Moc08g22240.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g22240.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Glutamate--cysteine ligase EgtA
Location	chr8: 16333806 .. 16334328 (-)
Sequence length	396
RNA-Seq Expression	Moc08g22240.1
Synteny	Moc08g22240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAAGTTAGCAAGAGAATAACGTAAATGTAGTCAACTTTCTTCGATCCCCTTACCTCTAAGGCTGGATCAATACTTATAGCGTGAAGTTGTTCCAGAATCTTCCGTAGCTAACCCTAATTCACCGTTGCAGGGCCTGGGCGACATCGTCGATCGAAGATGGGGGATCACTGGCTGGGCCGTGGGCCGAGCACGGCTCGAGACCGAGCCCCGGGTCGAGGCCGAGCACAGCTCAGGACCGAGCCCCGGGTCGGGACCGAGCACCGGGTCGGGACCGAGCACTGAGCCGGGACCGAGCACCGGGCCGAGACCGAGCACCGGGCCGGGACCGAGCCCTTCGTGGCTCAGTGGGCTTCCCTCCGGTCGCTTTCCTCGTTCTCTGCCCCGGCGTTAGGTCATTCTTTGGGCCGGCCCGTTATGTCACGGGCCGGTCTTCCCCAATCAGACTTCAACTCCTTGTCTCGTTTCGGGTCATTTTTGTTCTCCATAACAATGGCCCCCACTCTCAAAACAGAAGATGA

mRNA sequence

ATGCTTAAGGCCTGGGCGACATCGTCGATCGAAGATGGGGGATCACTGGCTGGGCCGTGGGCCGAGCACGGCTCGAGACCGAGCCCCGGGTCGAGGCCGAGCACAGCTCAGGACCGAGCCCCGGGTCGGGACCGAGCACCGGGTCGGGACCGAGCACTGAGCCGGGACCGAGCACCGGGCCGAGACCGAGCACCGGGCCGGGACCGAGCCCTTCGTGGCTCAGTGGGCTTCCCTCCGGTCGCTTTCCTCGTTCTCTGCCCCGGCGTTAGGTCATTCTTTGGGCCGGCCCGTTATGTCACGGGCCGGTCTTCCCCAATCAGACTTCAACTCCTTGTCTCGTTTCGGGTCATTTTTGTTCTCCATAACAATGGCCCCCACTCTCAAAACAGAAGATGA

Coding sequence (CDS)

ATGCTTAAGGCCTGGGCGACATCGTCGATCGAAGATGGGGGATCACTGGCTGGGCCGTGGGCCGAGCACGGCTCGAGACCGAGCCCCGGGTCGAGGCCGAGCACAGCTCAGGACCGAGCCCCGGGTCGGGACCGAGCACCGGGTCGGGACCGAGCACTGAGCCGGGACCGAGCACCGGGCCGAGACCGAGCACCGGGCCGGGACCGAGCCCTTCGTGGCTCAGTGGGCTTCCCTCCGGTCGCTTTCCTCGTTCTCTGCCCCGGCGTTAGGTCATTCTTTGGGCCGGCCCGTTATGTCACGGGCCGGTCTTCCCCAATCAGACTTCAACTCCTTGTCTCGTTTCGGGTCATTTTTGTTCTCCATAACAATGGCCCCCACTCTCAAAACAGAAGATGA

Protein sequence

MLKAWATSSIEDGGSLAGPWAEHGSRPSPGSRPSTAQDRAPGRDRAPGRDRALSRDRAPGRDRAPGRDRALRGSVGFPPVAFLVLCPGVRSFFGPARYVTGRSSPIRLQLLVSFRVIFVLHNNGPHSQNRR

Homology

[Close]

BLAST of Moc08g22240.1 vs. ExPASy TrEMBL
Match: A0A561VR60 (Glutamate--cysteine ligase EgtA OS=Actinoplanes teichomyceticus OX=1867 GN=egtA PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.9e-04
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 8   SSIEDGGSLAGPWAEHGS--RPSPGSRPSTAQDRAPGRDRAPGRDRALSRDRAPGRDRAP 67
           S+ +  G    P  E GS  R +PG  P+  +D APGRD APGRD A  RD APGRD AP
Sbjct: 431 SASDPPGRNLAPGRERGSGRRTAPGRDPAPGRDPAPGRDPAPGRDPAPGRDPAPGRDPAP 490

Query: 68  GRDRA 71
           GRD A
Sbjct: 491 GRDPA 495

The following BLAST results are available for this feature:

BLAST of Moc08g22240.1 vs.


Match Name	E-value	Identity	Description

BLAST of Moc08g22240.1 vs.


Match Name	E-value	Identity	Description

BLAST of Moc08g22240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A561VR60	9.9e-04	53.85	Glutamate--cysteine ligase EgtA OS=Actinoplanes teichomyceticus OX=1867 GN=egtA ...	[more]

BLAST of Moc08g22240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc08g22240	Moc08g22240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc08g22240.1.exon2	Moc08g22240.1.exon2	exon
Moc08g22240.1.exon1	Moc08g22240.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc08g22240.1	cds.Moc08g22240.1_2	CDS
cds.Moc08g22240.1	cds.Moc08g22240.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc08g22240.1	Moc08g22240.1-protein	polypeptide