Moc08g15060.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g15060.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
Locationchr8: 11646885 .. 11648756 (-)
Sequence length732
RNA-Seq ExpressionMoc08g15060.1
SyntenyMoc08g15060.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGAGGACACGTGGAAGGGCTTGGGGAAGCTTCAAAACACACGAAAACTTTGTGTTTTACATTAAGGGCATTCTTGGAATTGGACAAGGTGCCTAGCTTGGGTTTTTTTCTACACAAAATTGTAATTTTCATTAGAAATCAACTCTAAATAATTAAAAATGTCCTATATGCATGTATAACCTAAGATAACTCCAAATGAAACGTTTTTAGACACTAAACTAAGCTTAAAACACGGAGAAAACAGCACCTAACTAGTTCCTTTTTATCCTTATAAACAAGGGAAATCAAAGCACGTGGCACTGCACACAATGTGTGTAGGTTTGATATGAATAGTGAAACATTTGATGTTACCACTACAATTAATCCACAGACGTTTACAGATGGAGCCACACATCGTGTGAATTGCAAGCAGCAATCATGCCAATGTAATAAGTGGCAATGGTACAAGATTCCTTGTTCCCATGCCATTGCAGTTTGTGCAAGCGTCAGCATGGATTATTTGTTATACATAGACAAGCATTATAATATGGAGACCTATATATCTTGTTATTCACCCATCTTTGAACCTATTCCGGATAAAAGAAGCTAACCCACCTCTAACTTCATCAAAATTCATTCTGATAAAAATTTAGTGAGAGGTGCCAGCAGACCATCTACATCTCACAAGCATAATGAGATGGATTAGAGGGAGCCATCAATAAAAATACGTTGTGGAATTTGTAGGCAAGAAGGGCATAATCGACGAAATTGCCTTAATCGAGGTCATAATCCCACTTCTTGATGTTTGATGTAACATTTTCTGTGTAATTTTTATTGCCCTAGTGTTTTCCATTTTACATTTTCCATTGTGGCATTTTTCATGTAATCATACTGGAATCATTGATGAATGTAATGTTTTACATTAAATCTTAACTTAATTCACAGTGTAAACAAATAAATATTGTATTAAACTAATGAATATATGGTTTATTAATCTACTAAACTATCAGAATATGGAGGATAATAATAGAATAGGACCGTATGATTCATCTGTTTTACATCTTCAAGGTATACAGTCTGAGTTGGTCTCGCAAACTGGATACACCGACCCCTTACATTGTAGACGTCGAGATGCTGCTATTAGTAGGTTGACATGTCCAAATCCTTGCATAGATTCATATCTACGACAAGTAGGATTTTATGGTGTTTCACGTTTGAATTTTATACAGTTAGACTGACATTTGATCACAGCTTTGGTGGAGCTCTGGCGACAAGAGACACACACATTTCACTTGCCGCATGGAGAGTGTACTATCACATTACAGGATGTTGTCATCCAATTTGGACTACCTATAGACGGGAAGCTCTTGTTGGATCATTTCAGAACACTTGGCGGGATGTGTGTACTGAATTACTAGGTGTTACATCAGGAAAAAGAGATTTAGTTGGTGTTCGTCTTAGCTTACCATGGTTGGCAAACCAGTTTGATGATTTTGCCCATCTGCCAGATGATGTTGATGATGAGGCTCTGCAACGTTATACTAGGGCATACATTCTTACCCTTATTTGAGGTATTGTATTTTCAGATAAGTCGAACAATAGAGTTCACTTGATGTACATACCTCTACTAGCAGATTTTGATATAGCTGAACGAAATATGGAAGAACCAACACAACAAGGGCGTAACCAACGGAAGGTTCTCCCCCTATCTCCGACATTGTTCTCCGACGATGCCCCCTGGGCGAAAGGGGCCATCAGCCTCTTTCTTTCTTCAATCGTTCCGATCAGGACAAATGGGTTAGTTCCTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGTGATCATGTTGGGCGAAAGGTAGTTGTAGAAGAGCGATTGTGA

