Moc07g03620.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g03620.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr7: 3155096 .. 3160655 (+)
Sequence length	1230
RNA-Seq Expression	Moc07g03620.1
Synteny	Moc07g03620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCAACGATTACAATGGAAGGAACGCTCAAAGATGAAGGCTCCTCGTCTACAACCATGGGAAAGTCAAAAACTCAGCTTACCATTCAACTCTTCCATCGATGTGCAAGCCTCATTTCAATTAAGTTGAACTTCACAAACTATTTGTTGTGGAAGTCACATGTGTTGACTCTCATAAAAAACCTTGGACTTGAACAACATTTAACTCATGACGGGCCTACTGTAGAAGAAGAGGAAGATCCAGAAGATAGTGGAAAAGGTGCGACCACAAAAAATCAGCAAGCAATATGGTTCGGTAATGACGGTCTTTTAACTTCTTGGCTTTTAGGCATCATTTCTGAGGATATATTAGCTGTGCTTGAATCTATTGATAAAATGCTAATATCAAGTTTGGACCTCTCTTGAAGAGTTATCACTAATAGTGACCAAGGAAAACGAGTTGCATCTCAAGGAAACTCTTCTTAATCTTAAGAAAGGAAACCAATCTCTTGAAGATAATATCAAAAAATTCAAAGCTGTGTGTGACAAATTGGCAGTAACGAAGAAGCGTCTTGATGATCTCACAAAAGTACTGCACTTGGCAAGAGGACCAGGCACTAGATATAAAGATTTAAGAATTGCTATGCTCTCAAAACCGCCATACCCCTCATATAATCAATTTGTATTAGCCCTCAAAAATAATGATCAACAACTTATTATAGAAGAAGAAGAGGAGAAAAGCAGCCAATTGATTCCCAAATTGGCTATCTTTACTCAACATGGAAGAGGCAGAGGAAGAAATTTCTATCCTAGGGGAAGAGGTTTTCAGCATAACATATCACAATACACTCATAATAGCCATTAAGGTAACAAATTTTTTCTTCAAAAAAACAATAATGGCAATGTTCCTCTCAGTACAGATCAAAGAGTATGTTGTCAAATCTGTGGGCAGTTCAATCACAAAACACTAGAATGTAGAAAGAGATTTCACAATTCGTTTCAATCCGAAGAAATCCCAACTGCATTGGCTGCGTTGCATTTGAATGAGGAGAGTGAACAATCTTTATGCCGATTCTAGAGCCACCTCACACATACTAAACGATCCAGGTAATGTTTATTCTGTCAAACCATATGCTAGACATGAGAAACTTTATTTTGGAGATGGAAATCGTTTGAAAATAATACACACGGGTCTGTAGGATCGAATGATAATACTAGAGGGGGGTGAATAGGGTTGCTTACCACTTTTTAAAAAATTAAAAATAAATTCAAGGTAACGAACAATTATGCAATCAATAAAAGAAGATTAACAAGAAAATGAAATAATGATCAAAATATTTAAGTAAACCTATATGCAATCTACCAAGATTCAAAGTAGATAAATACTAAAATTAAAAGAGATAAGAGAAGAGAGTGGTGACACTGAGAATTTTTATAGTGGTTCGGAAATTCCTACTCCACTCCCCAAGACTCCTTCTTGGGTATTTTACTGCAGTGACCCTCTTAACGGGTGAGAACCAAACCAATCGACCCTCTTTTTGTCCTAGACTAAAGAGAAACCTAAAATCCTTTTTACTGGTTCAGGATCCAACCAATTTACTTTTCTCACAACCTAAGGTGTACCCACACCTTAATACACAACCCAATTTAAAAATAAAGAATTAAAAAAAAAAAAAGTGGATTACACAAATTTTGCACCAAAGTAATGGCTAAAAAACCACACTCTAATGAATCTCTCACAAAAAAATGAGCAAGTTATGTGTAGGAGAGAATGAAGATTTTGCAAAAGTTGAGAGGAGAATTTGAAAACAAATGATTTTGCTTTGATAGTTGGGGTATAGAATGATGGAATTTGGTGGCTTTAGATAGAGTTTCTATGATGAATTTTGGCCATTGGATTTAGGGCAACAAAGGATGAATGATATAGATTAAGATGTGAGGTAAGGAAATGAAATGAAAACATAATTATGGTCATTAAAAGAAATTGGTGGAGATTGAGAAATCATTGAGATTGTGAGTGATTGAGGAGATTGAGAGTGATTGAGAGAAATTGGTGGAAATGGATTTGTAGAGATTAAAAGCGCCACATGTCATCTTCTCATTTGTTCGATTGTTGTATGCCACATCAGCATAAGTATGTCCTCTTGATGCCACATGTTAACTTCTAAGCGGTTCACTTGTCCGTGTCACGTATAATTTTTCTCCTAACTTATTTTGACCATAACTTCTTCGTTTAAACTTCGATTTGAGTGATTTGATATGCATTGGTTTTGTCTTTTCGAGCTCTACGCTATGGACACTTTGAAACACTCAAATTGTTAGTTTATACTTGGTTTGTGATCATCAAAATATTTGGTTTGATTGAAGCCATAAAGCTAACAGGGTCAATCTACACCACACACACATGAGAGATCTAAAGTTGAAAAACATATTCCCAAAATTAAAAAAAAATTATTCTCAGTTAGCAAATTAACAGAAGATAACAATTGCATTATAGATTTTGATACTAAGGGTTTTTTGGTTAAGGCCAAACAGGGAAGACTCTTGGCTGAAGGGCATAAAAGAGGTCTTTATGCTTTGGAAGATCAATAACCAGAACATGCTTTCCAAGCTTTTACTGCGTCTATTTTTTCAAATAAAACTTCTTACAACATTTGGCATAAGAGGATGGGTCACATAAATGATAAAATTTTGAAACTTCTAGCTAACAAAGAGCTTATTGAAGTGTCTAGTTGGAAGAAAGAGCAAAGTGTATGTGAAAATTGTCAATTGAGCAAACGTTGTAAGCTACCTAATGAAAAGCTTAGTTTAAATCCCTTTGACAAATTACATTGTGATTTGTGGGGTCCAACTCCCATTTTGTCATGTCAAAAGTTCAAGTACTATGCTAGCTTCATGGATGATTATTCGAGATAAACATGACTATATCCTCTAAAGAAAAAATCGGACTTTTATGCTTGCTTTGTGAAATTTCAGAACCTTGTAGAAAATCAATTTGACAAAAAAATAAAAGTATTCCAAAGCGACGGAGGAGGAGAGTTTCAATCTAAGGAGCTCAAACTTCTTCTTGAGCAAATTGGGATACATCATCAAATATCTTGTCCACACACCACAACAAAATGGTGTAGTGGAGAGAAAACATCGTCATGTGGTAGAAACAGGTTTAGCTATTCTTTATCAAGCTAAAGTACCTTCAAAATATTGGGTCGATAGCTTTCTTACGGCTGTATTCTTGATTAATAGAATGCCTTCTTCTTCTATAAATATGTGCTCTCCTTTTATGAAACTATATGGCAAGCACACTAACTACAACAATATCAAAGTTTTTGGTTGTAAATGCTTTCCCTATCTTAAAAGCAGAACAAAAGATAAGTTCTCAAAAAGAACCTATCCATGTGTGTTTATAGGATATAGTCCAGCCCATAAAGGCTATAGATACTTAGACCTTATATCAAATAAAGTATACATATCTAGGCATATAATATTTGATGAAGAATCTTTCCCTTTTGATAAAACTGTGACTAACTCTACACTCAAGGACAACCAAAAGCCAGTGGTCAAGAACTCCTCAACACTGAGAAGGTCTCGGTGCCAACCCTAGCTGGGTCGACTGGGTTGATTGTGATTGACTCGGGTTGCTGGGTGTTGGGATAATGGAGCCAAAATAGATGACCCTTGTCCTACGAAGAAAAAGATTTTCAACACTACTACGAATTCCTACAAGGAGTAGGATATTATTGTCTTATAAGGATTACAATATTGTTTTCCTATAAGGATTGAGATATTTGATCTCTTATAAATAGAACCCTTTTGTTAAGGTTTCGTTTGTACATAATCCAAATAAGAGAGACTTGAGTGGTTGTAGGTAGTGTGTGAAAAAATGAGTTTGTATCTCGTGGGTTTTAGTGAGGGTATTTTCAATTGTGTAATCCTAGGTAACCGTTGTTAGGCTACTTAGAAGCAATATTCCCAACTATAGTTGAACCTGCTTTTTTGCAGAAGACTGAACGTTGATAGGGGGGAACTAGTATAATCCCTGTGGTGTTAAGCTTTTATATCCCTATCTTTTATTCCTTTGTTATTTGTTACTTACTTATCTGCTTTTAGCCAGTGGAAGAGGAAAATCAAATAGTTCCTATTTGAAGAACTTACAGGAGGATCAATTGATTTATATTTTTTTTCCCCAAAAATTGGTATCAGAGAGTTTGGTTCAGAGGGTCATGGGATCAACAAAGAAGTCAGGTTTTGAATGAATCATGAAATTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACTTGTAAGAAGTTGAATAAAACTTTAAAGGAACGACCAATAGATATGAAAGATGAAGATTGGGTGGAGACGAATGAATAGACAGTTGCCTTTATCAGATTGTGTTTCTCGATGAATGTGACAAGTCTCGTAGCAAACGAAATGACAACAATAGATCTGATGAAAGCACTCGAGAATACGTACCAGAAACCCTCAACTAATAATAAGGTATATCTCGTAAGGAGATTCTTTAACATTCAAATGGAAGAGAATACTTCTATCAATTCCCACATAAACGAGGTCACAAAATTAATCAATCAATTGGCATCAGATAAAATTACTTTTAGTGATGAAGTGAATGCTATTCAGTTGCTAACATTTTTACCTGAAAGTTGGGAAACGATGAAGACAACAGTGTCCAATTCGTTAGGAGACACATTTTTGAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGTAAAGAAAAGGCTGCGTTCGATGACAGGTAGTAGAAGCATAGTAGGAGGGATTGGAAGAGAGATGTTGAATGTTTTCATTGCCACAGAAAATGCCACATCAAGAAAAACTGTAGAATATTAAAAGAGAATCTGAAAAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCCTCATCTATGTTGAAAGCAACACAGAAACAGGAAACAATTCATCGGAGTGGGTAATAGACAGCGCAGCTTCAGTACACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATCATGACCACGTGAGGATGGAGAATGAAAGACTTTCCAAGACTAAATGAATTGGAAATATACGATTGAGGACCGATAGTGGGACTAAGTTATTACTGCGAGATGTCAGGTATGTACCCAGTTTCAGAATGAACCTTATATCTACAGGTAAGTTAGACGATGATGGTTATCAGAGTGAGTTCGGTGGAAACAAGTGGAAGCTTACCAAAGGATCCAAGTTTGTGGCAGTTGGCCATAGAAGATCTACAGTTTACACGTCGCAGTTGAGTGTTGCTAGAGGATCATTGAAACAATGGATGCAAGTTGCAGTTGGTGTCCAAAAAGGTAGGACTAAGCCAGCAACAAAGACAACTAGAACAGATCAGGAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGCAAATATATTCTTTAGGTTGTCAGTGA

mRNA sequence

ATGAGATCAACGATTACAATGGAAGGAACGCTCAAAGATGAAGGCTCCTCGTCTACAACCATGGGAAAGTCAAAAACTCAGCTTACCATTCAACTCTTCCATCGATGTGCAAGCCTCATTTCAATTAAGTTGAACTTCACAAACTATTTGTTGTGGAAGTCACATGTGTTGACTCTCATAAAAAACCTTGGACTTGAACAACATTTAACTCATGACGGGCCTACTGTAGAAGAAGAGGAAGATCCAGAAGATAGTGGAAAAGAGTTATCACTAATAGTGACCAAGGAAAACGAGTTGCATCTCAAGGAAACTCTTCTTAATCTTAAGAAAGGAAACCAATCTCTTGAAGATAATATCAAAAAATTCAAAGCTGTGTGTGACAAATTGGCAGTAACGAAGAAGCGTCTTGATGATCTCACAAAAGTACTGCACTTGGCAAGAGGACCAGGCACTAGATATAAAGATTTAAGAATTGCTATGCTCTCAAAACCGCCATACCCCTCATATAATCAATTTGTATTAGCCCTCAAAAATAATGATCAACAACTTATTATAGAAGAAGAAGAGGAGAAAAGCAGCCAATTGATTCCCAAATTGGCTATCTTTACTCAACATGGAAGAGGCAGAGGAAGAAATTTCTATCCTAGGGGAAGAGGACAACCAAAAGCCAGTGGTCAAGAACTCCTCAACACTGAGAAGGTCTCGGTGCCAACCCTAGCTGGGTCGACTGGGTTGATTGTGATTGACTCGGGTTGCTGGGTTCTCGTAGCAAACGAAATGACAACAATAGATCTGATGAAAGCACTCGAGAATACGTACCAGAAACCCTCAACTAATAATAAGTTGGGAAACGATGAAGACAACAGTGTCCAATTCGTTAGGAGACACATTTTTGAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGATCCAAGTTTGTGGCAGTTGGCCATAGAAGATCTACAGTTTACACGTCGCAGTTGAGTGTTGCTAGAGGATCATTGAAACAATGGATGCAAGTTGCAGTTGGTGTCCAAAAAGGTAGGACTAAGCCAGCAACAAAGACAACTAGAACAGATCAGGAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGCAAATATATTCTTTAGGTTGTCAGTGA

Coding sequence (CDS)

ATGAGATCAACGATTACAATGGAAGGAACGCTCAAAGATGAAGGCTCCTCGTCTACAACCATGGGAAAGTCAAAAACTCAGCTTACCATTCAACTCTTCCATCGATGTGCAAGCCTCATTTCAATTAAGTTGAACTTCACAAACTATTTGTTGTGGAAGTCACATGTGTTGACTCTCATAAAAAACCTTGGACTTGAACAACATTTAACTCATGACGGGCCTACTGTAGAAGAAGAGGAAGATCCAGAAGATAGTGGAAAAGAGTTATCACTAATAGTGACCAAGGAAAACGAGTTGCATCTCAAGGAAACTCTTCTTAATCTTAAGAAAGGAAACCAATCTCTTGAAGATAATATCAAAAAATTCAAAGCTGTGTGTGACAAATTGGCAGTAACGAAGAAGCGTCTTGATGATCTCACAAAAGTACTGCACTTGGCAAGAGGACCAGGCACTAGATATAAAGATTTAAGAATTGCTATGCTCTCAAAACCGCCATACCCCTCATATAATCAATTTGTATTAGCCCTCAAAAATAATGATCAACAACTTATTATAGAAGAAGAAGAGGAGAAAAGCAGCCAATTGATTCCCAAATTGGCTATCTTTACTCAACATGGAAGAGGCAGAGGAAGAAATTTCTATCCTAGGGGAAGAGGACAACCAAAAGCCAGTGGTCAAGAACTCCTCAACACTGAGAAGGTCTCGGTGCCAACCCTAGCTGGGTCGACTGGGTTGATTGTGATTGACTCGGGTTGCTGGGTTCTCGTAGCAAACGAAATGACAACAATAGATCTGATGAAAGCACTCGAGAATACGTACCAGAAACCCTCAACTAATAATAAGTTGGGAAACGATGAAGACAACAGTGTCCAATTCGTTAGGAGACACATTTTTGAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGATCCAAGTTTGTGGCAGTTGGCCATAGAAGATCTACAGTTTACACGTCGCAGTTGAGTGTTGCTAGAGGATCATTGAAACAATGGATGCAAGTTGCAGTTGGTGTCCAAAAAGGTAGGACTAAGCCAGCAACAAAGACAACTAGAACAGATCAGGAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGCAAATATATTCTTTAGGTTGTCAGTGA

Protein sequence

MRSTITMEGTLKDEGSSSTTMGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHLTHDGPTVEEEEDPEDSGKELSLIVTKENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKDLRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGRGRNFYPRGRGQPKASGQELLNTEKVSVPTLAGSTGLIVIDSGCWVLVANEMTTIDLMKALENTYQKPSTNNKLGNDEDNSVQFVRRHIFEFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEKGSKFVAVGHRRSTVYTSQLSVARGSLKQWMQVAVGVQKGRTKPATKTTRTDQEDLPSIQEQQLGSQRTQIYSLGCQ

Homology

[Close]

BLAST of Moc07g03620.1 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 199.1 bits (505), Expect = 7.2e-47
Identity = 120/246 (48.78%), Postives = 147/246 (59.76%), Query Frame = 0


Query: 21  MGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHLTHDGPTVEEEE 80
           M   +  LT+Q FH+C+SLIS+KLN +NYLLWKS VL LI+ LGLE HL  + P V+E +
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 81  DPE---------------------------------------------DSGKELSLIVTK 140
             E                                              S +EL L +TK
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120

Query: 141 ENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKD 200
           ENE+HL E LL LKKG+ S+++ I+KFK +CD+L   KK LDDLTKV HLARG G +YKD
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKD 180

Query: 201 LRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHG--RGRGRNF 220
            R AMLSK PYPSYNQFVLALK +D Q + +EEEE+SSQ+    A F+  G  RGRGR F
Sbjct: 181 FRTAMLSKAPYPSYNQFVLALKAHD-QFLTDEEEERSSQVNLNQAFFSNRGRSRGRGRQF 240

[Close]

BLAST of Moc07g03620.1 vs. NCBI nr
Match: RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-36
Identity = 106/250 (42.40%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 17  SSTTMGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHL------- 76
           S  +M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL       
Sbjct: 42  SKASMANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHAS 101

Query: 77  ----------THD------------------GPTVEE----------EEDPEDSGKELSL 136
                     THD                  G   EE            D  +S  E  L
Sbjct: 102 KETMGTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLL 161

Query: 137 IVTKENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGT 196
            +TKE E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL KV  LA+G GT
Sbjct: 162 PMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGT 221

Query: 197 RYKDLRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGRGR 220
           +Y D R+AMLSKPPYPSYNQFVLAL+ ++Q ++ E EE K S +  + A FTQ GRGR R
Sbjct: 222 KYMDFRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKES-INHEQAYFTQRGRGRNR 281

[Close]

BLAST of Moc07g03620.1 vs. NCBI nr
Match: RVW93768.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-36
Identity = 104/264 (39.39%), Postives = 142/264 (53.79%), Query Frame = 0


Query: 21  MGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHLTHDGPTVEEEE 80
           M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL+ +    EE  
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60

Query: 81  DPEDS-------------------------GKELSLI--------------------VTK 140
             E                            KE+ L+                    +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 141 ENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKD 200
           E E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL KV  LA+G GT+Y D
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 180

Query: 201 LRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGR------ 231
            R+AMLSKPPYPSYNQFVLAL+ ++Q ++IE EE K S +  + A FTQ GRGR      
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMIENEENKES-INHEQAYFTQRGRGRNRGGRF 240

[Close]

BLAST of Moc07g03620.1 vs. NCBI nr
Match: RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 164.1 bits (414), Expect = 2.6e-36
Identity = 106/250 (42.40%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 17  SSTTMGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHL------- 76
           S  +M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL       
Sbjct: 11  SKASMANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHAS 70

Query: 77  ----------THD------------------GPTVEE----------EEDPEDSGKELSL 136
                     THD                  G   EE            D  +S  E  L
Sbjct: 71  EETMGTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLL 130

Query: 137 IVTKENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGT 196
            +TKE E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL KV  LA+G GT
Sbjct: 131 PMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGT 190

Query: 197 RYKDLRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGR-- 220
           +Y D R+AMLSKPPYPSYNQFVLAL+ ++Q ++ E EE K S +  + A FTQ GRGR  
Sbjct: 191 KYMDFRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKES-INHEQAYFTQRGRGRNQ 250

[Close]

BLAST of Moc07g03620.1 vs. NCBI nr
Match: CAN74381.1 (hypothetical protein VITISV_007944 [Vitis vinifera])

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-35
Identity = 104/246 (42.28%), Postives = 137/246 (55.69%), Query Frame = 0


Query: 21  MGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHL----------- 80
           M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL           
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASXETM 60

Query: 81  ------THD------------------GPTVEE----------EEDPEDSGKELSLIVTK 140
                 THD                  G   EE            D  +S  E  L +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 141 ENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKD 200
           E E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL K   LA+G GT+Y D
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKXFQLAQGLGTKYMD 180

Query: 201 LRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGRGR--NF 220
            R+AMLSKPPYPSYNQFVLAL+ ++Q ++ E EE K S +  + A FTQ GRGR R   F
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKES-INHEQAYFTQRGRGRNRGGRF 240

[Close]

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 120/246 (48.78%), Postives = 147/246 (59.76%), Query Frame = 0


Query: 21  MGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHLTHDGPTVEEEE 80
           M   +  LT+Q FH+C+SLIS+KLN +NYLLWKS VL LI+ LGLE HL  + P V+E +
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 81  DPE---------------------------------------------DSGKELSLIVTK 140
             E                                              S +EL L +TK
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120

Query: 141 ENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKD 200
           ENE+HL E LL LKKG+ S+++ I+KFK +CD+L   KK LDDLTKV HLARG G +YKD
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKD 180

Query: 201 LRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHG--RGRGRNF 220
            R AMLSK PYPSYNQFVLALK +D Q + +EEEE+SSQ+    A F+  G  RGRGR F
Sbjct: 181 FRTAMLSKAPYPSYNQFVLALKAHD-QFLTDEEEERSSQVNLNQAFFSNRGRSRGRGRQF 240

[Close]

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL
Match: A0A438IAM2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3180 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.5e-37
Identity = 104/264 (39.39%), Postives = 142/264 (53.79%), Query Frame = 0


Query: 21  MGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHLTHDGPTVEEEE 80
           M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL+ +    EE  
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60

Query: 81  DPEDS-------------------------GKELSLI--------------------VTK 140
             E                            KE+ L+                    +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 141 ENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKD 200
           E E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL KV  LA+G GT+Y D
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 180

Query: 201 LRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGR------ 231
            R+AMLSKPPYPSYNQFVLAL+ ++Q ++IE EE K S +  + A FTQ GRGR      
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMIENEENKES-INHEQAYFTQRGRGRNRGGRF 240

[Close]

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL
Match: A0A438E6Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1575 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.5e-37
Identity = 106/250 (42.40%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 17  SSTTMGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHL------- 76
           S  +M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL       
Sbjct: 42  SKASMANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHAS 101

Query: 77  ----------THD------------------GPTVEE----------EEDPEDSGKELSL 136
                     THD                  G   EE            D  +S  E  L
Sbjct: 102 KETMGTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLL 161

Query: 137 IVTKENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGT 196
            +TKE E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL KV  LA+G GT
Sbjct: 162 PMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGT 221

Query: 197 RYKDLRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGRGR 220
           +Y D R+AMLSKPPYPSYNQFVLAL+ ++Q ++ E EE K S +  + A FTQ GRGR R
Sbjct: 222 KYMDFRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKES-INHEQAYFTQRGRGRNR 281

[Close]

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL
Match: A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-36
Identity = 106/250 (42.40%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 17  SSTTMGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHL------- 76
           S  +M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL       
Sbjct: 11  SKASMANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHAS 70

Query: 77  ----------THD------------------GPTVEE----------EEDPEDSGKELSL 136
                     THD                  G   EE            D  +S  E  L
Sbjct: 71  EETMGTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLL 130

Query: 137 IVTKENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGT 196
            +TKE E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL KV  LA+G GT
Sbjct: 131 PMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGT 190

Query: 197 RYKDLRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGR-- 220
           +Y D R+AMLSKPPYPSYNQFVLAL+ ++Q ++ E EE K S +  + A FTQ GRGR  
Sbjct: 191 KYMDFRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKES-INHEQAYFTQRGRGRNQ 250

[Close]

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL
Match: A5BC00 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007944 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.1e-36
Identity = 104/246 (42.28%), Postives = 137/246 (55.69%), Query Frame = 0


Query: 21  MGKSKTQLTIQLFHRCASLISIKLNFTNYLLWKSHVLTLIKNLGLEQHL----------- 80
           M   +  L+IQ FH+C+SL+SIKLN +N LLW+S VL L+++LGL  HL           
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASXETM 60

Query: 81  ------THD------------------GPTVEE----------EEDPEDSGKELSLIVTK 140
                 THD                  G   EE            D  +S  E  L +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 141 ENELHLKETLLNLKKGNQSLEDNIKKFKAVCDKLAVTKKRLDDLTKVLHLARGPGTRYKD 200
           E E+ L   L  +KKG +SL++ +++FK +CD LA  +K + DL K   LA+G GT+Y D
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKXFQLAQGLGTKYMD 180

Query: 201 LRIAMLSKPPYPSYNQFVLALKNNDQQLIIEEEEEKSSQLIPKLAIFTQHGRGRGR--NF 220
            R+AMLSKPPYPSYNQFVLAL+ ++Q ++ E EE K S +  + A FTQ GRGR R   F
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKES-INHEQAYFTQRGRGRNRGGRF 240

The following BLAST results are available for this feature:

BLAST of Moc07g03620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	7.2e-47	48.78	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
RVW43526.1	2.0e-36	42.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW93768.1	2.0e-36	39.39	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW19921.1	2.6e-36	42.40	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN74381.1	1.7e-35	42.28	hypothetical protein VITISV_007944 [Vitis vinifera]	[more]

BLAST of Moc07g03620.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	3.5e-47	48.78	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A438IAM2	9.5e-37	39.39	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E6Z5	9.5e-37	42.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438C9J9	1.2e-36	42.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5BC00	8.1e-36	42.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007944 PE=4 SV=1	[more]

BLAST of Moc07g03620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..398
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..398
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 34..224

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc07g03620	Moc07g03620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc07g03620.1.exon1	Moc07g03620.1.exon1	exon
Moc07g03620.1.exon2	Moc07g03620.1.exon2	exon
Moc07g03620.1.exon3	Moc07g03620.1.exon3	exon
Moc07g03620.1.exon4	Moc07g03620.1.exon4	exon
Moc07g03620.1.exon5	Moc07g03620.1.exon5	exon
Moc07g03620.1.exon6	Moc07g03620.1.exon6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc07g03620.1	cds.Moc07g03620.1	CDS
cds.Moc07g03620.1	cds.Moc07g03620.1_2	CDS
cds.Moc07g03620.1	cds.Moc07g03620.1_3	CDS
cds.Moc07g03620.1	cds.Moc07g03620.1_4	CDS
cds.Moc07g03620.1	cds.Moc07g03620.1_5	CDS
cds.Moc07g03620.1	cds.Moc07g03620.1_6	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc07g03620.1	Moc07g03620.1-protein	polypeptide