Moc07g00560.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g00560.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr7: 337982 .. 340133 (+)
Sequence length459
RNA-Seq ExpressionMoc07g00560.1
SyntenyMoc07g00560.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCAAAGCCCAGGCTGATTCTCTTACTTGTGGGAAAGTGGAATGTGTATTCAATGAAATAAAAATTGCAAGGGTCAGCTTAGATATTTACTATTTAGCTATTAGAATTGCATTATAAATTAAGGCATAAGCTATACCATTCTACAAGTCTTGACATAGTGACTAAGAGGTTTAATTAAATATTTTTTATTTAATTGATTTACCCTGTTAAAAGTGTCAAATTTATATGCTAAAAAAGAAATTTTGTAGTCTTAATTTTACTCTTCATGTGTGGATTCTATCTTTCTAATAATATGTTGGAGTCATTTGTTTGGTCATAGTTATGATGCAAAATGTGTTATTTGGCTGTTAGGTTCATGTTTAGTTGACTTGTATAAATTATACTTATCAAATACATCCTTCTATAGATGGTTCATTCTAGAGTCATTGCATTTTCTCTACCTTTTTCTATTTTGTTGAATTTCTGTATAACGCATTCTAAATGTGTATTTCTTTTCACCAGAACGAGGCTGTTCTGAGGGCATGTTCTGAGCCACCTCCTCCTAAATCTTCAGGAGGTATCAGCAAAGACAGCACAAGTAGCCAAGTTGGAGAAAATAAGTAAGAACACCATAGGGATCCGAAAGATTGGCGACTCTGGCATTGCAGTGACAAATTTTCCCATTTTTTTGGGCCTTCTTCTAGAAGGGAAGAGTAAACATTAAGTAGATAGAAGTGTTCAAAAGTTTCCATCCTTGATGACAATACACTAGTGTGGATTACTGACCTTGAGATTCACATCATTTTTGTTTGTTTTTGTCATTTGATCTAACATGATTAGTTTTTCATAGTCCTTAGCTCCCTCTTGTATGTTATTTGATCTAATTTGCTTTCTGAGCAAACTCACTCTTGAAATTTGGTGCTGAAAATATCTGAACGGGTAAAGGCAAGCCTTACAAGAGAAAGTTCATAATCTGTAGTAGTGTTCCTGTATTGTATTTTTAACTGGTCACAACACTTAAAAACATGAGATGGATTTGGTATGATCAGAATTCTTCTTGTTGGAAGGTTGAAGGAACTATATGTGAACCTTTGTTGGAATGGTTACTCCTTTATGTTGGATTGGCAGAAAATATGAATATGGTATGTATTGTGTTATCCAAATTCATATCAGGGAAAAGAAGTCGGATGAAAACGAGAACCGAAATTATTTAATCGAGTTGAAAAATTCGAGTTATTGTATTGAGTGGGACTGATCTGCTCTTTGCATACAGCTCTGATTTATTCAGTAGAAATTTCTGCAGATATTTTCCTTGGTTAGTCTGTTTGTTTTCAGACCTCAACATTATACCTTCACTTGTTGCAAAAGGCGAGCGCAGTTTCTAAATTTTCTGGACAAACTTGTTTGTACAGTTCAAAACTTAAATGCTCAACTTGTATCATAAGCTAAGATAGCGCTCCCAATGGTAAAATAGGGTATGGGTAGGGTTGCCCTCCATCATCATGGAGAGATCTCTCTTCATTCACTTTGTGTATTAGGCTGAGCTATCCAGACCCCAAGTCTAAGAGAATTTATTAGAGAAGGTTGTAACAATGTAGCTGGTAGAACATGTATCCAACAGTTTTGGGGAAGCGTGTAGATTTCGAATCTGCATTCAACGATTATTAGAGCAAGTCTCACCCTGGTTGCCACGTTTAACAATTTTTCCTCTTTTGCAGCAATCGCTTTCGGTTCCATAACTGCTGGGAGTGAGAAGTGGGCATTTTGTGCAGGTATTACCTTTCATCTCTGCCATGTTCTCATATAACTCGAATATTGCAATATTTCTTGAAAGTTGTTGGCAGAAAGAAAGGTCTAAGAATGTCAGGAATTTACTAACCATTGAAATGGAGAAGTATGAGACATGGAAGGAATCCTTATTGTTCCAGTGGAGACCCCACCCATGAGAATTTTCTTTATTATTATTATTTGCATAAGATGATTTTGTTTAGCAGAGAATGAGGAACAGATAGATGTCTCTGTTGCAGGGATGCAAAGCAACCTCTGTTATTTAATGTTTGTCCAAAACAAACAGCTTGTAACAGTGGTTGCCTCAAGAACTGGTCAACTTACATCACATTATTCACCAAAGAAAATTCCTTCTTTGATAGGTCATTCTTCTTCATAA

mRNA sequence

ATGGAATTCAAAGCCCAGGCTGATTCTCTTACTTGTGGGAAAGTGGAATGTGTATTCAATGAAATAAAAATTGCAAGGAACGAGGCTGTTCTGAGGGCATGTTCTGAGCCACCTCCTCCTAAATCTTCAGGAGGTATCAGCAAAGACAGCACAAGTAGCCAAGTTGGAGAAAATAAAAAATATGAATATGCTCTGATTTATTCAGTAGAAATTTCTGCAGATATTTTCCTTGCAATCGCTTTCGGTTCCATAACTGCTGGGAGTGAGAAGTGGGCATTTTGTGCAGAGAATGAGGAACAGATAGATGTCTCTGTTGCAGGGATGCAAAGCAACCTCTGTTATTTAATGTTTGTCCAAAACAAACAGCTTGTAACAGTGGTTGCCTCAAGAACTGGTCAACTTACATCACATTATTCACCAAAGAAAATTCCTTCTTTGATAGGTCATTCTTCTTCATAA

Coding sequence (CDS)

ATGGAATTCAAAGCCCAGGCTGATTCTCTTACTTGTGGGAAAGTGGAATGTGTATTCAATGAAATAAAAATTGCAAGGAACGAGGCTGTTCTGAGGGCATGTTCTGAGCCACCTCCTCCTAAATCTTCAGGAGGTATCAGCAAAGACAGCACAAGTAGCCAAGTTGGAGAAAATAAAAAATATGAATATGCTCTGATTTATTCAGTAGAAATTTCTGCAGATATTTTCCTTGCAATCGCTTTCGGTTCCATAACTGCTGGGAGTGAGAAGTGGGCATTTTGTGCAGAGAATGAGGAACAGATAGATGTCTCTGTTGCAGGGATGCAAAGCAACCTCTGTTATTTAATGTTTGTCCAAAACAAACAGCTTGTAACAGTGGTTGCCTCAAGAACTGGTCAACTTACATCACATTATTCACCAAAGAAAATTCCTTCTTTGATAGGTCATTCTTCTTCATAA

Protein sequence

MEFKAQADSLTCGKVECVFNEIKIARNEAVLRACSEPPPPKSSGGISKDSTSSQVGENKKYEYALIYSVEISADIFLAIAFGSITAGSEKWAFCAENEEQIDVSVAGMQSNLCYLMFVQNKQLVTVVASRTGQLTSHYSPKKIPSLIGHSSS
Homology
[Close]
BLAST of Moc07g00560.1 vs. NCBI nr
Match: XP_022148968.1 (uncharacterized protein LOC111017505 [Momordica charantia] >XP_022148970.1 uncharacterized protein LOC111017505 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 22 IKIARNEAVLRACSEPPPPKSSGGISKDSTSSQVGENK 60
          +++ +NEAVLRACSEPPPPKSSGGISKDSTSSQVGENK
Sbjct: 42 LRVWQNEAVLRACSEPPPPKSSGGISKDSTSSQVGENK 79

[Close]
BLAST of Moc07g00560.1 vs. ExPASy TrEMBL
Match: A0A6J1D5J5 (uncharacterized protein LOC111017505 OS=Momordica charantia OX=3673 GN=LOC111017505 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.0e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 22 IKIARNEAVLRACSEPPPPKSSGGISKDSTSSQVGENK 60
          +++ +NEAVLRACSEPPPPKSSGGISKDSTSSQVGENK
Sbjct: 42 LRVWQNEAVLRACSEPPPPKSSGGISKDSTSSQVGENK 79

The following BLAST results are available for this feature:
BLAST of Moc07g00560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148968.11.4e-0886.84uncharacterized protein LOC111017505 [Momordica charantia] >XP_022148970.1 uncha... [more]
BLAST of Moc07g00560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g00560.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D5J57.0e-0986.84uncharacterized protein LOC111017505 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
BLAST of Moc07g00560.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..55

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc07g00560Moc07g00560gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc07g00560.1.exon1Moc07g00560.1.exon1exon
Moc07g00560.1.exon2Moc07g00560.1.exon2exon
Moc07g00560.1.exon3Moc07g00560.1.exon3exon
Moc07g00560.1.exon4Moc07g00560.1.exon4exon
Moc07g00560.1.exon5Moc07g00560.1.exon5exon
Moc07g00560.1.exon6Moc07g00560.1.exon6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc07g00560.1cds.Moc07g00560.1CDS
cds.Moc07g00560.1cds.Moc07g00560.1_2CDS
cds.Moc07g00560.1cds.Moc07g00560.1_3CDS
cds.Moc07g00560.1cds.Moc07g00560.1_4CDS
cds.Moc07g00560.1cds.Moc07g00560.1_5CDS
cds.Moc07g00560.1cds.Moc07g00560.1_6CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc07g00560.1Moc07g00560.1-proteinpolypeptide