Moc06g38640.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g38640.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	stress-induced protein KIN2-like
Location	chr6: 29992070 .. 29992504 (+)
Sequence length	315
RNA-Seq Expression	Moc06g38640.1
Synteny	Moc06g38640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATAACTCTCAAAAGATGAGCTACCACGCGGGAGAAGCCAAAGGCCAAGCTCAGGTTCTCTCCACCATCGATATTTATATTCAGCCACATCATTTTCTATTAAATATAGCATGCATTAATTTTAATTATTAGTCGATAATATATATCATATTGCCTTAACAACATTTCTAACAGGTTGTGATACACTTGAATATAAGTGGTAGTCTAATTGAAAAATATTCCATGTTTGTTTATTCATGGGATAAAGGGATGCCTGATCAACATGTTGGTTTGTGTTATTCACAGGAGAAGGCAAGCAACATGATGGATAAAGCAAGTGATGCAGCTCAATCAGCAAAAGAATCGATGCAAGAGGCAGGACAACAAGTGAAGGCCAAGGCACAAGGAGTCGCTGATGCTGTCAAAGATGCCACTGGCATGAACAAATGA

mRNA sequence

ATGGCAGATAACTCTCAAAAGATGAGCTACCACGCGGGAGAAGCCAAAGGCCAAGCTCAGGTTGTGATACACTTGAATATAAGTGGTAGTCTAATTGAAAAATATTCCATGTTTGTTTATTCATGGGATAAAGGGATGCCTGATCAACATGTTGGTTTGTGTTATTCACAGGAGAAGGCAAGCAACATGATGGATAAAGCAAGTGATGCAGCTCAATCAGCAAAAGAATCGATGCAAGAGGCAGGACAACAAGTGAAGGCCAAGGCACAAGGAGTCGCTGATGCTGTCAAAGATGCCACTGGCATGAACAAATGA

Coding sequence (CDS)

ATGGCAGATAACTCTCAAAAGATGAGCTACCACGCGGGAGAAGCCAAAGGCCAAGCTCAGGTTGTGATACACTTGAATATAAGTGGTAGTCTAATTGAAAAATATTCCATGTTTGTTTATTCATGGGATAAAGGGATGCCTGATCAACATGTTGGTTTGTGTTATTCACAGGAGAAGGCAAGCAACATGATGGATAAAGCAAGTGATGCAGCTCAATCAGCAAAAGAATCGATGCAAGAGGCAGGACAACAAGTGAAGGCCAAGGCACAAGGAGTCGCTGATGCTGTCAAAGATGCCACTGGCATGAACAAATGA

Protein sequence

MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK

Homology

[Close]

BLAST of Moc06g38640.1 vs. NCBI nr
Match: XP_022159716.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-19
Identity = 67/104 (64.42%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYHAGEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHAGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK
Sbjct: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. NCBI nr
Match: XP_022159706.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-18
Identity = 65/104 (62.50%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYHAGEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHAGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASDAAQSAKES+QEAGQQVKAKAQG ADAVKDATGMNK
Sbjct: 61  SNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. NCBI nr
Match: XP_008437025.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 63/104 (60.58%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYH GEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHVGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASD AQSAKESMQEAGQQ+KAKAQG ADAVKDATGMNK
Sbjct: 61  SNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. NCBI nr
Match: GAV60064.1 (hypothetical protein CFOL_v3_03595 [Cephalotus follicularis])

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-16
Identity = 61/104 (58.65%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYHAGEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHAGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
             MMDKAS+AAQSAKESMQE GQQ+KAKAQG ADAVKDATGMNK
Sbjct: 61  GTMMDKASNAAQSAKESMQETGQQMKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. NCBI nr
Match: XP_004152387.1 (stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein Csa_000602 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-16
Identity = 60/104 (57.69%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNS+KMSYH GEAKGQA                                     QEKA
Sbjct: 1   MADNSEKMSYHIGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SN+MDKA D AQSAKESMQEAGQQ+KAKAQG ADAVKDATGMNK
Sbjct: 61  SNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.0e-19
Identity = 67/104 (64.42%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYHAGEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHAGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK
Sbjct: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-18
Identity = 65/104 (62.50%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYHAGEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHAGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASDAAQSAKES+QEAGQQVKAKAQG ADAVKDATGMNK
Sbjct: 61  SNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 63/104 (60.58%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYH GEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHVGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASD AQSAKESMQEAGQQ+KAKAQG ADAVKDATGMNK
Sbjct: 61  SNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 63/104 (60.58%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNSQKMSYH GEAKGQA                                     QEKA
Sbjct: 1   MADNSQKMSYHVGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SNMMDKASD AQSAKESMQEAGQQ+KAKAQG ADAVKDATGMNK
Sbjct: 61  SNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. ExPASy TrEMBL
Match: A0A0A0KRE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-16
Identity = 60/104 (57.69%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           MADNS+KMSYH GEAKGQA                                     QEKA
Sbjct: 1   MADNSEKMSYHIGEAKGQA-------------------------------------QEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SN+MDKA D AQSAKESMQEAGQQ+KAKAQG ADAVKDATGMNK
Sbjct: 61  SNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-13
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           M+ NSQ +S+ AG+AKGQ                                     +QEKA
Sbjct: 1   MSSNSQNISFQAGQAKGQ-------------------------------------TQEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           S MMDKAS+AAQSAKES++E GQQ+K KAQG  ++VK+ATGMNK
Sbjct: 61  STMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNATGMNK 67

[Close]

BLAST of Moc06g38640.1 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-12
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MADNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKA 60
           M++NSQ MS++AG+AKGQ                                     +QEKA
Sbjct: 1   MSNNSQSMSFNAGQAKGQ-------------------------------------TQEKA 60

Query: 61  SNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           SN++DKAS+AAQSAKES+QE GQQ+K KAQG ++ +K+ TG++K
Sbjct: 61  SNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEKTGISK 67

[Close]

BLAST of Moc06g38640.1 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 43/102 (42.16%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 3   DNSQKMSYHAGEAKGQAQVVIHLNISGSLIEKYSMFVYSWDKGMPDQHVGLCYSQEKASN 62
           DN Q  SY AG+A GQ                                     ++EKA  
Sbjct: 2   DNKQNASYQAGQATGQ-------------------------------------TKEKAGG 61

Query: 63  MMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDATGMNK 105
           MMDKA DAA SA++S+Q+ GQQ+K KAQG AD VKD TGMNK
Sbjct: 62  MMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDKTGMNK 66

The following BLAST results are available for this feature:

BLAST of Moc06g38640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159716.1	6.1e-19	64.42	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_022159706.1	5.2e-18	62.50	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_008437025.1	3.4e-17	60.58	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-...	[more]
GAV60064.1	6.4e-16	58.65	hypothetical protein CFOL_v3_03595 [Cephalotus follicularis]	[more]
XP_004152387.1	6.4e-16	57.69	stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein C...	[more]

BLAST of Moc06g38640.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g38640.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4S0	3.0e-19	64.42	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ...	[more]
A0A6J1E4Q8	2.5e-18	62.50	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ...	[more]
A0A5A7TJP0	1.6e-17	60.58	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3ASP1	1.6e-17	60.58	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV...	[more]
A0A0A0KRE1	3.1e-16	57.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1	[more]

BLAST of Moc06g38640.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38760.1	3.1e-13	45.19	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	2.7e-12	42.31	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	1.1e-10	42.16	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 64..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..84
None	No IPR available	PANTHER	PTHR34191:SF23	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 1..104
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g38640	Moc06g38640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g38640.1.exon1	Moc06g38640.1.exon1	exon
Moc06g38640.1.exon2	Moc06g38640.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g38640.1	cds.Moc06g38640.1	CDS
cds.Moc06g38640.1	cds.Moc06g38640.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g38640.1	Moc06g38640.1-protein	polypeptide