Moc06g16710.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g16710.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDUF4283 domain-containing protein
Locationchr6: 13156529 .. 13159551 (-)
Sequence length396
RNA-Seq ExpressionMoc06g16710.1
SyntenyMoc06g16710.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGCGAAGTGGACTTGGTTATCCGTTCTTATTCTGCCTTTCGTACCGATACGGGCATAAATTGGAGTTCTTAATAGTTCCATTCCTCTGGTATTTATGGAAACCCAAAGGCTCATAAGCTCACCCATATGTGGGATTTATTCAGGTGTTTGCATGATTGGGACGACTTAGCATGGGTTGTTGGAGGCGACCTAAACGAAATTCTCTCTCTTAAAGAGAAAGAGGGTGGTAGCGATAAAAGTCAAGCTCAGATAGAGAAATTTCGGGAAACTATCGATGATTGTTGTTTGCAAGATTTGGGCTTCCATGGTACAACTTTCACTTGGTACAATAGGCGAAAATAAAGCGACCAATGTTGGGTTTTATGTCCTAAAACTCATAGTTTTTAAATGCCAAATATATTTTTATCATTCAATAAAGTTGTTATTCAAGGTTTTAATCAATAAGTAGTTATTGATCCAACAAAACGTTCTTATTAGATCTAAATCCAATAAAGTAAGGATCCTAGACTGTTAAATGAGACTCAAACTCTATGTAGAGACATAAATATGGATCAAGTTTGAGTTAACAGTCTAAATGGTCTAAAATATAGGAATAAGGTTGGATGTCTTATTCTTGGGACACTATGGATGCGGCCCACTTTGTAGCTAGTACAAACGATGTGATCCTAATTCGTTCATGTGAAGACATGTGAGTGAGGGCGTCCTGTGCAAAGAGTTTGCATAAGACCGGACCATCAGATAGTCACTTTTACTTTATAACACCATTTATTATATGAAACTGACTATCTCGACTTTGATGGGCTAGATAACTCGATCTTAATCCTGAGCTAACTATGAACTTCTGTTTACTTGGGATTATCCTTAGATCTGCATGGGTCAAAGCAGCTCAACAGCATTGGCTCAATAAGCATCCCAGGGGTAAGACCAGGTAGATAGCTAGGGACATAGGGTGCAAGAAGAAATTCACTCCTACCCAATTCTGAGATAGTAGAGAGGTTATTCTGTTAAGGGCTGAATCCAAGTCTTGAACAATTGGCGCCACCCTCATCAAAAGGTTTGAGAGGATTTTTTGATTTGATAGTTGGACTAAAAATCAATGGTCATTAGAGGATTAGTGAGACTTAAGGAACAAGAGGTAACTATAGGGGTAAAACAGTATTTTGACCCAGCTGTAATTACAAACAACTTGTGAAGGGTCGACTTATCGATCATGGTTATATCAAATGGACATAATATATCTACAATGAAGAGAGTGCAGCTACGGGCTTTAGTGGAGTGACCCGGTAGTTAACAAATGTTGGTTAACTAGGTTAAAGAGTTTAACTGGTTAATCTCGAATCGTTGGAGCTCATGATCTGTAGGTCCATAAGGTCCCCTAGCTAGCTCATATAGGAAAAAACTTGGAATAATTTGAAGGAATAATTCGAATCGTACGAATTAGGTTAATCATATGAGATATGATTAAGTAATTGATATATGATATCAATTGAGAAATTTGGTAAAAATATTTAAATAGGATTTAAATATTAAAATTATGAATGCGAATTCATAATCAAAGGCATGGATTTAGTCAAACAGTTGGATTTTGAAAAAAAAGTCAAATAGTTGACTTTGACCCGAGAAAGTCAAAGGTTTACTAAGAAGATTAAAATAATGTTTTTAACCAAGTTGGTAGAAAATTCCACTAACTTGTTGAGTGGAACATTTAAATAATCTAAAAAAATCCACTTTTTGACACTTAACCATTGCATGCATGAGTGGAGTGTGTGTTGTAAGCTTTTGGTAAACTTAGACATGCATTTTTACACTTAGTCATGCCATGCATGAGCGAAGTATGTGTTGTAAGCTTTTGGTAAACTTAGACATGCAAAAGTTGCATGTATTTTGTCTATTTAAGAAGGCCTTTGTTCAAACATTAAAAACTCTTGGAACCTTTGGTCATTTGATGTTTTTCAAAAAGCTTACATAACTCCTTTTAGCTCTATATTTCTCTCAAATTTTCCTTCTCTAAAAAAAGTCGCACCACTCTATTCCAAGCCTTGAGAATAGTTAGGAAGACCGCTTGGTGGTCCTCATTGGAGTTATTTAATGAAATTAAGCTACAAAGGTATGTAATTTTCTCTACCTTTCTCTAAGCACATAATGTATGATCATGCATGTCTAATCCTAGGTTGTAATATGCATCTAGATTATTATTTCGATCCTTGCTCGCTTCCGCTGCGCATGTATGTATATTTTCCATCAACCAAACCTGCGAAAGACTGGACCTTTATCTGGGCAATGAGGCCTTTAGAAGCCTGTGGACAAATCTGAAAGTAACCTACCAAAATGGGTCAAATCGGACCATAGGCCCATCCTCCTTAACCTGTTTGAAACTCACAACCGTTGTTTCTGTCGAGGCTCCAGTTTTAAATTTGAGGAAGCCTGGACTAGTAATACCATGTGTGGAAATATTATTACAAAGGCCGGTAGTTGGGATGAGGAGAATAATTTTCATAGGCCAGAAGAAAGTTTGAAGAAGTGTGCGTGACAGCGTTGAGGCAGTGGGGGAAAAATTTTCAACAATAATTTTAAAAAACATATTCTGCACATCTAAACGACAATCTCGTAGATATACTCGAGCCTGCCTCCCAGGGATTTTGTGATCGTCCAAAAATTGGAAAAATAATTGGACAAATTACTAGAAATAGAGGAAATATATTTGAAATAGAGATCTCGAGAGGATTGGCTACAATGGGGGAACAGAAACACCAAGTGGTTCCATAAACATGCAACGATGAAGAGATAGAAGAACTTGATTCGAGGGATTGAAATCGAGAATAACCAGTGAAATGAGGATATGAATATTGTGGAGCAAAGATTCATATATTATTTTAAAGGCCTTTCTCTTCTAGGTCCTACTGAGGAAGATATGCTAAAAATTTTGAGACAGGTTCCTTGCATGGTGACTCACGAAATGAACATGAAACTACTTGCTCCTTTTGAGATGTCAGAAATAGAACAGGCTTTGAAATAG

mRNA sequence

ATGGAAGAGCGAAGTGGACTTGGTTATCCGTTCTTATTCTGCCTTTCGTACCGATACGGGCATAAATTGGAGTTCTTAATAGTTCCATTCCTCTGGTGTTTGCATGATTGGGACGACTTAGCATGGGTTGTTGGAGGCGACCTAAACGAAATTCTCTCTCTTAAAGAGAAAGAGGGTGGTAGCGATAAAAGTCAAGCTCAGATAGAGAAATTTCGGGAAACTATCGATGATTGTTGTTTGCAAGATTTGGGCTTCCATGATCTGCATGGGTCAAAGCAGCTCAACAGCATTGGCTCAATAAGCATCCCAGGGGTTCCTTGCATGGTGACTCACGAAATGAACATGAAACTACTTGCTCCTTTTGAGATGTCAGAAATAGAACAGGCTTTGAAATAG

Coding sequence (CDS)

ATGGAAGAGCGAAGTGGACTTGGTTATCCGTTCTTATTCTGCCTTTCGTACCGATACGGGCATAAATTGGAGTTCTTAATAGTTCCATTCCTCTGGTGTTTGCATGATTGGGACGACTTAGCATGGGTTGTTGGAGGCGACCTAAACGAAATTCTCTCTCTTAAAGAGAAAGAGGGTGGTAGCGATAAAAGTCAAGCTCAGATAGAGAAATTTCGGGAAACTATCGATGATTGTTGTTTGCAAGATTTGGGCTTCCATGATCTGCATGGGTCAAAGCAGCTCAACAGCATTGGCTCAATAAGCATCCCAGGGGTTCCTTGCATGGTGACTCACGAAATGAACATGAAACTACTTGCTCCTTTTGAGATGTCAGAAATAGAACAGGCTTTGAAATAG

Protein sequence

MEERSGLGYPFLFCLSYRYGHKLEFLIVPFLWCLHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGFHDLHGSKQLNSIGSISIPGVPCMVTHEMNMKLLAPFEMSEIEQALK
Homology
[Close]
BLAST of Moc06g16710.1 vs. NCBI nr
Match: TXG65080.1 (hypothetical protein EZV62_012074 [Acer yangbiense])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-08
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 38 DDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGFHDLHGSK 93
          DDL W+ GGD NEIL ++EK GGSDKS   I +FRE IDDC L DLGF    GSK
Sbjct: 5  DDLPWLCGGDFNEILKVEEKSGGSDKSILGICQFREVIDDCNLVDLGF---EGSK 56

[Close]
BLAST of Moc06g16710.1 vs. NCBI nr
Match: TXG57064.1 (hypothetical protein EZV62_018377 [Acer yangbiense])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGF 86
           L   DD +W+ GGD NEIL +KEK GGS+KS   I +FRE IDDC L DLGF
Sbjct: 114 LRSVDDFSWLCGGDFNEILRVKEKSGGSNKSILGICQFREVIDDCNLVDLGF 165

[Close]
BLAST of Moc06g16710.1 vs. NCBI nr
Match: KAF4360183.1 (hypothetical protein F8388_000052 [Cannabis sativa] >KAF4386042.1 hypothetical protein G4B88_031177 [Cannabis sativa])

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-07
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGFHDLHGSKQ 93
           L D  DL WV GGD NEILS+ EK+GGSD+S   + +F+  +D C L DLG       K+
Sbjct: 99  LKDLFDLPWVCGGDFNEILSINEKKGGSDRSMVAMTEFQNALDGCSLADLG-QVRETQKE 158

Query: 94  LNSIGSISIP 104
           L+ + ++S P
Sbjct: 159 LDDLLNVSAP 167

[Close]
BLAST of Moc06g16710.1 vs. NCBI nr
Match: TXG53035.1 (hypothetical protein EZV62_022204 [Acer yangbiense])

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGF 86
           L + D+L WV  GD N+ILS+ EKEGGS KS + +  FR+TIDDC L DLGF
Sbjct: 423 LREVDNLPWVCDGDFNDILSMTEKEGGSAKSFSDMYNFRQTIDDCNLIDLGF 474

[Close]
BLAST of Moc06g16710.1 vs. NCBI nr
Match: KAF4381998.1 (hypothetical protein G4B88_006630 [Cannabis sativa])

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-07
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGF 86
           L D  DL W+ GGD NEILS+ EK+GGSD+S + + +F+  +D C L DLGF
Sbjct: 566 LKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGF 617

[Close]
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match: A0A5C7I700 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012074 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 38 DDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGFHDLHGSK 93
          DDL W+ GGD NEIL ++EK GGSDKS   I +FRE IDDC L DLGF    GSK
Sbjct: 5  DDLPWLCGGDFNEILKVEEKSGGSDKSILGICQFREVIDDCNLVDLGF---EGSK 56

[Close]
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match: A0A2N9EZL9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8167 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 4   RSGLGYPFLFCLSYRYGH---KLEFLIVPFLWCLHDWDDLAWVVGGDLNEILSLKEKEGG 63
           R G G   L+C +  YGH    L +L    L   H   D  W+V GD NEIL+LKEK+G 
Sbjct: 227 RYGGGLALLWCFTGFYGHPKTALRYLSWALLLSFHALSDKPWMVLGDFNEILALKEKQGC 286

Query: 64  SDKSQAQIEKFRETIDDCCLQDLGF 86
            DKS  Q+ +FR+ + +C L D GF
Sbjct: 287 EDKSFHQMARFRDVLANCSLMDFGF 311

[Close]
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match: A0A5C7HJN1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018377 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.7e-08
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGF 86
           L   DD +W+ GGD NEIL +KEK GGS+KS   I +FRE IDDC L DLGF
Sbjct: 114 LRSVDDFSWLCGGDFNEILRVKEKSGGSNKSILGICQFREVIDDCNLVDLGF 165

[Close]
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match: A0A2N9I236 (Peptidylprolyl isomerase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46370 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGFH 87
           LH      W+V GD NEI++L EK G  D+S AQ+  FRE + DCCL+DLGFH
Sbjct: 486 LHAGHSAPWLVLGDFNEIVALDEKSGREDRSLAQMAAFREALSDCCLRDLGFH 538

[Close]
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match: A0A7J6EP51 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000052 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 34  LHDWDDLAWVVGGDLNEILSLKEKEGGSDKSQAQIEKFRETIDDCCLQDLGFHDLHGSKQ 93
           L D  DL WV GGD NEILS+ EK+GGSD+S   + +F+  +D C L DLG       K+
Sbjct: 99  LKDLFDLPWVCGGDFNEILSINEKKGGSDRSMVAMTEFQNALDGCSLADLG-QVRETQKE 158

Query: 94  LNSIGSISIP 104
           L+ + ++S P
Sbjct: 159 LDDLLNVSAP 167

The following BLAST results are available for this feature:
BLAST of Moc06g16710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TXG65080.14.7e-0863.64hypothetical protein EZV62_012074 [Acer yangbiense][more]
TXG57064.11.8e-0761.54hypothetical protein EZV62_018377 [Acer yangbiense][more]
KAF4360183.14.0e-0745.71hypothetical protein F8388_000052 [Cannabis sativa] >KAF4386042.1 hypothetical p... [more]
TXG53035.14.0e-0759.62hypothetical protein EZV62_022204 [Acer yangbiense][more]
KAF4381998.16.8e-0753.85hypothetical protein G4B88_006630 [Cannabis sativa][more]
BLAST of Moc06g16710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5C7I7002.3e-0863.64Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012074 PE=4 SV=1[more]
A0A2N9EZL92.3e-0843.53Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8167 PE=4 SV=1[more]
A0A5C7HJN18.7e-0861.54Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018377 PE=4 SV=1[more]
A0A2N9I2361.5e-0754.72Peptidylprolyl isomerase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46370 PE=4 SV=1[more]
A0A7J6EP511.9e-0745.71Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000052 PE=4 SV=1[more]
BLAST of Moc06g16710.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc06g16710Moc06g16710gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc06g16710.1.exon4Moc06g16710.1.exon4exon
Moc06g16710.1.exon3Moc06g16710.1.exon3exon
Moc06g16710.1.exon2Moc06g16710.1.exon2exon
Moc06g16710.1.exon1Moc06g16710.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc06g16710.1cds.Moc06g16710.1_4CDS
cds.Moc06g16710.1cds.Moc06g16710.1_3CDS
cds.Moc06g16710.1cds.Moc06g16710.1_2CDS
cds.Moc06g16710.1cds.Moc06g16710.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc06g16710.1Moc06g16710.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity