Moc06g15740.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g15740.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr6: 12406555 .. 12407799 (-)
Sequence length	1245
RNA-Seq Expression	Moc06g15740.1
Synteny	Moc06g15740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCGACAAAGCAGTTGGGCAAGTCCCACGTCGACAGACTCGTCGAGATCGAAGAACAGCTGTTGTTCTTGAGGGAAATCCTTGACAACCTTAGATATGTGGAATCTCGGCTGGATGAGATCTCCACCAAAGCTGACGGAATTGACGTCGTGAATGTCCGCATAGACGGGCTTGCTATACGTGAGTTAATGCTTCGGGTTGAGACCCTTGAAGACAAGGTTAAGCGTACTGATAACCTTGAGCGTGGCGAAAGCTCATCGAGCTCAATCGCCCACATGGAGGAGCGTGTCGAAGAAATAGACATCTCCCAGAAGACTATTGTGCAGATGGTCAGTGAGCTGACCGACGACTTCAAAGCCACCATCGACGAAATGAGGGCGGAGATTGCCAAATTAGGCACCAAAGTAAATCTCACCATGAGAGCGGTGGGAAATCAGGCCCCAGCTGGGGGACCGATTCAGTTCAACAAGGTGAAAGTTCCCAAACCCAAGCCCTTCTGTGGGGCGCGAGATGCTAAAGCGCTTGAGAACTTCATCTTCGACCTTGAGCAGTACTTCAAGGCGACAAGCACGGTGACAGAGGAATCGAAAGTCACACTAGCCACAATGCATCTTGCCGACGATGCGAAGTTGTGGTGGAGAGCGAGATATGTAGATGTACAAGAGGGCAAATGTACCATCGACACGTGGGAAAAACTAAAGCAGGAACTCAGATCCCAATTTTTCCCGGAGAATGTAGAGATTCTTGCCCGTCGTAAACTGCGTGAATTACGACACACAGGAAATATTCGAGACTATGTAAAGCAGTTTTCAGGGTTGATGTTGGACATCCACGATATGTCCGAGAAAGACAAGGTCTTCGCCTTCGTGGAGGGCTTGAAACCATGGGCCCGGCCAAACTGTATGAACAGAAGGTACAAGATATCCCTACTGCTTACGCAACAGCCAAACGGTTGTTCGATCTTAGCAACGATACATCACAAGAGCAGAGGAAGACCCAAGCTTCTTCCAGTAGTGGGAACAGACCCGCTAGATCGGGGTCCCCTAAAACTGGGGGAGCTGACAGAAATGGAGGAGGAGACCGCAAACCCTTCCAGCAGAGAGAGGGAAATACATGGAGAGGGCCGAACCCACCGAACAATAACAATCAGACAGGACCATCCTGCTTCATTTGTAAGGGACCGCACAGAGTATACGAGTGTCCGAATCGAGCTGCTCTCCGAGCCTTCCAAGCCACACTGA

mRNA sequence

ATGTCCGCGACAAAGCAGTTGGGCAAGTCCCACGTCGACAGACTCGTCGAGATCGAAGAACAGCTGTTGTTCTTGAGGGAAATCCTTGACAACCTTAGATATGTGGAATCTCGGCTGGATGAGATCTCCACCAAAGCTGACGGAATTGACGTCGTGAATGTCCGCATAGACGGGCTTGCTATACGTGAGTTAATGCTTCGGGTTGAGACCCTTGAAGACAAGGTTAAGCGTACTGATAACCTTGAGCGTGGCGAAAGCTCATCGAGCTCAATCGCCCACATGGAGGAGCGTGTCGAAGAAATAGACATCTCCCAGAAGACTATTGTGCAGATGGTCAGTGAGCTGACCGACGACTTCAAAGCCACCATCGACGAAATGAGGGCGGAGATTGCCAAATTAGGCACCAAAGTAAATCTCACCATGAGAGCGGTGGGAAATCAGGCCCCAGCTGGGGGACCGATTCAGTTCAACAAGGTGAAAGTTCCCAAACCCAAGCCCTTCTGTGGGGCGCGAGATGCTAAAGCGCTTGAGAACTTCATCTTCGACCTTGAGCAGTACTTCAAGGCGACAAGCACGGTGACAGAGGAATCGAAAGTCACACTAGCCACAATGCATCTTGCCGACGATGCGAAGTTGTGGTGGAGAGCGAGATATGTAGATGTACAAGAGGGCAAATGTACCATCGACACGTGGGAAAAACTAAAGCAGGAACTCAGATCCCAATTTTTCCCGGAGAATGTAGAGATTCTTGCCCGTCGTAAACTGCGTGAATTACGACACACAGGAAATATTCGAGACTATGTAAAGCAGTTTTCAGGGTTGATGTTGGACATCCACGATATGTCCGAGAAAGACAAGGTCTTCGCCTTCGTGGAGGGCTTGAAACCATGGGCCCGGCCAAACTGTATGAACAGAAGGTACAAGATATCCCTACTGCTTACGCAACAGCCAAACGGTTGTTCGATCTTAGCAACGATACATCACAAGAGCAGAGGAAGACCCAAGCTTCTTCCAGTAGTGGGAACAGACCCGCTAGATCGGGGTCCCCTAAAACTGGGGGAGCTGACAGAAATGGAGGAGGAGACCGCAAACCCTTCCAGCAGAGAGAGGGAAATACATGGAGAGGGCCGAACCCACCGAACAATAACAATCAGACAGGACCATCCTGCTTCATTTGTAAGGGACCGCACAGAGTATACGAGTGTCCGAATCGAGCTGCTCTCCGAGCCTTCCAAGCCACACTGA

Coding sequence (CDS)

ATGTCCGCGACAAAGCAGTTGGGCAAGTCCCACGTCGACAGACTCGTCGAGATCGAAGAACAGCTGTTGTTCTTGAGGGAAATCCTTGACAACCTTAGATATGTGGAATCTCGGCTGGATGAGATCTCCACCAAAGCTGACGGAATTGACGTCGTGAATGTCCGCATAGACGGGCTTGCTATACGTGAGTTAATGCTTCGGGTTGAGACCCTTGAAGACAAGGTTAAGCGTACTGATAACCTTGAGCGTGGCGAAAGCTCATCGAGCTCAATCGCCCACATGGAGGAGCGTGTCGAAGAAATAGACATCTCCCAGAAGACTATTGTGCAGATGGTCAGTGAGCTGACCGACGACTTCAAAGCCACCATCGACGAAATGAGGGCGGAGATTGCCAAATTAGGCACCAAAGTAAATCTCACCATGAGAGCGGTGGGAAATCAGGCCCCAGCTGGGGGACCGATTCAGTTCAACAAGGTGAAAGTTCCCAAACCCAAGCCCTTCTGTGGGGCGCGAGATGCTAAAGCGCTTGAGAACTTCATCTTCGACCTTGAGCAGTACTTCAAGGCGACAAGCACGGTGACAGAGGAATCGAAAGTCACACTAGCCACAATGCATCTTGCCGACGATGCGAAGTTGTGGTGGAGAGCGAGATATGTAGATGTACAAGAGGGCAAATGTACCATCGACACGTGGGAAAAACTAAAGCAGGAACTCAGATCCCAATTTTTCCCGGAGAATGTAGAGATTCTTGCCCGTCGTAAACTGCGTGAATTACGACACACAGGAAATATTCGAGACTATGTAAAGCAGTTTTCAGGGTTGATGTTGGACATCCACGATATGTCCGAGAAAGACAAGGTCTTCGCCTTCGTGGAGGGCTTGAAACCATGGGCCCGGCCAAACTGTATGAACAGAAGGTACAAGATATCCCTACTGCTTACGCAACAGCCAAACGGTTGTTCGATCTTAGCAACGATACATCACAAGAGCAGAGGAAGACCCAAGCTTCTTCCAGTAGTGGGAACAGACCCGCTAGATCGGGGTCCCCTAAAACTGGGGGAGCTGACAGAAATGGAGGAGGAGACCGCAAACCCTTCCAGCAGAGAGAGGGAAATACATGGAGAGGGCCGAACCCACCGAACAATAACAATCAGACAGGACCATCCTGCTTCATTTGTAAGGGACCGCACAGAGTATACGAGTGTCCGAATCGAGCTGCTCTCCGAGCCTTCCAAGCCACACTGA

Protein sequence

MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLAIRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDDFKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALENFIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWARPNCMNRRYKISLLLTQQPNGCSILATIHHKSRGRPKLLPVVGTDPLDRGPLKLGELTEMEEETANPSSREREIHGEGRTHRTITIRQDHPASFVRDRTEYTSVRIELLSEPSKPH

Homology

[Close]

BLAST of Moc06g15740.1 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 445.3 bits (1144), Expect = 5.8e-121
Identity = 242/299 (80.94%), Postives = 250/299 (83.61%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS TKQLGKSH+DRLVEIEE+LLFLREI DNLRYVESRLDEISTKADGIDVVN RIDGLA
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDDFK 120
           IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDIS+KTIVQMVSELTDDFK
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISKKTIVQMVSELTDDFK 120

Query: 121 ATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALENFI 180
           AT+DEMRAEIA+LGT                             KPFCGARDAKALENFI
Sbjct: 121 ATVDEMRAEIAELGT-----------------------------KPFCGARDAKALENFI 180

Query: 181 FDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRS 240
           FDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRS
Sbjct: 181 FDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRS 240

Query: 241 QFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWAR 300
           Q    ++  +          TGNIRDYVKQFSGLMLDI DMSEKDKVFAFVEGLKPWAR
Sbjct: 241 Q----SINFVN-------YDTGNIRDYVKQFSGLMLDIRDMSEKDKVFAFVEGLKPWAR 259

[Close]

BLAST of Moc06g15740.1 vs. NCBI nr
Match: KAA0036604.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 1.3e-117
Identity = 226/387 (58.40%), Postives = 297/387 (76.74%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++   GK+  DRLVE+EEQ+L+L E+ D++RY+ESRL+EIS K + ID V  R++G  
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFP 60

Query: 61  IRELMLRVETLEDKVK--RTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+ELM RV+ LE  V   RT N ERG+SS+ S+AH+EERV+E+D SQKT+++M++ +++D
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           F+AT+D +R EIA +  +++LTMRA+ NQAPAGG I  ++VK+P+PKPFCGARDAKALEN
Sbjct: 121 FRATLDVIRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYF+AT+TVTEE+KVTLATMHL++DAKLWWR+R+VD+QEG+CTIDTW+ LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEIL RRKLREL+HTG+IR+YVKQF+GLMLDI DMS+KDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILTRRKLRELKHTGSIREYVKQFAGLMLDIRDMSDKDKVFCFVEGLKPWA 300

Query: 301 RPNCMNRRYKISLLLTQQPNGC-SILATIHHKSRGRPKLLPVVGTDPLDRGPLKLGELTE 360
           +     +R +       QPNGC + L T+  +   +   L  VGT    +  LKL E T+
Sbjct: 301 KTKLYEQRVQDLTSAYLQPNGCLTCLTTLKIRDVIQVPHLEEVGTTA--QVLLKLQEGTD 360

Query: 361 MEEETANPSSREREIHGEGRTHRTITI 385
              E  +P +R  E  GE +  R   I
Sbjct: 361 ALMEIVDPINRILETPGEDQVTRICPI 385

[Close]

BLAST of Moc06g15740.1 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 424.1 bits (1089), Expect = 1.4e-114
Identity = 205/308 (66.56%), Postives = 265/308 (86.04%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++  LGK+  DRLVE+EEQ+L+L E+ D++RY+ESRL+EIS K + ID V  R++G  
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IRELMLRVETLEDKVK--RTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+ELM RV+ LE  V   RT N ERG+SS+ S+AH+EERV+E+D SQKT+++M++ +++D
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           F+AT+D +R EIA +  +++LTMRA+ NQAPAGG I  ++VK+P+PKPFCGARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYF+AT+TVTEE+KVTLATMHL++DAKLWWR+R+VD+QEG+CTIDTW+ LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEILARRKLREL+HTG+IR+YVKQF+GLMLDI DMSEKDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWA 300

Query: 301 RPNCMNRR 307
           +     +R
Sbjct: 301 KTKLYEQR 308

[Close]

BLAST of Moc06g15740.1 vs. NCBI nr
Match: TYK03044.1 (uncharacterized protein E5676_scaffold46G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 423.7 bits (1088), Expect = 1.8e-114
Identity = 207/308 (67.21%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++   GK+  DRLVEIEEQ+L+L E+ D++RY+ESR+DEIS KA+ ID V  R++GL 
Sbjct: 1   MSSSNSSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IRELMLRVETLED--KVKRTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+EL+ RV+ LE+    +RT N ERGESSS   AHMEERV E+D +QKT+++M++ +++D
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFAAHMEERVSELDNTQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           FK T+D +R EIA +  +++LTMRA+ NQAPAGG I  +KVKVP+PKPFCGARDAKALEN
Sbjct: 121 FKVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAISVSKVKVPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYFKAT+T+ EE+KVTLATMHL++DAKLWWR+RYVD+QEG+CT+DTW+ LK+EL
Sbjct: 181 YIFDLEQYFKATNTIAEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEILARRKLR+LRHTG IR+YVKQF+GLMLDI DMSEKDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILARRKLRDLRHTGEIREYVKQFAGLMLDIRDMSEKDKVFYFVEGLKPWA 300

Query: 301 RPNCMNRR 307
           +     +R
Sbjct: 301 KAKLYEQR 308

[Close]

BLAST of Moc06g15740.1 vs. NCBI nr
Match: TYK18566.1 (uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 422.9 bits (1086), Expect = 3.1e-114
Identity = 204/308 (66.23%), Postives = 264/308 (85.71%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++   GK+  DRLVE+EEQ+L+L E+ D++RY+ESRLDEIS K + ID V  R++G  
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFP 60

Query: 61  IRELMLRVETLEDKVK--RTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+ELM RV+ LE  +   RT N ERG+SS+ S+AH+EERV+E+D SQKT+++M++ +++D
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           F+AT+D +R EIA +  +++LTMRA+ NQAPAGG I  ++VK+P+PKPFCGARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYF+AT+TVTEE+KVTLATMHL++DAKLWWR+R+VD+QEG+CTIDTW+ LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEILARRKLREL+HTG+IR+YVKQF+GLMLDI DMSEKDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWA 300

Query: 301 RPNCMNRR 307
           +     +R
Sbjct: 301 KTKLYEQR 308

[Close]

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 2.8e-121
Identity = 242/299 (80.94%), Postives = 250/299 (83.61%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS TKQLGKSH+DRLVEIEE+LLFLREI DNLRYVESRLDEISTKADGIDVVN RIDGLA
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDDFK 120
           IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDIS+KTIVQMVSELTDDFK
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISKKTIVQMVSELTDDFK 120

Query: 121 ATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALENFI 180
           AT+DEMRAEIA+LGT                             KPFCGARDAKALENFI
Sbjct: 121 ATVDEMRAEIAELGT-----------------------------KPFCGARDAKALENFI 180

Query: 181 FDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRS 240
           FDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRS
Sbjct: 181 FDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQELRS 240

Query: 241 QFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWAR 300
           Q    ++  +          TGNIRDYVKQFSGLMLDI DMSEKDKVFAFVEGLKPWAR
Sbjct: 241 Q----SINFVN-------YDTGNIRDYVKQFSGLMLDIRDMSEKDKVFAFVEGLKPWAR 259

[Close]

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL
Match: A0A5A7SZ91 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001280 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 6.5e-118
Identity = 226/387 (58.40%), Postives = 297/387 (76.74%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++   GK+  DRLVE+EEQ+L+L E+ D++RY+ESRL+EIS K + ID V  R++G  
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFP 60

Query: 61  IRELMLRVETLEDKVK--RTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+ELM RV+ LE  V   RT N ERG+SS+ S+AH+EERV+E+D SQKT+++M++ +++D
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           F+AT+D +R EIA +  +++LTMRA+ NQAPAGG I  ++VK+P+PKPFCGARDAKALEN
Sbjct: 121 FRATLDVIRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYF+AT+TVTEE+KVTLATMHL++DAKLWWR+R+VD+QEG+CTIDTW+ LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEIL RRKLREL+HTG+IR+YVKQF+GLMLDI DMS+KDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILTRRKLRELKHTGSIREYVKQFAGLMLDIRDMSDKDKVFCFVEGLKPWA 300

Query: 301 RPNCMNRRYKISLLLTQQPNGC-SILATIHHKSRGRPKLLPVVGTDPLDRGPLKLGELTE 360
           +     +R +       QPNGC + L T+  +   +   L  VGT    +  LKL E T+
Sbjct: 301 KTKLYEQRVQDLTSAYLQPNGCLTCLTTLKIRDVIQVPHLEEVGTTA--QVLLKLQEGTD 360

Query: 361 MEEETANPSSREREIHGEGRTHRTITI 385
              E  +P +R  E  GE +  R   I
Sbjct: 361 ALMEIVDPINRILETPGEDQVTRICPI 385

[Close]

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 6.8e-115
Identity = 205/308 (66.56%), Postives = 265/308 (86.04%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++  LGK+  DRLVE+EEQ+L+L E+ D++RY+ESRL+EIS K + ID V  R++G  
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IRELMLRVETLEDKVK--RTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+ELM RV+ LE  V   RT N ERG+SS+ S+AH+EERV+E+D SQKT+++M++ +++D
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           F+AT+D +R EIA +  +++LTMRA+ NQAPAGG I  ++VK+P+PKPFCGARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYF+AT+TVTEE+KVTLATMHL++DAKLWWR+R+VD+QEG+CTIDTW+ LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEILARRKLREL+HTG+IR+YVKQF+GLMLDI DMSEKDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWA 300

Query: 301 RPNCMNRR 307
           +     +R
Sbjct: 301 KTKLYEQR 308

[Close]

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL
Match: A0A5D3BV48 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001390 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 8.8e-115
Identity = 207/308 (67.21%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++   GK+  DRLVEIEEQ+L+L E+ D++RY+ESR+DEIS KA+ ID V  R++GL 
Sbjct: 1   MSSSNSSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IRELMLRVETLED--KVKRTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+EL+ RV+ LE+    +RT N ERGESSS   AHMEERV E+D +QKT+++M++ +++D
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFAAHMEERVSELDNTQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           FK T+D +R EIA +  +++LTMRA+ NQAPAGG I  +KVKVP+PKPFCGARDAKALEN
Sbjct: 121 FKVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAISVSKVKVPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYFKAT+T+ EE+KVTLATMHL++DAKLWWR+RYVD+QEG+CT+DTW+ LK+EL
Sbjct: 181 YIFDLEQYFKATNTIAEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEILARRKLR+LRHTG IR+YVKQF+GLMLDI DMSEKDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILARRKLRDLRHTGEIREYVKQFAGLMLDIRDMSEKDKVFYFVEGLKPWA 300

Query: 301 RPNCMNRR 307
           +     +R
Sbjct: 301 KAKLYEQR 308

[Close]

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL
Match: A0A5A7UT87 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00550 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 1.5e-114
Identity = 208/308 (67.53%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MSATKQLGKSHVDRLVEIEEQLLFLREILDNLRYVESRLDEISTKADGIDVVNVRIDGLA 60
           MS++   GK+  DRLVEIEEQ+L+L E+ D++RY+ESR+DEIS KA+ ID V  R++GL 
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IRELMLRVETLED--KVKRTDNLERGESSSSSIAHMEERVEEIDISQKTIVQMVSELTDD 120
           I+EL+ RV+ LE+    +RT N ERGESSS   AHMEERV E+D +QKT+++M++ +++D
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFAAHMEERVSELDNAQKTLLEMINGMSED 120

Query: 121 FKATIDEMRAEIAKLGTKVNLTMRAVGNQAPAGGPIQFNKVKVPKPKPFCGARDAKALEN 180
           FK T+D +R EIA +  +++LTMRA+ NQAPAGG I  +KVKVP+PKPFCGARDAKALEN
Sbjct: 121 FKVTLDVVRNEIADVNARLSLTMRAMANQAPAGGTISASKVKVPEPKPFCGARDAKALEN 180

Query: 181 FIFDLEQYFKATSTVTEESKVTLATMHLADDAKLWWRARYVDVQEGKCTIDTWEKLKQEL 240
           +IFDLEQYFKAT+TV EE+KVTLATMHL++DAKLWWR+RYVD+QEG+CT+DTW+ LK+EL
Sbjct: 181 YIFDLEQYFKATNTVAEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RSQFFPENVEILARRKLRELRHTGNIRDYVKQFSGLMLDIHDMSEKDKVFAFVEGLKPWA 300
           RSQFFPENVEILAR+KLR+LRHTG IR+YVKQF+GLMLDI DMSEKDKVF FVEGLKPWA
Sbjct: 241 RSQFFPENVEILARQKLRDLRHTGEIREYVKQFAGLMLDIRDMSEKDKVFYFVEGLKPWA 300

Query: 301 RPNCMNRR 307
           R     +R
Sbjct: 301 RAKLYEQR 308

The following BLAST results are available for this feature:

BLAST of Moc06g15740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	5.8e-121	80.94	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0036604.1	1.3e-117	58.40	polyprotein [Cucumis melo var. makuwa]	[more]
TYK03099.1	1.4e-114	66.56	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03044.1	1.8e-114	67.21	uncharacterized protein E5676_scaffold46G001390 [Cucumis melo var. makuwa]	[more]
TYK18566.1	3.1e-114	66.23	uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g15740.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	2.8e-121	80.94	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7SZ91	6.5e-118	58.40	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001280 P...	[more]
A0A5D3BYE6	6.8e-115	66.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BV48	8.8e-115	67.21	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UT87	1.5e-114	67.53	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Moc06g15740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..376
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 114..299
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 114..299
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 201..296 e-value: 5.6E-18 score: 65.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g15740	Moc06g15740	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g15740.1.exon1	Moc06g15740.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g15740.1	cds.Moc06g15740.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g15740.1	Moc06g15740.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding