Moc07g01940.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g01940.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr7: 1491602 .. 1494760 (-)
Sequence length1335
RNA-Seq ExpressionMoc07g01940.1
SyntenyMoc07g01940.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACTCGATCCAAAAATGGGATCCGATCCAATATTGAGCTACTCATCTCATTGTCAATTGATTTTGAGATGGAACCCATAGTATGGTTTGTGTTATTGATCTTTTATATCTTATAAATATTTCAGAAAGAATAATATCTATTTAATATGATTAAATTTTGATTTGAAGATCCTTTGTTCTCGATGTTATCAGTTGGTTAATTGTGTGCTGTTGATGCATAAAATGTCGAGGCCAATCGAACCGGGTGATTCGAATTTGACCCGATGGGTTGTTAATAGGGGGAAGACGAATTCTTGACTCGAATGGTTGGATCGAAGATGATCTGCACAAAGAAAATGTGAGCTAATGCCGGCGAGGTGCTGACATACACTCTGATGCTTAAGTACTTGATAACAAGAAAGAAAGAGAATTGCGTAGAAGTGTAGTGAGTTGTCGTTGAACCTCAATTTGACTGGGATCTTCGTCTTTATAGGCTCATGGAGGGAGGAAGAAGATGTATTTCCTTCCAAGTAATATGGCCGGGCTAAGATGCCTACGGTGGAGGCGTGCGCACGACACTAGGTATGGCACGAAGGTGTGTAGAGTAGTAGGCCGCCATGGTGGCGTGCGCTTCATGCTCTAGCAAAGGTGGCTGTGGTGACCACAAAGGAGAAGGGGGCACCACGACCGCTTGGGTAGCGCTCGCTTTGCTCGGGAAGGATTGCACGAAGGTCGTGCTTCTCGCATTGAAAAAGGTGCACTGCGGACAATTGGGGTGCACTCGTTTGGTGCTGAGAAGGATTGTACGGCCTTGGTGGTGGCACGTGCTAGGCGTGTGAGTATTGGGCTGATGGGCCGCTGTGGCGGTGTGTTTGCCACGCTGGGAGTGCATGGAATGGGTCGATGGACCGTGGTGGTACCTGCCCGTGTAAGACTTTTTCATAACATCCTAACAGTGGCCCCCCATTTCTGATCTGAAAGCTTTAGCACTTTTGTTCAGGAGTGTACTTAGAGAAAGAAATGAGTGGGGGCGGGCATGGTGGCTGTACAATTTTTCTTTTTTTTTAATGCCACGTTTCAACCATGTAGGGGGTGGTAAAATTTAAATTTCAAAACCCATCATTGAGCTTTGATTTTCCACCCTCCTTTAATTACCTCTGATTTGACCTCCTTTAATTACCTTTGATTGAAAACGTGTTTTCCTCCTCCCACTCTCTTTTTCTTCTTCTTCTTTTATTTTATTTTATTTTATTTTTTATTTTAAATTTTTACCTGCACCTTCATCCTTCTTCTTCGTTTAGTTTTTACATTTTGTTCTCCTTCCCTCTCCCCTTTTTTTTCTTATTGCTACTTCTGTTTTGCATCTTTGACATTATTATTGGACACTCAGATTTCAAAGGTATTTTTACATATTTCCTCATCTTCGCCTTTGCTTTCGCTCATTATTCTAGTAAGTTATTGACGTTCTTTTTCTTTTTCTTTCCCATCCCTTTATTTTGAGTTTTTAATTTGTTTTCGCGGACATGTCGAGCTCCGACAACACTTAACGGTTGAGTCCCTTAGATTCGTTTATGGAGACATGGGTGGCTTCAAATGGTTCTGAACAAGCCTCTGCATTGCGTTCTTCCCCGAAGGCGAGCACCTTGGGTAGGTCAGAAAGGGTGCAGCACGCTACCCCACTCGAATGATTTTTCCAGATGACGAGGGTGTACAGTCCTCCATTACTCGGAAAGACCTTGCTGTACTTCGAGATATGTATGAGATTCCTTCTACTATACATCTTCAAGTGCCTAACAAAGGGGAATGAATGACATGTCCGCCACGAGGGGAAGTAGCATTTTACAAAAAAAAATGTTCGATTGTGGTGTAAGACTACCTTTACCTTTACCTTCCTTTATTCAGTGTTTCTTAAGTTCTTTCCATCTGGCCCTGGCACAACTGGTGTCAAATGGATGAGCCACCCTTCTTGGATGTTACGTGGCATGGAGGCAAGTGGGCGGGGGTTCCGTGCTTCACCCGGGGGTTATCGCCAATTTTTTTGAACTAAAAGCTACTCTACTAAGAAAGAATTTGTTTTTCTACATGTCGAAACATGATGGGGCGTAGTCAACCGAACCTGTGGATAGTGTTTTAAACGTGGCTGCACTGGATATCTCAGCACGGCCGCGACGGTTGCCCTAACACCTTCATCCGAATCAGGCAGGGCAACTGTAGCATCCGCATTACCCAGCAGCAGTGCGTCTGGCGTGAGTGCGGTGGTTTTTGACCAATCTGACCAGGAAAGAAGGGTGAGCTCTAGAAGCGCTCGTGAGATTCCATCGACCCAATGTCCTAGCTCGAAGAGATGGAAGGATAAATGGTTTTTTGTCCGTGGTGACTATTTGGCCCCAGTGTCAGCTGATTGCTGTTCATTTGTTTTCCCGATCGAGTTCGGACAATCGGGTCAGTGATTCTTTACTGTTCCAATTTGTTAGCTCGACCGATTATTGTTATTACTATATATATATTATATATATATATATATATATATTATATATATATATATATCTACTTTATTTTTTTTGTGGGTAATGAGGGTTCAGTCGACCTTGGGTGATGATGATGAGTTATTAAGGAACACGTTAGAGTTGCTGTCCGTAAATGATTCAGGCGACGTTTCTTTGATCGTGGAGTGATATTTGAGACTGTACTGACTATCCCATCTTAGCTATCCTATTCTAGACTCAGAGGCGAGGAAACTCGTGGGCGAAAGGATTAGTTGTGAGGACCTAATTCGTTTAGGTATAACATTTTTGCTTCCCTATTTGGCTTTATCGCCCCAGTTGTGCATTTGGTGTAATCGTTTCTTTTTTTTTTTTTTTGCGTGTGCATACTCTGAAGTCATGCCACCCACCACCTCTTTTGTTGATTGCCTTGTTGCCCAAGCAGCGAAGCGAGTGACTTCTCAGGCTACTGACCAAGGCGGCTCCTTTAGGGCACAGGAGGTACCTCCTCGCCAACGTCGTCGTATCGGAGGCTCCTCCCAAGGAGAAATTGTGTCGGCAACTTCACTTCGGCCTCCTCCTCCTATTAGCCTGCCACGACCCTCGGCAACGTCCCTAGTAGGGGCGTCGCCCAGTACTATTCACCGATGGATATCCCCTTTCCTACGTACGGATTCCGTGGACCATATATGA

mRNA sequence

ATGAGCACTCGATCCAAAAATGGGATCCGATCCAATATTGAGCTACTCATCTCATTGTCAATTGATTTTGAGATGGAACCCATAGCTCATGGAGGGAGGAAGAAGATGTATTTCCTTCCAAGTAATATGGCCGGGCTAAGATGCCTACGGTGGAGGCGTGCGCACGACACTAGGAGAAGGGGGCACCACGACCGCTTGGGTAGCGCTCGCTTTGCTCGGGAAGGATTGCACGAAGGTCGTGCTTCTCGCATTGAAAAAGGTGCACTGCGGACAATTGGGGTGCACTCGTTTGGTGCTGAGAAGGATTGTACGGCCTTGGTGGTGGCACGTGCTAGGCGTGTGAGTATTGGGCTGATGGGCCGCTGTGGCGGTGTGTTTGCCACGCTGGGAGTGCATGGAATGGGTCGATGGACCGTGGTGGTACCTGCCCGTATTTCAAAGGTATTTTTACATATTTCCTCATCTTCGCCTTTGCTTTCGCTCATTATTCTAGTCAGAAAGGGTGCAGCACGCTACCCCACTCGAATGATTTTTCCAGATGACGAGGGTGTACAGTCCTCCATTACTCGGAAAGACCTTGCTGTACTTCGAGATATCACGGCCGCGACGGTTGCCCTAACACCTTCATCCGAATCAGGCAGGGCAACTGTAGCATCCGCATTACCCAGCAGCAGTGCGTCTGGCGTGAGTGCGGTGGTTTTTGACCAATCTGACCAGGAAAGAAGGGTGAGCTCTAGAAGCGCTCGTGAGATTCCATCGACCCAATGTCCTAGCTCGAAGAGATGGAAGGATAAATGGTTTTTTGTCCGTGGTGACTATTTGGCCCCAGTGTCAGCTGATTGCTGTTCATTTGTTTTCCCGATCGAGTTCGGACAATCGGACTCAGAGGCGAGGAAACTCGTGGGCGAAAGGATTAGTTGTGAGGACCTAATTCGTTTAGGTATAACATTTTTGCTTCCCTATTTGGCTTTATCGCCCCAGTTGTGCATTTGGTGTAATCGTTTCTTTTTTTTTTTTTTTGCGTGTGCATACTCTGAAGTCATGCCACCCACCACCTCTTTTGTTGATTGCCTTGTTGCCCAAGCAGCGAAGCGAGTGACTTCTCAGGCTACTGACCAAGGCGGCTCCTTTAGGGCACAGGAGGTACCTCCTCGCCAACGTCGTCGTATCGGAGGCTCCTCCCAAGGAGAAATTGTGTCGGCAACTTCACTTCGGCCTCCTCCTCCTATTAGCCTGCCACGACCCTCGGCAACGTCCCTAGTAGGGGCGTCGCCCAGTACTATTCACCGATGGATATCCCCTTTCCTACGTACGGATTCCGTGGACCATATATGA

Coding sequence (CDS)

ATGAGCACTCGATCCAAAAATGGGATCCGATCCAATATTGAGCTACTCATCTCATTGTCAATTGATTTTGAGATGGAACCCATAGCTCATGGAGGGAGGAAGAAGATGTATTTCCTTCCAAGTAATATGGCCGGGCTAAGATGCCTACGGTGGAGGCGTGCGCACGACACTAGGAGAAGGGGGCACCACGACCGCTTGGGTAGCGCTCGCTTTGCTCGGGAAGGATTGCACGAAGGTCGTGCTTCTCGCATTGAAAAAGGTGCACTGCGGACAATTGGGGTGCACTCGTTTGGTGCTGAGAAGGATTGTACGGCCTTGGTGGTGGCACGTGCTAGGCGTGTGAGTATTGGGCTGATGGGCCGCTGTGGCGGTGTGTTTGCCACGCTGGGAGTGCATGGAATGGGTCGATGGACCGTGGTGGTACCTGCCCGTATTTCAAAGGTATTTTTACATATTTCCTCATCTTCGCCTTTGCTTTCGCTCATTATTCTAGTCAGAAAGGGTGCAGCACGCTACCCCACTCGAATGATTTTTCCAGATGACGAGGGTGTACAGTCCTCCATTACTCGGAAAGACCTTGCTGTACTTCGAGATATCACGGCCGCGACGGTTGCCCTAACACCTTCATCCGAATCAGGCAGGGCAACTGTAGCATCCGCATTACCCAGCAGCAGTGCGTCTGGCGTGAGTGCGGTGGTTTTTGACCAATCTGACCAGGAAAGAAGGGTGAGCTCTAGAAGCGCTCGTGAGATTCCATCGACCCAATGTCCTAGCTCGAAGAGATGGAAGGATAAATGGTTTTTTGTCCGTGGTGACTATTTGGCCCCAGTGTCAGCTGATTGCTGTTCATTTGTTTTCCCGATCGAGTTCGGACAATCGGACTCAGAGGCGAGGAAACTCGTGGGCGAAAGGATTAGTTGTGAGGACCTAATTCGTTTAGGTATAACATTTTTGCTTCCCTATTTGGCTTTATCGCCCCAGTTGTGCATTTGGTGTAATCGTTTCTTTTTTTTTTTTTTTGCGTGTGCATACTCTGAAGTCATGCCACCCACCACCTCTTTTGTTGATTGCCTTGTTGCCCAAGCAGCGAAGCGAGTGACTTCTCAGGCTACTGACCAAGGCGGCTCCTTTAGGGCACAGGAGGTACCTCCTCGCCAACGTCGTCGTATCGGAGGCTCCTCCCAAGGAGAAATTGTGTCGGCAACTTCACTTCGGCCTCCTCCTCCTATTAGCCTGCCACGACCCTCGGCAACGTCCCTAGTAGGGGCGTCGCCCAGTACTATTCACCGATGGATATCCCCTTTCCTACGTACGGATTCCGTGGACCATATATGA

Protein sequence

MSTRSKNGIRSNIELLISLSIDFEMEPIAHGGRKKMYFLPSNMAGLRCLRWRRAHDTRRRGHHDRLGSARFAREGLHEGRASRIEKGALRTIGVHSFGAEKDCTALVVARARRVSIGLMGRCGGVFATLGVHGMGRWTVVVPARISKVFLHISSSSPLLSLIILVRKGAARYPTRMIFPDDEGVQSSITRKDLAVLRDITAATVALTPSSESGRATVASALPSSSASGVSAVVFDQSDQERRVSSRSAREIPSTQCPSSKRWKDKWFFVRGDYLAPVSADCCSFVFPIEFGQSDSEARKLVGERISCEDLIRLGITFLLPYLALSPQLCIWCNRFFFFFFACAYSEVMPPTTSFVDCLVAQAAKRVTSQATDQGGSFRAQEVPPRQRRRIGGSSQGEIVSATSLRPPPPISLPRPSATSLVGASPSTIHRWISPFLRTDSVDHI
Homology
[Close]
BLAST of Moc07g01940.1 vs. NCBI nr
Match: XP_022140214.1 (uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140215.1 uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140216.1 uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140217.1 uncharacterized protein LOC111010939 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-06
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 350 PTTSFVDCLVAQAAKRVTSQATDQGGSFRAQEVPPRQRRRIGGSSQGEI------VSATS 409
           P+TSF+D L AQAAKR TS   +Q G     ++PP QRRR G SSQ  +       +  +
Sbjct: 2   PSTSFIDRLRAQAAKRATSHCAEQDGCSGTADLPPHQRRRTGDSSQEYLPLPFDPQAFPA 61

Query: 410 LRPPP--PISLPRPSATSLVGASPSTIHRW 432
           +RPPP    S  RPS   L GASP+T  R+
Sbjct: 62  VRPPPLSTSSQSRPSMVPLAGASPNTPRRY 91

[Close]
BLAST of Moc07g01940.1 vs. ExPASy TrEMBL
Match: A0A6J1CEH1 (uncharacterized protein LOC111010939 OS=Momordica charantia OX=3673 GN=LOC111010939 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-06
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 350 PTTSFVDCLVAQAAKRVTSQATDQGGSFRAQEVPPRQRRRIGGSSQGEI------VSATS 409
           P+TSF+D L AQAAKR TS   +Q G     ++PP QRRR G SSQ  +       +  +
Sbjct: 2   PSTSFIDRLRAQAAKRATSHCAEQDGCSGTADLPPHQRRRTGDSSQEYLPLPFDPQAFPA 61

Query: 410 LRPPP--PISLPRPSATSLVGASPSTIHRW 432
           +RPPP    S  RPS   L GASP+T  R+
Sbjct: 62  VRPPPLSTSSQSRPSMVPLAGASPNTPRRY 91

The following BLAST results are available for this feature:
BLAST of Moc07g01940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140214.16.7e-0645.56uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140215.1 uncha... [more]
BLAST of Moc07g01940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g01940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CEH13.2e-0645.56uncharacterized protein LOC111010939 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
BLAST of Moc07g01940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..410

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc07g01940Moc07g01940gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc07g01940.1.exon7Moc07g01940.1.exon7exon
Moc07g01940.1.exon6Moc07g01940.1.exon6exon
Moc07g01940.1.exon5Moc07g01940.1.exon5exon
Moc07g01940.1.exon4Moc07g01940.1.exon4exon
Moc07g01940.1.exon3Moc07g01940.1.exon3exon
Moc07g01940.1.exon2Moc07g01940.1.exon2exon
Moc07g01940.1.exon1Moc07g01940.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc07g01940.1cds.Moc07g01940.1_7CDS
cds.Moc07g01940.1cds.Moc07g01940.1_6CDS
cds.Moc07g01940.1cds.Moc07g01940.1_5CDS
cds.Moc07g01940.1cds.Moc07g01940.1_4CDS
cds.Moc07g01940.1cds.Moc07g01940.1_3CDS
cds.Moc07g01940.1cds.Moc07g01940.1_2CDS
cds.Moc07g01940.1cds.Moc07g01940.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc07g01940.1Moc07g01940.1-proteinpolypeptide