Moc09g15370.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g15370.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr9: 13005330 .. 13007016 (+)
Sequence length588
RNA-Seq ExpressionMoc09g15370.1
SyntenyMoc09g15370.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGGCCTCCCGATCCGAGAGGGACGCGACGCGAGATGATGATGGGTCAACCGCGACTGGCGCAGCTGGTGGAACTGCTGCTTTCGCTCGGTGAATAAGAATAAGTCCTCAAATTGTTCTTTGGATAAACGACTGGATTTTGATCTTCTACTTCATTCCTATCTGCTTCGTGGATTAAGCGGTGGTGGTGCCTCTCCCACTGCTTATTGGTGGGTTCGAATATGGCACAGGAGTTGCTGACTTCATTCAGGTGGACACTGCAATTAGGGCTCGATCGAATATCCAAGAGATGACTTGTATACCAACTGTACTGCAGCTAGCTCAAAAGCGGATGGATCAACAATGGTAACTCAAACAGGCTCCGAAGGAGTATAGCTTTGTTGGGGGTGAACTTACTGCTCCTGGCTTTCCTCATAGGGGTAGACAGGCATCTTTTTTGGTTCAAAGTCGAGGTAAACGACTGATTCTTAGTCAACTCGGTTAGCTTCCTCTGCTTCCGGTGGTGGGCCAACCACTGATGCGGACAGAGGCTAGGTAATGTCTCTCCAACTAGCTCTACCCTGGTCACAGGGTCAATAATAGGTCCGGTGGTTCTTCGACTTTTTGTTTTGGCATTAAAGAGTTGCAAATCTTCTTTTACGAGAGTAAAAAAAAAGAAAGAAGAGAAAACCGGCTGGCTTTGCCTTCAACAATAACAAAAAAGGAAATAAGGGGCTTTTTAAGACACTGACGGTTGTAAGATCAGACAAGTCCTCTTTCTCAAAATTTGAGATTTCCGTCTGCTGTTAGAAAGATGATACCTCTGCTACAATCAACTGGTGATCCTCCGGGTACTATACACATGAGTGAAAGATAGAGACCTACCTTGCTCAAAAGATCTGAAAATCCTTGTGCTGAAAACTCTTTTTGCTTACCGAAATAGGAACAAAAACGTCATGACAATAACGACTATGTGTAAATGGAAAGTTGGTTGTAAACCCTCTTTCAAAGCTGTGACGAAAGAAATTCTATAAGATGGGTGTGCATTCTCGGGATTCCCGTTTTTGGTGCCAAATTGGATCCCTTATCGTCTATGATAGGTCGATCCAAAAAGGACGAAATGAGTCGCAAAATAGATGGATCCTGGAAACTAGTTCCCAGTTTGGATAAGAGACGAGATTGAGAAATTCTAGTCGTCGGCCGCCGAGCGACAAGAACAAGCAGGAGTCGTCCTATCCGCCTAGAAAGATTCTCGAAGACTTTCTAATATTATCAAAATCAAGCCCCAGCCAACTTGACTTATTTAAAACCTCCAATCGGTATGAGATACCCGGAATGGGGGTACTGGCATAGACACCTTACTCCTCGCCTTTTAGTAAACCTTCTAATCGGAGAGGCCAGACGCCAAAGCAAAAGAACTTGTGGAGTTGGAATCAAACTAAAGGGATCCCGCTTAGTGACGTGGACAAACTGACCCCTTTGGGGAGGAAGGTTAACCCAATCGTCGAACCCCGGGGGGAATTCCTTCCATACAGGATTGGGGAAAGACCAAACTTGGCAATGGATCCAAGGGGAAGCCAACTCACTTATCGATCCCAGAGTGCGGTTAATCTGCTTATTCCAGTGAACAAAGAAACTCCATGGGTGGGGCCCAACAATCAAAAGAGGGCGGACTTGGTTCGCTACAGGACAAGGAAGGGCTAA

mRNA sequence

ATGCTTCGGCCTCCCGATCCGAGAGGGACGCGACGCGAGATGATGATGGGTCAACCGCGACTGGCGCAGCTGGTGGAACTGCTGCTTTCGCTCGCGGTGGTGGTGCCTCTCCCACTGCTTATTGGTGGGTTCGAATATGGCACAGGAGTTGCTGACTTCATTCAGGTGGACACTGCAATTAGGGCTCGATCGAATATCCAAGAGATGACTTGTATACCAACTGTACTGCAGCTAGCTCAAAAGCGGATGGATCAACAATGTAAACCTTCTAATCGGAGAGGCCAGACGCCAAAGCAAAAGAACTTGTGGAGTTGGAATCAAACTAAAGGGATCCCGCTTAGTGACGTGGACAAACTGACCCCTTTGGGGAGGAAGGTTAACCCAATCGTCGAACCCCGGGGGGAATTCCTTCCATACAGGATTGGGGAAAGACCAAACTTGGCAATGGATCCAAGGGGAAGCCAACTCACTTATCGATCCCAGAGTGCGGTTAATCTGCTTATTCCAGTGAACAAAGAAACTCCATGGGTGGGGCCCAACAATCAAAAGAGGGCGGACTTGGTTCGCTACAGGACAAGGAAGGGCTAA

Coding sequence (CDS)

ATGCTTCGGCCTCCCGATCCGAGAGGGACGCGACGCGAGATGATGATGGGTCAACCGCGACTGGCGCAGCTGGTGGAACTGCTGCTTTCGCTCGCGGTGGTGGTGCCTCTCCCACTGCTTATTGGTGGGTTCGAATATGGCACAGGAGTTGCTGACTTCATTCAGGTGGACACTGCAATTAGGGCTCGATCGAATATCCAAGAGATGACTTGTATACCAACTGTACTGCAGCTAGCTCAAAAGCGGATGGATCAACAATGTAAACCTTCTAATCGGAGAGGCCAGACGCCAAAGCAAAAGAACTTGTGGAGTTGGAATCAAACTAAAGGGATCCCGCTTAGTGACGTGGACAAACTGACCCCTTTGGGGAGGAAGGTTAACCCAATCGTCGAACCCCGGGGGGAATTCCTTCCATACAGGATTGGGGAAAGACCAAACTTGGCAATGGATCCAAGGGGAAGCCAACTCACTTATCGATCCCAGAGTGCGGTTAATCTGCTTATTCCAGTGAACAAAGAAACTCCATGGGTGGGGCCCAACAATCAAAAGAGGGCGGACTTGGTTCGCTACAGGACAAGGAAGGGCTAA

Protein sequence

MLRPPDPRGTRREMMMGQPRLAQLVELLLSLAVVVPLPLLIGGFEYGTGVADFIQVDTAIRARSNIQEMTCIPTVLQLAQKRMDQQCKPSNRRGQTPKQKNLWSWNQTKGIPLSDVDKLTPLGRKVNPIVEPRGEFLPYRIGERPNLAMDPRGSQLTYRSQSAVNLLIPVNKETPWVGPNNQKRADLVRYRTRKG
Homology
[Close]
BLAST of Moc09g15370.1 vs. NCBI nr
Match: KAF5199754.1 (hypothetical protein FRX31_010659 [Thalictrum thalictroides])

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-13
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 121 PLGRKVNPIVEPRGEFLPYRIGER---PNLAMDPRGSQLTYRSQSAVNLLIPVNKETPWV 180
           PLGRKVNPI+ P    LPYRIGER     LAMDPRGSQLTYRSQSAVNLLIPVNKE+  +
Sbjct: 15  PLGRKVNPILNP---VLPYRIGERLLAHYLAMDPRGSQLTYRSQSAVNLLIPVNKESNSM 73

[Close]
BLAST of Moc09g15370.1 vs. ExPASy TrEMBL
Match: A0A7J6WQU7 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_010659 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 121 PLGRKVNPIVEPRGEFLPYRIGER---PNLAMDPRGSQLTYRSQSAVNLLIPVNKETPWV 180
           PLGRKVNPI+ P    LPYRIGER     LAMDPRGSQLTYRSQSAVNLLIPVNKE+  +
Sbjct: 15  PLGRKVNPILNP---VLPYRIGERLLAHYLAMDPRGSQLTYRSQSAVNLLIPVNKESNSM 73

The following BLAST results are available for this feature:
BLAST of Moc09g15370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5199754.13.2e-1375.81hypothetical protein FRX31_010659 [Thalictrum thalictroides][more]
BLAST of Moc09g15370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g15370.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6WQU71.6e-1375.81Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_010659 PE=... [more]
BLAST of Moc09g15370.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..104

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc09g15370Moc09g15370gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc09g15370.1.exon1Moc09g15370.1.exon1exon
Moc09g15370.1.exon2Moc09g15370.1.exon2exon
Moc09g15370.1.exon3Moc09g15370.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc09g15370.1cds.Moc09g15370.1CDS
cds.Moc09g15370.1cds.Moc09g15370.1_2CDS
cds.Moc09g15370.1cds.Moc09g15370.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc09g15370.1Moc09g15370.1-proteinpolypeptide