mRNA sequence

ATGCATGGAGGACACGTGGAAGGGCTTGGGGAAGCTTCAAAACACACGAAAACTTTGTGTTTTACATTAAGGGCATTCTTGGAATTGGACAAGGTATACAGTCTGAGTTGGTCTCGCAAACTGGATACACCGACCCCTTACATTGTAGACGTCGAGATGCTGCTATTAGTAGTTAGACTGACATTTGATCACAGCTTTGGTGGAGCTCTGGCGACAAGAGACACACACATTTCACTTGCCGCATGGAGAGTGTACTATCACATTACAGGATGTTGTCATCCAATTTGGACTACCTATAGACGGGAAGCTCTTGTTGGATCATTTCAGAACACTTGGCGGGATGTGTGTACTGAATTACTAGGTGTTACATCAGGAAAAAGAGATTTAGTTGGTGTTCGTCTTAGCTTACCATGGTTGGCAAACCAGTTTGATGATTTTGCCCATCTGCCAGATGATGTTGATGATGAGGCTCTGCAACATTTTGATATAGCTGAACGAAATATGGAAGAACCAACACAACAAGGGCGTAACCAACGGAAGGTTCTCCCCCTATCTCCGACATTGTTCTCCGACGATGCCCCCTGGGCGAAAGGGGCCATCAGCCTCTTTCTTTCTTCAATCGTTCCGATCAGGACAAATGGGTTAGTTCCTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGTGATCATGTTGGGCGAAAGGTAGTTGTAGAAGAGCGATTGTGA

Coding sequence (CDS)

ATGCATGGAGGACACGTGGAAGGGCTTGGGGAAGCTTCAAAACACACGAAAACTTTGTGTTTTACATTAAGGGCATTCTTGGAATTGGACAAGGTATACAGTCTGAGTTGGTCTCGCAAACTGGATACACCGACCCCTTACATTGTAGACGTCGAGATGCTGCTATTAGTAGTTAGACTGACATTTGATCACAGCTTTGGTGGAGCTCTGGCGACAAGAGACACACACATTTCACTTGCCGCATGGAGAGTGTACTATCACATTACAGGATGTTGTCATCCAATTTGGACTACCTATAGACGGGAAGCTCTTGTTGGATCATTTCAGAACACTTGGCGGGATGTGTGTACTGAATTACTAGGTGTTACATCAGGAAAAAGAGATTTAGTTGGTGTTCGTCTTAGCTTACCATGGTTGGCAAACCAGTTTGATGATTTTGCCCATCTGCCAGATGATGTTGATGATGAGGCTCTGCAACATTTTGATATAGCTGAACGAAATATGGAAGAACCAACACAACAAGGGCGTAACCAACGGAAGGTTCTCCCCCTATCTCCGACATTGTTCTCCGACGATGCCCCCTGGGCGAAAGGGGCCATCAGCCTCTTTCTTTCTTCAATCGTTCCGATCAGGACAAATGGGTTAGTTCCTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGTGATCATGTTGGGCGAAAGGTAGTTGTAGAAGAGCGATTGTGA

Protein sequence

MHGGHVEGLGEASKHTKTLCFTLRAFLELDKVYSLSWSRKLDTPTPYIVDVEMLLLVVRLTFDHSFGGALATRDTHISLAAWRVYYHITGCCHPIWTTYRREALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQHFDIAERNMEEPTQQGRNQRKVLPLSPTLFSDDAPWAKGAISLFLSSIVPIRTNGLVPFVLLSTQFSVFVRDHVGRKVVVEERL
Homology
BLAST of Moc08g15060.1 vs. NCBI nr
Match: XP_022156071.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-21
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 101 REALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQH 160
           R+AL+GSFQ+TWRDVCTEL+GVT G+RDLVG RLSLPWLANQFDDFAHLPDDVDD ALQ 
Sbjct: 117 RKALIGSFQHTWRDVCTELIGVTPGERDLVGDRLSLPWLANQFDDFAHLPDDVDDVALQR 176

