Moc07g01520.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g01520.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 1240567 .. 1242679 (+)
Sequence length	501
RNA-Seq Expression	Moc07g01520.1
Synteny	Moc07g01520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGTTGATTCCAAGCCTCTGTCATGGATGGATCCAATCAGGAACTTCTTAGAAGGCAATATCCCAATAAACCCGAAGGAAGCCAAAAAGATGAGAAGAAAAACAGCTCGGTACTTGCTCCGAGATGAAACAATGTACCAGCGTGGGTTCTCCTTACCCCTCCTTAAGTGCATTTCAAAAGAAGATGAAAGTTATGTTCTTAAGGAAGTGCATGAAGGGGTTTGTGGTAACCATTTGGGGGCCAGGTCATTATCGACGAAGGTCATTCGTCAGGGTTACTACTGGCCCACGGTTGATCAAGACGCAAAGGAATTCGTGAAAGCGTGCGATAACTGCCAACGGTTTGCGAATATCATCCATCAGCCTCCCGAGCTGCTGACTCCGATCTCAACACCATGGCCCTTTGCACAATGGGGAGTCGATCTAATCGGACCTTTCCCATTGGGCAAAGGGCAGACCAAGTATGTCGTGGTTGTTGTGGATTATTTACCACGTGGGCCGAGGCCGAGGCGCTCTCTACAATCACAGAAGCCAGGGTCACGACCTTCATTCGGACAAACATTGTCCACAGAAACGCAAAGTTCGACAATGCCATTATAACGGACAATGGCAAGCAGTTCGACAACGCAAAGTTCAAGGACTTCTGCCGTAAGCTCGAAATCAGTCACCCCTGCTCGTCCCCAGCTCACACCAAAGCCAACGGACAAGTAGAGGTAGTCAACAAGATCATTAAGCGCGGTCTTAAGCTACGGCTGGATGCAAGGAGAGGCAGGTGGGTCGAGGAGCTGCCTGAGGTGATCTGGTCATATCGGACTACGCCCCGATAGTCCACTGGCGAAACTCCCTTCACTATGGCCTTCGACTCCGAGGCCGTGGTGCCTGTAGAAATTCGGTTACTAACCGAGAAGATAGACTACTACGAGCATGCAAGGAACGAGGAAGAGCTACTCCTCAACCTCGACCTCCTTGATGAGAAAAGAGAAGCGGCCCAACTACGCCTGGCAGAGTACCAAAGACGAATGTCAAGGCATTACAACTCGAGAGTCTGGCCTCGGAGTTTCCAGATCGGAAACCTGGTCCTCCGTAAGGTGCAGAAGCATGTGGATACGCTAGAGCCGAGTTGGGAGGGGCTATTTGAAGTCAAAGGCATAGTACGACCTGAAACATACATGCTGGCCGATCTTGAAGGAAAGTTACTCCCGCATCCATGGAACGCAGAGCATCTGAAGCGATATTACCCTTGAAATGTGGAAATGGTCCAAAAGTAAACGGGACTTGTAAAGATTTTCAAGGGTTAGCCCCACTAAAGGGCTTCGTGTTGTTTAATTCCATGTCTCCTAAGGGTCTGAGTTCGACGTAAAATTAAATGGGGGCCGGCTGAGGATTAAAACTTGGAAAAATTAAAGCCTCTAGAACTTACGAGTTCGAACTAAGATGTGAACTAAAACTTAGAAAAATTTAACGCTTTATAAATTACAAGTTCAAGACACGATGAAGCGAACTTAGAAAGAACTAAAAAGGAAACAGTATATGCATACTTAAAAGTTTGGGCCGAGGCGTATAGACCTCGAGACCCAGTACAGATGATCAAAAAGTGAAAATATGATAAGAAAGTCGAAAGAGTTGGAGAAGCCACAACTACTTCCAAGGTGCGACCTGAACTCGCCTTGAGACCCTAGGATGTCGACCTCCTCAGAGTCTATCATCCTAACCTCTTGGGAGGAGTTCACGCCAGCAGCTGCAAGGGGGCCCCATCAGCCTCTTGGGAAGAAGACCCTGTGTCCTCCCCCTTGTTAAGCTTGGTGTCAGATTCGAGCTTCTTCAGGCATTGCTCCATAAAGTTCTTGGGAGTAGGAGTCCTGTTTGGACCCGAGGCCCACTTCTGGGCATACCTGAGTTTGATAGGTGCAAGGTTGATCTCGGGAGCTACCTCCTTGACCCCTTCATCAGGAACCAGAAGCCAGCATCGTTGAAGTCTTTAGCGAACTCGTCGAAGTCAGGGTGCTGGCGAAAGGCTTCTTCCAGAAGAATCCTGTTGCTGAGTTTGGACTTCGCCAGCTCAAGCTTGCCCTTCAGCTCTGCCGTCCTCGGAGTCACAGACTTTTAG

mRNA sequence

ATGATGGAAGTTGATTCCAAGCCTCTGTCATGGATGGATCCAATCAGGAACTTCTTAGAAGGCAATATCCCAATAAACCCGAAGGAAGCCAAAAAGATGAGAAGAAAAACAGCTCGGAGTTCACGCCAGCAGCTGCAAGGGGGCCCCATCAGCCTCTTGGGAAGAAGACCCTGTGTCCTCCCCCTTGTTAAGCTTGGTGTCAGATTCGAGCTTCTTCAGGCATTGCTCCATAAAGTTCTTGGGAGTAGGAGTCCTGTTTGGACCCGAGGCCCACTTCTGGGCATACCTGAGTTTGATAGGTGCAAGGTTGATCTCGGGAGCTACCTCCTTGACCCCTTCATCAGGAACCAGAAGCCAGCATCGTTGAAGTCTTTAGCGAACTCGTCGAAGTCAGGGTGCTGGCGAAAGGCTTCTTCCAGAAGAATCCTGTTGCTGAGTTTGGACTTCGCCAGCTCAAGCTTGCCCTTCAGCTCTGCCGTCCTCGGAGTCACAGACTTTTAG

Coding sequence (CDS)

ATGATGGAAGTTGATTCCAAGCCTCTGTCATGGATGGATCCAATCAGGAACTTCTTAGAAGGCAATATCCCAATAAACCCGAAGGAAGCCAAAAAGATGAGAAGAAAAACAGCTCGGAGTTCACGCCAGCAGCTGCAAGGGGGCCCCATCAGCCTCTTGGGAAGAAGACCCTGTGTCCTCCCCCTTGTTAAGCTTGGTGTCAGATTCGAGCTTCTTCAGGCATTGCTCCATAAAGTTCTTGGGAGTAGGAGTCCTGTTTGGACCCGAGGCCCACTTCTGGGCATACCTGAGTTTGATAGGTGCAAGGTTGATCTCGGGAGCTACCTCCTTGACCCCTTCATCAGGAACCAGAAGCCAGCATCGTTGAAGTCTTTAGCGAACTCGTCGAAGTCAGGGTGCTGGCGAAAGGCTTCTTCCAGAAGAATCCTGTTGCTGAGTTTGGACTTCGCCAGCTCAAGCTTGCCCTTCAGCTCTGCCGTCCTCGGAGTCACAGACTTTTAG

Protein sequence

MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARSSRQQLQGGPISLLGRRPCVLPLVKLGVRFELLQALLHKVLGSRSPVWTRGPLLGIPEFDRCKVDLGSYLLDPFIRNQKPASLKSLANSSKSGCWRKASSRRILLLSLDFASSSLPFSSAVLGVTDF

Homology

[Close]

BLAST of Moc07g01520.1 vs. NCBI nr
Match: XP_022157626.1 (uncharacterized protein LOC111024288 [Momordica charantia])

HSP 1 Score: 238.0 bits (606), Expect = 5.7e-59
Identity = 147/254 (57.87%), Postives = 150/254 (59.06%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTA----RSSRQQLQGGPISL---- 60
           MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTA    R      +G  + L    
Sbjct: 250 MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARYLLRDETMYQRGFSLPLLKCI 309

Query: 61  --------------------LGRR-------------PCV-------------------- 120
                               LG R             P V                    
Sbjct: 310 SKEDESYVLKEVHEGVCGNHLGARSLSTKVIRQGYYWPTVDQDAKEFVKACDNCQRFANI 369

Query: 121 ---------------------------LPLVKLGVRFELLQALLHKVLGSRSPVWTRGPL 167
                                       PL K   +FELLQALLHKVLGSRSPVWTRGPL
Sbjct: 370 IHQPPELLTPISTPWPFAQWGVDLIGPFPLGKGQTKFELLQALLHKVLGSRSPVWTRGPL 429

[Close]

BLAST of Moc07g01520.1 vs. NCBI nr
Match: XP_022142775.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-07
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTAR 40
           MMEVDS+P SWMD IRNFLEGNI ++P+EAKKM RK AR
Sbjct: 64  MMEVDSQPPSWMDSIRNFLEGNILVDPREAKKMTRKAAR 102

[Close]

BLAST of Moc07g01520.1 vs. NCBI nr
Match: XP_022150033.1 (uncharacterized protein LOC111018305 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-06
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTAR 40
           MMEVDS+P SWMD IRN LEGNIPI+ +EAKKM RK AR
Sbjct: 240 MMEVDSQPPSWMDSIRNILEGNIPIDLREAKKMTRKAAR 278

[Close]

BLAST of Moc07g01520.1 vs. NCBI nr
Match: XP_022156791.1 (uncharacterized protein LOC111023625 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-05
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARSSRQQLQGGPISLLGRRPCVL 60
           MME+DS P SWM+PI++FL G +P +P+E KKM RK A   R  L+ G    L RR   L
Sbjct: 250 MMEIDSHPSSWMEPIKDFLGGKVPADPRETKKMTRKAA---RYLLRDG---TLYRRGFSL 307

Query: 61  PLVK 65
           PL+K
Sbjct: 310 PLLK 307

[Close]

BLAST of Moc07g01520.1 vs. NCBI nr
Match: XP_022143565.1 (uncharacterized protein LOC111013434 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-05
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARSSRQQLQGGPISLLGRRPCVL 60
           MME+DS P SWM+PI++FL G +P +P+E KKM RK A   R  L+ G    L RR   L
Sbjct: 149 MMEIDSHPPSWMEPIKDFLGGKVPADPRETKKMTRKAA---RYLLRDG---TLYRRGFCL 206

Query: 61  PLVK 65
           PL+K
Sbjct: 209 PLLK 206

[Close]

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL
Match: A0A6J1DYR5 (uncharacterized protein LOC111024288 OS=Momordica charantia OX=3673 GN=LOC111024288 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.8e-59
Identity = 147/254 (57.87%), Postives = 150/254 (59.06%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTA----RSSRQQLQGGPISL---- 60
           MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTA    R      +G  + L    
Sbjct: 250 MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARYLLRDETMYQRGFSLPLLKCI 309

Query: 61  --------------------LGRR-------------PCV-------------------- 120
                               LG R             P V                    
Sbjct: 310 SKEDESYVLKEVHEGVCGNHLGARSLSTKVIRQGYYWPTVDQDAKEFVKACDNCQRFANI 369

Query: 121 ---------------------------LPLVKLGVRFELLQALLHKVLGSRSPVWTRGPL 167
                                       PL K   +FELLQALLHKVLGSRSPVWTRGPL
Sbjct: 370 IHQPPELLTPISTPWPFAQWGVDLIGPFPLGKGQTKFELLQALLHKVLGSRSPVWTRGPL 429

[Close]

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL
Match: A0A6J1CLW5 (protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-07
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTAR 40
           MMEVDS+P SWMD IRNFLEGNI ++P+EAKKM RK AR
Sbjct: 64  MMEVDSQPPSWMDSIRNFLEGNILVDPREAKKMTRKAAR 102

[Close]

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL
Match: A0A6J1D8D3 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018305 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTAR 40
           MMEVDS+P SWMD IRN LEGNIPI+ +EAKKM RK AR
Sbjct: 240 MMEVDSQPPSWMDSIRNILEGNIPIDLREAKKMTRKAAR 278

[Close]

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL
Match: A0A6J1CP53 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARSSRQQLQGGPISLLGRRPCVL 60
           MME+DS P SWM+PI++FL G +P +P+E KKM RK A   R  L+ G    L RR   L
Sbjct: 149 MMEIDSHPPSWMEPIKDFLGGKVPADPRETKKMTRKAA---RYLLRDG---TLYRRGFCL 206

Query: 61  PLVK 65
           PL+K
Sbjct: 209 PLLK 206

[Close]

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL
Match: A0A6J1DW17 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023625 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1   MMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARSSRQQLQGGPISLLGRRPCVL 60
           MME+DS P SWM+PI++FL G +P +P+E KKM RK A   R  L+ G    L RR   L
Sbjct: 250 MMEIDSHPSSWMEPIKDFLGGKVPADPRETKKMTRKAA---RYLLRDG---TLYRRGFSL 307

Query: 61  PLVK 65
           PL+K
Sbjct: 310 PLLK 307

The following BLAST results are available for this feature:

BLAST of Moc07g01520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157626.1	5.7e-59	57.87	uncharacterized protein LOC111024288 [Momordica charantia]	[more]
XP_022142775.1	6.6e-07	76.92	protein NYNRIN-like [Momordica charantia]	[more]
XP_022150033.1	2.5e-06	76.92	uncharacterized protein LOC111018305 [Momordica charantia]	[more]
XP_022156791.1	4.7e-05	51.56	uncharacterized protein LOC111023625 [Momordica charantia]	[more]
XP_022143565.1	4.7e-05	51.56	uncharacterized protein LOC111013434 [Momordica charantia]	[more]

BLAST of Moc07g01520.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYR5	2.8e-59	57.87	uncharacterized protein LOC111024288 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1CLW5	3.2e-07	76.92	protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1	[more]
A0A6J1D8D3	1.2e-06	76.92	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018305 PE=4 SV=1	[more]
A0A6J1CP53	2.3e-05	51.56	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1	[more]
A0A6J1DW17	2.3e-05	51.56	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023625 PE=4 SV=1	[more]

BLAST of Moc07g01520.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc07g01520	Moc07g01520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc07g01520.1.exon1	Moc07g01520.1.exon1	exon
Moc07g01520.1.exon2	Moc07g01520.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc07g01520.1	cds.Moc07g01520.1	CDS
cds.Moc07g01520.1	cds.Moc07g01520.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc07g01520.1	Moc07g01520.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity