Moc06g16690.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g16690.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 13143530 .. 13143931 (-)
Sequence length402
RNA-Seq ExpressionMoc06g16690.1
SyntenyMoc06g16690.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATCTTTCGAACGTTGAAATCGCCCTAGCAAGCATTACCTGTTGGGCTATCTGGAATGACAAGAATTTGAAGTTAAACAAAAAGCAAGTTCTTGAGGTTTCTACCAAGGTCAACTGGATTATTGATTGTGCCAATGAGTTTTCTTCTAAAACAAGAAGGAGTCAAGCAATCGTAGCAACAATCTACCTCGAAGAAATGATTGGCTCTTCCCCCGTGGGTTTGGTGAAGATTAATACAGATGACGCCTGCAATAATCGTAGATCTAGTGTAGGGGTTCTGCTTAGGGATGAGAAGTCAGGTATTATAGCAGCTATGGTGGGTATTTATCTAGGGCGTTGTCCTCAAGTAGAGGAAATTACAACGATCCGAGATGGTTTGAGGCTGCTCTACAACTAG

mRNA sequence

ATGGAAAATCTTTCGAACGTTGAAATCGCCCTAGCAAGCATTACCTGTTGGGCTATCTGGAATGACAAGAATTTGAAGTTAAACAAAAAGCAAGTTCTTGAGGTTTCTACCAAGGTCAACTGGATTATTGATTGTGCCAATGAGTTTTCTTCTAAAACAAGAAGGAGTCAAGCAATCGTAGCAACAATCTACCTCGAAGAAATGATTGGCTCTTCCCCCGTGGGTTTGGTGAAGATTAATACAGATGACGCCTGCAATAATCGTAGATCTAGTGTAGGGGTTCTGCTTAGGGATGAGAAGTCAGGTATTATAGCAGCTATGGTGGGTATTTATCTAGGGCGTTGTCCTCAAGTAGAGGAAATTACAACGATCCGAGATGGTTTGAGGCTGCTCTACAACTAG

Coding sequence (CDS)

ATGGAAAATCTTTCGAACGTTGAAATCGCCCTAGCAAGCATTACCTGTTGGGCTATCTGGAATGACAAGAATTTGAAGTTAAACAAAAAGCAAGTTCTTGAGGTTTCTACCAAGGTCAACTGGATTATTGATTGTGCCAATGAGTTTTCTTCTAAAACAAGAAGGAGTCAAGCAATCGTAGCAACAATCTACCTCGAAGAAATGATTGGCTCTTCCCCCGTGGGTTTGGTGAAGATTAATACAGATGACGCCTGCAATAATCGTAGATCTAGTGTAGGGGTTCTGCTTAGGGATGAGAAGTCAGGTATTATAGCAGCTATGGTGGGTATTTATCTAGGGCGTTGTCCTCAAGTAGAGGAAATTACAACGATCCGAGATGGTTTGAGGCTGCTCTACAACTAG

Protein sequence

MENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRRSQAIVATIYLEEMIGSSPVGLVKINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQVEEITTIRDGLRLLYN
Homology
BLAST of Moc06g16690.1 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 52/132 (39.39%), Postives = 75/132 (56.82%), Query Frame = 0

Query: 1   MENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRR--SQA 60
           M+NLS  E+ L  ITCWA+WND++  +NKK++ E   KV WI+  A E   K      + 
Sbjct: 1   MQNLSTSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRR 60

Query: 61  IVATIYLEEMIGSSPVGLVKINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQV 120
           I         +G    G+VK+NTD A +   S VGVLLR+  + I+ AMV  ++ + P +
Sbjct: 61  IPRVNEWRPPLG----GVVKMNTDAAVSEEGSGVGVLLREGNAEIVGAMVDFHMVKTPLL 120

Query: 121 EEITTIRDGLRL 131
            +I  IR+GL L
Sbjct: 121 AKILAIREGLSL 128

BLAST of Moc06g16690.1 vs. NCBI nr
Match: XP_022141766.1 (uncharacterized protein LOC111012047 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 0

Query: 2   ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRRSQAIVA 61
           ENL+  E+ LA I CWA WND+N + N   V +V T+ +WI + A E  ++ R++     
Sbjct: 21  ENLTLEELLLAGIICWANWNDRNQRNNGIDVADVHTESDWITNYAMELLTRRRKTNEAQK 80

Query: 62  TIYLEEMIGSSPVGLVKINTDDA--CNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQVE 121
            +    +      G VK+N D A    N+R  VGVL+RD+++ I+AA++  +    P + 
Sbjct: 81  NLPCLAIWKPPSKGTVKLNVDAAFDVRNQRGGVGVLVRDDRNSILAALISSHNVNSPLLA 140

Query: 122 EITTIRDGLRL 131
           EI  IR+ +RL
Sbjct: 141 EICAIREAVRL 151

BLAST of Moc06g16690.1 vs. NCBI nr
Match: XP_022155289.1 (uncharacterized protein LOC111022426 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 0

Query: 1   MENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRRSQAIV 60
           M+NLS   + LA ITCWA+WND N  +NKK++ E   K               RR   + 
Sbjct: 85  MKNLSASNLRLAEITCWALWNDHNALINKKKIPEAPIK---------------RRIPRVN 144

Query: 61  ATIYLEEMIGSSPVG-LVKINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQVE 120
           A           P+G +VK+NTD A +   S VGVLLRD  + I+AAM+  ++ + P + 
Sbjct: 145 AW-------RPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMIDFHVVKTPLLT 193

Query: 121 EITTIRDGLRL 131
           EI  IR+GLRL
Sbjct: 205 EILAIREGLRL 193

BLAST of Moc06g16690.1 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-07
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 0

Query: 2    ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCAN-----EFSSKTRRS 61
            E L   ++ LA+IT W IWND+N  ++ KQV  V  K  W+    +     + S+ + R+
Sbjct: 1224 EQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRT 1283

Query: 62   QAIVATIYLEEMIGSSPVGLVKINTDDACNNRRSSVGVLLRDEKSGIIAA-MVGIYLGRC 121
            Q+    + ++    SS V L K+NTD AC    +S G ++RD    ++AA  + +     
Sbjct: 1284 QSNHRPV-VQYWRPSSSVSL-KLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLS 1343

Query: 122  PQVEEITTIRDGLR 130
            P + EI  I +GL+
Sbjct: 1344 PLLAEIRCILEGLK 1355

BLAST of Moc06g16690.1 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 52/132 (39.39%), Postives = 75/132 (56.82%), Query Frame = 0

Query: 1   MENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRR--SQA 60
           M+NLS  E+ L  ITCWA+WND++  +NKK++ E   KV WI+  A E   K      + 
Sbjct: 1   MQNLSTSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRR 60

Query: 61  IVATIYLEEMIGSSPVGLVKINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQV 120
           I         +G    G+VK+NTD A +   S VGVLLR+  + I+ AMV  ++ + P +
Sbjct: 61  IPRVNEWRPPLG----GVVKMNTDAAVSEEGSGVGVLLREGNAEIVGAMVDFHMVKTPLL 120

Query: 121 EEITTIRDGLRL 131
            +I  IR+GL L
Sbjct: 121 AKILAIREGLSL 128

BLAST of Moc06g16690.1 vs. ExPASy TrEMBL
Match: A0A6J1CK80 (uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012047 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 0

Query: 2   ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRRSQAIVA 61
           ENL+  E+ LA I CWA WND+N + N   V +V T+ +WI + A E  ++ R++     
Sbjct: 21  ENLTLEELLLAGIICWANWNDRNQRNNGIDVADVHTESDWITNYAMELLTRRRKTNEAQK 80

Query: 62  TIYLEEMIGSSPVGLVKINTDDA--CNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQVE 121
            +    +      G VK+N D A    N+R  VGVL+RD+++ I+AA++  +    P + 
Sbjct: 81  NLPCLAIWKPPSKGTVKLNVDAAFDVRNQRGGVGVLVRDDRNSILAALISSHNVNSPLLA 140

Query: 122 EITTIRDGLRL 131
           EI  IR+ +RL
Sbjct: 141 EICAIREAVRL 151

BLAST of Moc06g16690.1 vs. ExPASy TrEMBL
Match: A0A6J1DPU1 (uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022426 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 0

Query: 1   MENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCANEFSSKTRRSQAIV 60
           M+NLS   + LA ITCWA+WND N  +NKK++ E   K               RR   + 
Sbjct: 85  MKNLSASNLRLAEITCWALWNDHNALINKKKIPEAPIK---------------RRIPRVN 144

Query: 61  ATIYLEEMIGSSPVG-LVKINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYLGRCPQVE 120
           A           P+G +VK+NTD A +   S VGVLLRD  + I+AAM+  ++ + P + 
Sbjct: 145 AW-------RPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMIDFHVVKTPLLT 193

Query: 121 EITTIRDGLRL 131
           EI  IR+GLRL
Sbjct: 205 EILAIREGLRL 193

BLAST of Moc06g16690.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-07
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 0

Query: 2    ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEVSTKVNWIIDCAN-----EFSSKTRRS 61
            E L   ++ LA+IT W IWND+N  ++ KQV  V  K  W+    +     + S+ + R+
Sbjct: 1224 EQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRT 1283

Query: 62   QAIVATIYLEEMIGSSPVGLVKINTDDACNNRRSSVGVLLRDEKSGIIAA-MVGIYLGRC 121
            Q+    + ++    SS V L K+NTD AC    +S G ++RD    ++AA  + +     
Sbjct: 1284 QSNHRPV-VQYWRPSSSVSL-KLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLS 1343

Query: 122  PQVEEITTIRDGLR 130
            P + EI  I +GL+
Sbjct: 1344 PLLAEIRCILEGLK 1355

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158489.16.2e-1639.39uncharacterized protein LOC111024968 [Momordica charantia][more]
XP_022141766.11.7e-1335.88uncharacterized protein LOC111012047 [Momordica charantia][more]
XP_022155289.11.1e-1239.69uncharacterized protein LOC111022426 [Momordica charantia][more]
XP_022158377.15.3e-0732.09uncharacterized protein LOC111024874 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DZK33.0e-1639.39uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1CK808.2e-1435.88uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DPU15.3e-1339.69uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DX302.6e-0732.09uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc06g16690Moc06g16690gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc06g16690.1.exon1Moc06g16690.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc06g16690.1cds.Moc06g16690.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc06g16690.1Moc06g16690.1-proteinpolypeptide