Query: 161 F 162
           +
Sbjct: 177 Y 177

BLAST of Moc08g15060.1 vs. NCBI nr
Match: GEZ52548.1 (ATPase subunit 1, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-21
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 169 EEPTQQGRNQRKVLPLSPTLFSDDAPWAKGAISLFLSSIVPIRTNGLVPFVLLSTQFSVF 228
           EEPT +G  QRKVL LSPTLFSDD PWAKG   LFLSSIVPIRT+GLV FVLLSTQFSVF
Sbjct: 79  EEPTLKGCKQRKVLTLSPTLFSDDVPWAKGDTILFLSSIVPIRTSGLVRFVLLSTQFSVF 138

Query: 229 VRDHVGRKV 238
           VRDHVGRKV
Sbjct: 139 VRDHVGRKV 147

BLAST of Moc08g15060.1 vs. NCBI nr
Match: XP_022149384.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 9.0e-21
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 102 EALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQHF 161
           +AL+GSFQ+TWRDVCTELLGVT G+RDLVG RLSLPWLANQFDDF HLPDDVDD ALQ +
Sbjct: 101 KALIGSFQHTWRDVCTELLGVTPGERDLVGGRLSLPWLANQFDDFTHLPDDVDDVALQRY 160

BLAST of Moc08g15060.1 vs. NCBI nr
Match: GEY27810.1 (ribosomal protein L2, chloroplastic [Tanacetum cinerariifolium])

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-19
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 169 EEPTQQGRNQRKVLPLSPTLFSDDAPWAKGAISLFLSSIVPIRTNGLVPFVLLSTQFSVF 228
           EEPT +G  QRK+L LSPTLFSDD PWAKG   LFLS  VPIRT+GLV FVLLSTQFSVF
Sbjct: 209 EEPTLKGCKQRKILTLSPTLFSDDVPWAKGDTILFLSLNVPIRTSGLVRFVLLSTQFSVF 268

Query: 229 VRDHVGRKV 238
           VRDHVGRKV
Sbjct: 269 VRDHVGRKV 277

BLAST of Moc08g15060.1 vs. NCBI nr
Match: GEZ35290.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-18
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 169 EEPTQQGRNQRKVLPLSPTLFSDDAPWAKGAISLFLSSIVPIRTNGLVPFVLLSTQFSVF 228
           EEPT +G  ++KVL LS TLFSDD PWAKG   LFLSSIVPIRT+GLV FVLLS QFSVF
Sbjct: 219 EEPTLKGCKKQKVLTLSTTLFSDDVPWAKGDTILFLSSIVPIRTSGLVHFVLLSMQFSVF 278

Query: 229 VRDHVGRKVVVE 241
           VRDHVGRK+  +
Sbjct: 279 VRDHVGRKLAYQ 290

BLAST of Moc08g15060.1 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.6e-04
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 0

Query: 103 ALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQ 160
           A+ GS +  W D+C +LLG   G +DL G  +SL WL    ++F +LP D D+  L+
Sbjct: 125 AVTGSTKYNWADLCEDLLGHRPGPKDLHGSHVSLAWLR---ENFRNLPADPDEVTLK 178

BLAST of Moc08g15060.1 vs. ExPASy TrEMBL
Match: A0A6J1DTQ9 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111023038 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-22
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 101 REALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQH 160
           R+AL+GSFQ+TWRDVCTEL+GVT G+RDLVG RLSLPWLANQFDDFAHLPDDVDD ALQ 
Sbjct: 117 RKALIGSFQHTWRDVCTELIGVTPGERDLVGDRLSLPWLANQFDDFAHLPDDVDDVALQR 176

Query: 161 F 162
           +
Sbjct: 177 Y 177

BLAST of Moc08g15060.1 vs. ExPASy TrEMBL
Match: A0A6J1D6W5 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111017814 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 102 EALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQHF 161
           +AL+GSFQ+TWRDVCTELLGVT G+RDLVG RLSLPWLANQFDDF HLPDDVDD ALQ +
Sbjct: 101 KALIGSFQHTWRDVCTELLGVTPGERDLVGGRLSLPWLANQFDDFTHLPDDVDDVALQRY 160

BLAST of Moc08g15060.1 vs. ExPASy TrEMBL
Match: A0A5N6LJV3 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_41711 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-10
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 169 EEPTQQGRNQRKVLPLSPTLFSDDAPWAKGAISLFLSSIVPIRTNGLV-PF 219
           EEPT +G  Q+KVL LSPTLFSDD PWAKG   LFLSSIVPIRT+GLV PF
Sbjct: 64  EEPTLKGCKQQKVLTLSPTLFSDDVPWAKGDTILFLSSIVPIRTSGLVFPF 114

BLAST of Moc08g15060.1 vs. ExPASy TrEMBL
Match: A0A5A7TH09 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45541G00120 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 167 NMEEPTQQGRNQRKVLPLSPTLFSDDAPWAKGAISLFLSS 207
           NMEEP  +GRNQRKVL LSPTLFSDD PWAKGA   FL S
Sbjct: 271 NMEEPRLKGRNQRKVLTLSPTLFSDDVPWAKGATLFFLQS 310

BLAST of Moc08g15060.1 vs. ExPASy TrEMBL
Match: A0A5D3C1Y3 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00400 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-06
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 57  VVRLTFDHSFGGALATRDTHISLAAWRVYYHITGCCHPIWTTYRREALVGSFQNTWRDVC 116
           +VRL FD+    AL TRD+HIS A       +      +      E L GS +  W  +C
Sbjct: 147 MVRLAFDYCTSRALETRDSHISHACRECTITLQDVVVQLGLPVDGEPLTGSLRYNWMLIC 206

Query: 117 TELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQHF 162
            + LGV     D+ G +LSLPWLA QF++   LP D +   +Q +
Sbjct: 207 NDYLGVV--PPDMKGQQLSLPWLAQQFEE---LPPDANIVNVQRY 246

BLAST of Moc08g15060.1 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-05
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 0

Query: 103 ALVGSFQNTWRDVCTELLGVTSGKRDLVGVRLSLPWLANQFDDFAHLPDDVDDEALQ 160
           A+ GS +  W D+C +LLG   G +DL G  +SL WL    ++F +LP D D+  L+
Sbjct: 125 AVTGSTKYNWADLCEDLLGHRPGPKDLHGSHVSLAWLR---ENFRNLPADPDEVTLK 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156071.11.1e-2183.61serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
GEZ52548.13.1e-2184.06ATPase subunit 1, mitochondrial [Tanacetum cinerariifolium][more]
XP_022149384.19.0e-2183.33serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
GEY27810.11.3e-1979.71ribosomal protein L2, chloroplastic [Tanacetum cinerariifolium][more]
GEZ35290.12.5e-1873.61hypothetical protein [Tanacetum cinerariifolium][more]
Match NameE-valueIdentityDescription
Q9LNG53.6e-0440.35Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana... [more]
Match NameE-valueIdentityDescription
A0A6J1DTQ95.1e-2283.61serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6J1D6W54.4e-2183.33serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A5N6LJV34.5e-1076.47Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_41711 PE=4 SV=1[more]
A0A5A7TH092.7e-0777.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C1Y33.0e-0636.19Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
AT1G48120.12.5e-0540.35hydrolases;protein serine/threonine phosphatases [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc08g15060Moc08g15060gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc08g15060.1.exon4Moc08g15060.1.exon4exon
Moc08g15060.1.exon3Moc08g15060.1.exon3exon
Moc08g15060.1.exon2Moc08g15060.1.exon2exon
Moc08g15060.1.exon1Moc08g15060.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc08g15060.1cds.Moc08g15060.1_4CDS
cds.Moc08g15060.1cds.Moc08g15060.1_3CDS
cds.Moc08g15060.1cds.Moc08g15060.1_2CDS
cds.Moc08g15060.1cds.Moc08g15060.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc08g15060.1Moc08g15060.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance