
           M+VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 1   MKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 60

Query: 152 GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 191
           GRSTR+DRRRVT EEGTT  SLALLHFP +I SSKPLHY
Sbjct: 61  GRSTRYDRRRVTREEGTTYLSLALLHFPFLILSSKPLHY 99

The following BLAST results are available for this feature:

BLAST of Moc09g15800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_007516862.1	3.9e-64	76.74	hypothetical protein GlmaxMp13 [Glycine max] >AFR34339.1 hypothetical protein Gl...	[more]
RDY13467.1	1.0e-59	74.40	hypothetical protein CR513_01586, partial [Mucuna pruriens]	[more]
QCD83512.1	1.8e-48	67.86	hypothetical protein DEO72_LG2g3857 [Vigna unguiculata]	[more]
YP_009526540.1	1.4e-45	91.92	hypothetical protein [Ammopiptanthus mongolicus] >AXV54299.1 hypothetical protei...	[more]
AGC78983.1	5.3e-45	90.91	hypothetical protein [Vicia faba]	[more]

BLAST of Moc09g15800.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M1FIW5	1.9e-64	76.74	Uncharacterized protein OS=Glycine max OX=3847 GN=orf287 PE=4 SV=1	[more]
A0A371IEK0	4.9e-60	74.40	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_01586 P...	[more]
A0A4D6L4Q6	8.6e-49	67.86	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g3857 PE=4 SV=1	[more]
A0A385G272	6.8e-46	91.92	Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp14 PE=4 S...	[more]
R4IV49	2.6e-45	90.91	Uncharacterized protein OS=Vicia faba OX=3906 PE=4 SV=1	[more]

BLAST of Moc09g15800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc09g15800	Moc09g15800	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc09g15800.1.exon1	Moc09g15800.1.exon1	exon
Moc09g15800.1.exon2	Moc09g15800.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc09g15800.1	cds.Moc09g15800.1	CDS
cds.Moc09g15800.1	cds.Moc09g15800.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc09g15800.1	Moc09g15800.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004129	cytochrome-c oxidase activity