Moc08g13140.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g13140.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pentatricopeptide repeat-containing protein
Location	chr8: 9996751 .. 9997092 (+)
Sequence length	342
RNA-Seq Expression	Moc08g13140.1
Synteny	Moc08g13140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCACCGCCGGCTTCTGTGTTGCCTTGTCTCTGGCTGTCTTCGTCGCCATTGCAGCCGGAATTCAGCCCTCTTCAATCTCGGCATCTCCGGCTGTTTCACCTCATACAACTTCTCAAAATATGTCTTCGTTTTTTCCTTCTCCGAGTGATGAGCGTTCTTCTCCGATGTCTGCAGCTCCTTCGAACTCGGAGGCGCCGGCGCCGGCGCCGGACTCCGGCGAGTTCATGGGGAAAAGTGGGTCCGGTTCTGTTGAGCTGAATCTTGACCTCTCTGTATTCGGTCTGAGCCTTTGTGTTTTCTTTAGTTCAAGACTGTTTGTTAATGTTCGAGTGTGA

mRNA sequence

ATGGCTGCCACCGCCGGCTTCTGTGTTGCCTTGTCTCTGGCTGTCTTCGTCGCCATTGCAGCCGGAATTCAGCCCTCTTCAATCTCGGCATCTCCGGCTGTTTCACCTCATACAACTTCTCAAAATATGTCTTCGTTTTTTCCTTCTCCGAGTGATGAGCGTTCTTCTCCGATGTCTGCAGCTCCTTCGAACTCGGAGGCGCCGGCGCCGGCGCCGGACTCCGGCGAGTTCATGGGGAAAAGTGGGTCCGGTTCTGTTGAGCTGAATCTTGACCTCTCTGTATTCGGTCTGAGCCTTTGTGTTTTCTTTAGTTCAAGACTGTTTGTTAATGTTCGAGTGTGA

Coding sequence (CDS)

ATGGCTGCCACCGCCGGCTTCTGTGTTGCCTTGTCTCTGGCTGTCTTCGTCGCCATTGCAGCCGGAATTCAGCCCTCTTCAATCTCGGCATCTCCGGCTGTTTCACCTCATACAACTTCTCAAAATATGTCTTCGTTTTTTCCTTCTCCGAGTGATGAGCGTTCTTCTCCGATGTCTGCAGCTCCTTCGAACTCGGAGGCGCCGGCGCCGGCGCCGGACTCCGGCGAGTTCATGGGGAAAAGTGGGTCCGGTTCTGTTGAGCTGAATCTTGACCTCTCTGTATTCGGTCTGAGCCTTTGTGTTTTCTTTAGTTCAAGACTGTTTGTTAATGTTCGAGTGTGA

Protein sequence

MAATAGFCVALSLAVFVAIAAGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSPMSAAPSNSEAPAPAPDSGEFMGKSGSGSVELNLDLSVFGLSLCVFFSSRLFVNVRV

Homology

[Close]

BLAST of Moc08g13140.1 vs. NCBI nr
Match: XP_022934640.1 (uncharacterized protein LOC111441775 [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-19
Identity = 72/111 (64.86%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 2   AATAGFCVALSLAVFVAIAAGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSPMSAA 61
           AA A FCVALSLA F A++     S+ISASP V PH  SQNMSSFFPSP D RSSP+SAA
Sbjct: 4   AAAAFFCVALSLAAFFAVSPA-AVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISAA 63

Query: 62  PSNSEAPAPAPDSGEFMGK-SGSGSVELNLDLSVFGLSLCVFFSSRLFVNV 112
           P    APA A +SGEF+GK SGS SV+LN  +S FGLS+C  FS RLF+NV
Sbjct: 64  P----APATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of Moc08g13140.1 vs. NCBI nr
Match: XP_022983589.1 (uncharacterized protein LOC111482150 [Cucurbita maxima])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   AATAGFCVALSLAVFVAIAAGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSPMSAA 61
           AA + FCVALSLA   A++     S+ISASP V PH  SQNMSSFFPSP D RSSP+SA 
Sbjct: 9   AAASFFCVALSLATLFALSPS-AVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA- 68

Query: 62  PSNSEAPAPAPDSGEFMGK-SGSGSVELNLDLSVFGLSLCVFFSSRLFVNV 112
                  APA +SGEF+GK SGS SV+LN  +S FGLS+C  F  RL +NV
Sbjct: 69  -------APALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of Moc08g13140.1 vs. NCBI nr
Match: KAE8021266.1 (hypothetical protein FH972_007173 [Carpinus fangiana])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 58/102 (56.86%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MAATAGFCVALSLAVFVAIAAGIQPS---SISASPAVSPHTTSQNMSSFFPSPSDERSSP 60
           MA +  FC ALS+A+F AI  G   +   +ISASPAV+P+ TS NMSSFFPSPSD+R  P
Sbjct: 1   MATSTKFCAALSMAIFFAILHGRSSTCEPTISASPAVTPYITSPNMSSFFPSPSDQR-PP 60

Query: 61  MSAAPSNSEAPAPAPDSGEFMGKSGSGSVELNLDLSVFGLSL 100
            SAAP NSEA AP P SGEF+GKS S SV     +++ G+ L
Sbjct: 61  SSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITICGVGL 101

[Close]

BLAST of Moc08g13140.1 vs. NCBI nr
Match: KAF5479257.1 (hypothetical protein F2P56_000093, partial [Juglans regia])

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-10
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 1   MAATAGFCVALSLAVFVAIA---AGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSP 60
           MA    FC ALS+A+  AI+   +     +ISASP+V P+ T+ NMSSFFPSPS  +  P
Sbjct: 7   MATITNFCAALSVAIIFAISNAPSSTSEPTISASPSVLPYVTAPNMSSFFPSPS-AQGPP 66

Query: 61  MSAAPSNSEAPAPAPDSGEFMGKSGSGSVELNLDLSVFGLSLCVFFSSRL 108
            SA P NSE  AP P SGEF+GKS S S  L+    + G  L   F +RL
Sbjct: 67  NSATPPNSETLAPVPSSGEFVGKSSSDSTRLDSGTFISGFGLVSMFVTRL 115

[Close]

BLAST of Moc08g13140.1 vs. NCBI nr
Match: KAG2717995.1 (hypothetical protein I3760_03G200300 [Carya illinoinensis] >KAG7955482.1 hypothetical protein I3843_11G073200 [Carya illinoinensis])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MAATAGFCVALSLAVFVAIAAGIQPSS---ISASPAVSPHTTSQNMSSFFPSPSDERSSP 60
           MA    FC ALS+A+  AI+      S   ISASP+V P+ T+ NMSSFFPSPS  +  P
Sbjct: 1   MATITNFCAALSVAIIFAISHAPSSKSEPTISASPSVLPYVTAPNMSSFFPSPS-VQGPP 60

Query: 61  MSAAPSNSEAPAPAPDSGEFMGKSGSGSVELNLDLSVFGLSL-CVFFSSRLFV 110
            S  P NSE  AP P SGEF+GKS S S  L+  + + G  L  +F +S +FV
Sbjct: 61  SSTTPPNSETLAPVPSSGEFVGKSSSDSTRLDSGILISGFGLVSMFMTSLIFV 112

[Close]

BLAST of Moc08g13140.1 vs. ExPASy TrEMBL
Match: A0A6J1F8A3 (uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC111441775 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 72/111 (64.86%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 2   AATAGFCVALSLAVFVAIAAGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSPMSAA 61
           AA A FCVALSLA F A++     S+ISASP V PH  SQNMSSFFPSP D RSSP+SAA
Sbjct: 4   AAAAFFCVALSLAAFFAVSPA-AVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISAA 63

Query: 62  PSNSEAPAPAPDSGEFMGK-SGSGSVELNLDLSVFGLSLCVFFSSRLFVNV 112
           P    APA A +SGEF+GK SGS SV+LN  +S FGLS+C  FS RLF+NV
Sbjct: 64  P----APATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of Moc08g13140.1 vs. ExPASy TrEMBL
Match: A0A6J1J7U9 (uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   AATAGFCVALSLAVFVAIAAGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSPMSAA 61
           AA + FCVALSLA   A++     S+ISASP V PH  SQNMSSFFPSP D RSSP+SA 
Sbjct: 9   AAASFFCVALSLATLFALSPS-AVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA- 68

Query: 62  PSNSEAPAPAPDSGEFMGK-SGSGSVELNLDLSVFGLSLCVFFSSRLFVNV 112
                  APA +SGEF+GK SGS SV+LN  +S FGLS+C  F  RL +NV
Sbjct: 69  -------APALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of Moc08g13140.1 vs. ExPASy TrEMBL
Match: A0A5N6QUU6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 58/102 (56.86%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MAATAGFCVALSLAVFVAIAAGIQPS---SISASPAVSPHTTSQNMSSFFPSPSDERSSP 60
           MA +  FC ALS+A+F AI  G   +   +ISASPAV+P+ TS NMSSFFPSPSD+R  P
Sbjct: 1   MATSTKFCAALSMAIFFAILHGRSSTCEPTISASPAVTPYITSPNMSSFFPSPSDQR-PP 60

Query: 61  MSAAPSNSEAPAPAPDSGEFMGKSGSGSVELNLDLSVFGLSL 100
            SAAP NSEA AP P SGEF+GKS S SV     +++ G+ L
Sbjct: 61  SSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITICGVGL 101

[Close]

BLAST of Moc08g13140.1 vs. ExPASy TrEMBL
Match: A0A2N9I0C8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MAATAGFCVALSLAVFVAI---AAGIQPSSISASPAVSPHTTSQNMSSFFPSPSDERSSP 60
           MA     C ALS+ +  AI    +     +ISASPAVSP+ T+ NMSSFF SPS +R   
Sbjct: 1   MATITKSCAALSIVICFAILYAPSSTSEPTISASPAVSPYVTAPNMSSFFNSPSVQRPLS 60

Query: 61  MSAAPSNSEAPAPAPDSGEFMGKSGSGSVELNLDLSVFGLSLCVFFSSRL 108
            +AAP +SEA  P P SGEF+G+S S S   +L +++FG+ L   F +RL
Sbjct: 61  SAAAP-HSEAITPVPRSGEFVGRSSSNSARSDLGITIFGVGLVCLFVTRL 109

[Close]

BLAST of Moc08g13140.1 vs. ExPASy TrEMBL
Match: K7MXM2 (Uncharacterized protein OS=Glycine max OX=3847 GN=102661637 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 13  LAVFVAIAAGIQPSS-----ISASPAVSPHTTSQNMSSFFPSPSDERSSPMSA-APSNSE 72
           L + +  + G+  SS     ISASP V P+ T+ ++SSFFP+P    + PMS+ AP  +E
Sbjct: 15  LVILLTNSKGVSSSSTSEPTISASPGVLPYVTAPDISSFFPTP--RANQPMSSGAPFEAE 74

Query: 73  APAPAPDSGEFMGKSGSGSVELNLDLSVFGLSLCVFFSSRLFV 110
           APAPAP SGEF GK  S S  LN   ++ G+ LC  F S + V
Sbjct: 75  APAPAPSSGEFEGKKSSASARLNCAGAIVGVLLCCAFLSSIVV 115

[Close]

BLAST of Moc08g13140.1 vs. TAIR 10
Match: AT1G12845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.5e-04
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 10 ALSLAVFVAIAAGIQ------PSSISASPAVSPHTTSQNMSSFFPSPSDERSSPMSAAPS 69
          ++S++ F+ I   +Q       S+I ASPAV P+  + +MSSFFPSP+ +     + +P 
Sbjct: 6  SVSVSAFLLIVVSVQWTLVCSESTILASPAVLPYINAPDMSSFFPSPTKDWPIETATSPV 65

Query: 70 NSEAPAPAPDSGEFMGKSGSGSVELNLDLSV 95
            E  AP P SG+  GK    S+ L+ D+S+
Sbjct: 66 -PEPEAPGPSSGQLNGKISGRSMRLHPDISL 95

The following BLAST results are available for this feature:

BLAST of Moc08g13140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934640.1	2.3e-19	64.86	uncharacterized protein LOC111441775 [Cucurbita moschata]	[more]
XP_022983589.1	2.6e-15	58.56	uncharacterized protein LOC111482150 [Cucurbita maxima]	[more]
KAE8021266.1	5.0e-14	56.86	hypothetical protein FH972_007173 [Carpinus fangiana]	[more]
KAF5479257.1	5.7e-10	48.18	hypothetical protein F2P56_000093, partial [Juglans regia]	[more]
KAG2717995.1	2.2e-09	47.79	hypothetical protein I3760_03G200300 [Carya illinoinensis] >KAG7955482.1 hypothe...	[more]

BLAST of Moc08g13140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g13140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8A3	1.1e-19	64.86	uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J7U9	1.3e-15	58.56	uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150...	[more]
A0A5N6QUU6	2.4e-14	56.86	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1	[more]
A0A2N9I0C8	6.8e-09	46.36	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1	[more]
K7MXM2	8.3e-07	44.66	Uncharacterized protein OS=Glycine max OX=3847 GN=102661637 PE=4 SV=1	[more]

BLAST of Moc08g13140.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12845.1	6.5e-04	36.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc08g13140	Moc08g13140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc08g13140.1.exon1	Moc08g13140.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc08g13140.1	cds.Moc08g13140.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc08g13140.1	Moc08g13140.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane