Moc08g02560.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g02560.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr8: 1762928 .. 1763232 (-)
Sequence length	204
RNA-Seq Expression	Moc08g02560.1
Synteny	Moc08g02560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCATAAAGAGTGGGTGCATGTCCTTTTATGCATCTTCTCAGGAGACACTCCGATATGTCAAAGCTTTTTTCGTCGGCTGGGTGAGTAATTAATTAATTAAATTAATTATCTCTCTCTCTATCTCTCTGCAGGAGAGGAATTAGATTTAAGAACAACGACGTTTTAATTTGGTTGGCTGCAGGGAAAGAAGATGACAGCTAAGACCGAAGAGGAAGCGGCAAAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGCAGCCGAGAACACCAAGAACCAACTTAATTAA

mRNA sequence

ATGGATCGCATAAAGAGTGGGTGCATGTCCTTTTATGCATCTTCTCAGGAGACACTCCGATATGTCAAAGCTTTTTTCGTCGGCTGGGGAAAGAAGATGACAGCTAAGACCGAAGAGGAAGCGGCAAAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGCAGCCGAGAACACCAAGAACCAACTTAATTAA

Coding sequence (CDS)

ATGGATCGCATAAAGAGTGGGTGCATGTCCTTTTATGCATCTTCTCAGGAGACACTCCGATATGTCAAAGCTTTTTTCGTCGGCTGGGGAAAGAAGATGACAGCTAAGACCGAAGAGGAAGCGGCAAAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGCAGCCGAGAACACCAAGAACCAACTTAATTAA

Protein sequence

MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAENTKNQLN

Homology

[Close]

BLAST of Moc08g02560.1 vs. NCBI nr
Match: XP_022132044.1 (uncharacterized protein LOC111005010 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE
Sbjct: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 61 NTKNQLN 68
          NTKNQLN
Sbjct: 61 NTKNQLN 67

[Close]

BLAST of Moc08g02560.1 vs. NCBI nr
Match: KAA0065108.1 (hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+ADLKTAKMQVQATEAAE
Sbjct: 30 MDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEADLKTAKMQVQATEAAE 89

Query: 61 NTKN 65
          N KN
Sbjct: 90 NLKN 93

[Close]

BLAST of Moc08g02560.1 vs. NCBI nr
Match: XP_008444894.1 (PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+ADL+TAKMQVQATEAAE
Sbjct: 30 MDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEADLRTAKMQVQATEAAE 89

Query: 61 NTKN 65
          N KN
Sbjct: 90 NLKN 93

[Close]

BLAST of Moc08g02560.1 vs. NCBI nr
Match: XP_023001883.1 (uncharacterized protein LOC111495934 [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GCM+ YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+ADLK AKMQV+ATEAAE
Sbjct: 29 MDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAE 88

Query: 61 NTK 64
          NTK
Sbjct: 89 NTK 91

[Close]

BLAST of Moc08g02560.1 vs. NCBI nr
Match: XP_022951050.1 (uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothetical protein SDJN03_18085, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GC + YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+ADLK AKMQV+ATEAAE
Sbjct: 33 MDRVKKGCRAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAE 92

Query: 61 NTK 64
          N K
Sbjct: 93 NAK 95

[Close]

BLAST of Moc08g02560.1 vs. ExPASy TrEMBL
Match: A0A6J1BRY6 (uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005010 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE
Sbjct: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 61 NTKNQLN 68
          NTKNQLN
Sbjct: 61 NTKNQLN 67

[Close]

BLAST of Moc08g02560.1 vs. ExPASy TrEMBL
Match: A0A5A7VBV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004430 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+ADLKTAKMQVQATEAAE
Sbjct: 30 MDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEADLKTAKMQVQATEAAE 89

Query: 61 NTKN 65
          N KN
Sbjct: 90 NLKN 93

[Close]

BLAST of Moc08g02560.1 vs. ExPASy TrEMBL
Match: A0A1S3BC67 (uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+ADL+TAKMQVQATEAAE
Sbjct: 30 MDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEADLRTAKMQVQATEAAE 89

Query: 61 NTKN 65
          N KN
Sbjct: 90 NLKN 93

[Close]

BLAST of Moc08g02560.1 vs. ExPASy TrEMBL
Match: A0A6J1KRV8 (uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.0e-20
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GCM+ YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+ADLK AKMQV+ATEAAE
Sbjct: 29 MDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAE 88

Query: 61 NTK 64
          NTK
Sbjct: 89 NTK 91

[Close]

BLAST of Moc08g02560.1 vs. ExPASy TrEMBL
Match: A0A6J1GHI8 (uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC111454014 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-19
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60
          MDR+K GC + YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+ADLK AKMQV+ATEAAE
Sbjct: 33 MDRVKKGCRAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAE 92

Query: 61 NTK 64
          N K
Sbjct: 93 NAK 95

[Close]

BLAST of Moc08g02560.1 vs. TAIR 10
Match: AT2G38465.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 2  DRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAEN 61
          DR+K+ C+S   + QE   YVKAFFVG  K++TAK E+EA +A L   KMQV AT+ AEN
Sbjct: 16 DRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTETKMQVDATDEAEN 75

Query: 62 TKNQLN 68
           K +L+
Sbjct: 76 AKKRLH 81

The following BLAST results are available for this feature:

BLAST of Moc08g02560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132044.1	1.1e-26	100.00	uncharacterized protein LOC111005010 [Momordica charantia]	[more]
KAA0065108.1	2.1e-20	85.94	hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa]	[more]
XP_008444894.1	4.7e-20	84.38	PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo]	[more]
XP_023001883.1	1.0e-19	84.13	uncharacterized protein LOC111495934 [Cucurbita maxima]	[more]
XP_022951050.1	2.0e-18	80.95	uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothet...	[more]

BLAST of Moc08g02560.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g02560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRY6	5.6e-27	100.00	uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7VBV2	1.0e-20	85.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BC67	2.3e-20	84.38	uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=...	[more]
A0A6J1KRV8	5.0e-20	84.13	uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934...	[more]
A0A6J1GHI8	9.5e-19	80.95	uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]

BLAST of Moc08g02560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38465.1	6.5e-12	53.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc08g02560	Moc08g02560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc08g02560.1.exon2	Moc08g02560.1.exon2	exon
Moc08g02560.1.exon1	Moc08g02560.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc08g02560.1	cds.Moc08g02560.1_2	CDS
cds.Moc08g02560.1	cds.Moc08g02560.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc08g02560.1	Moc08g02560.1-protein	polypeptide