Moc06g14010.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g14010.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 10972378 .. 10974079 (+)
Sequence length843
RNA-Seq ExpressionMoc06g14010.1
SyntenyMoc06g14010.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGGTTGAGCATATCCAGTCGGAGGGGCGAATCGCCCGAGAGGACGGCGGAGGAGAGGGCAACCTTTCGCATCGAGTTGGACCGCATTCAGTGTCGAGCGGTTGCAGCCAAAGCGCGTGTTGGTGTGCTCAAGGTAGAAGTGCGATCTCATTTGGCCCAAGTGGGTGAATCGGAGTCCCGCGCCAAGAACATCGATGAGGACCTTGAGATGGCTCGGGTGGAGGCGACTTCTCGTGACAGTCGGATCATCGAGCTGGAGTTGCGGCTTAAAGAGGCTAAAGACAGATCGCATAAGGAAGAAGAGGGACAAGTAATGGCTAAGTCCGATCTGTCGTTATGTAAGGAGGCCGAGGAGAATGCCTTGCATTCCTTGCAACGAGAGTATGCTTTAGTGCCAGCCTTGAGGTGGTTTTGGCTGATATTCTACGCTCCTTTGCTCAGGCTGGGTCGATTTTAGATGAACCCGAGCTCTTAGAGTCCCACTTTCACGACTCAGATGGCTTCTACGTGATGGAGGGAGACTTTCAACAGGCGGGGTGGACTTCGTGAGGGTTCGCCTACAGGAGCGGTGTTGGGATGAGGAATGAGGCGCATCCTTGACACTTTCGAGCGTATTTGGTCAATGCCTGGCAGTCATGAGTCTGAGAAGCACCTTCAACGTCTCATCTACGAAGGCCATAGCTACCATGATGCTCTATATGTGACAACTGCTCACTTTGCTCCTCGACCTTCTTATATTTATCAACTTTGTTTTTGCTACTTTTGTGCGTGGGACTTTATGATTGTCGCCCCGTCTACTGCTTTTTGTAATTTTTGGTTGTCTTTTTAATTAATGAGCGCAAGGCTAGTTTTTTCTGCCGTTTGTTTTACCAGTCTCGCTTTTTTAATTTTCTTCGATAGTTTCTTCCGCTCCCAGTGGCTTCCTTACCCATTTTCGTGGGAGGGAAGTTATTGTCGAACCTCGGAGACTGTCGTAGTTAGTCTTGCTCAGTAGGGGTATTTGCATCTACGCACTAGTAAACCAATTGTGAATAAACCCTTAACCTGAGTGGTGTCACGTGGCTGCTCAAACTCGGGAACTACCTTTGAACTTTGAGTGTTCTTGAGAGGACAGTGATACATTCGAGTGCGTGCCCTATTCGGGTCCTCTACCTGGGAAAATGCCTTAACATCAGTTCTCTAGAGGCTTGCACGCCGCCGAGAGGTGCACCATGGTCCAGTCTCGGGGGTAGCCTTGGAACGTTGAGGGTTCCTGAAAAGGCAGGACTACGTCCGAGTGGGAGACCTATTTGGGTTATTTACTCAGGGAAATGTCTTGGAACATCAGTTCTCCCAGGGCTTGCACGCAGCTGAGTGGTGCCACGTGGCTATCCAAACTCGGGGGCAGGCTTGAAACTTTGAACGTTCTTGAGAAGGCAGGAATATATAAGAGTGGGAGCCGTATTTGGGTCCTATACCTGGGGAAATGCCTTGAAACATTCATTCTCCAGAGGCTTTCACGCGGCCGAATGGTGCCACGTGGGCTATCTGAACTCGGGGACAACCTTGGAACTTTAAGTGTTCCTAAGAAGACAGGAATACTTTTGAGTGGGAGCCTTATTCGGGTCCCCCACACAGTGACACCCTTGGAACATCAGTTATCTAGAAGCTTGCACGCGACCGAGTGGTGCAACGTGGGCAATCCGGACTCGGAGTAG

mRNA sequence

ATGTCCAGGTTGAGCATATCCAGTCGGAGGGGCGAATCGCCCGAGAGGACGGCGGAGGAGAGGGCAACCTTTCGCATCGAGTTGGACCGCATTCAGTGTCGAGCGGTTGCAGCCAAAGCGCGTGTTGGTGTGCTCAAGGTAGAAGTGCGATCTCATTTGGCCCAAGTGGGTGAATCGGAGTCCCGCGCCAAGAACATCGATGAGGACCTTGAGATGGCTCGGGTGGAGGCGACTTCTCGTGACAGTCGGATCATCGAGCTGGAGTTGCGGCTTAAAGAGGCTAAAGACAGATCGCATAAGGAAGAAGAGGGACAAGTAATGGCTAAGTCCGATCTGTCGTTATGTAAGGAGGCCGAGGAGAATGCCTTGCATTCCTTGCAACGAGAGTATGCTTTAGTGCCAGCCTTGAGGACTACGTCCGAGTGGGAGACCTATTTGGGTTATTTACTCAGGGAAATGTCTTGGAACATCAGTTCTCCCAGGGCTTGCACGCAGCTGAGTGGTGCCACGTGGCTATCCAAACTCGGGGGCAGGCTTGAAACTTTGAACGTTCTTGAGAAGGCAGGAATATATAAGAGTGGGAGCCGTATTTGGGTCCTATACCTGGGGAAATGCCTTGAAACATTCATTCTCCAGAGGCTTTCACGCGGCCGAATGGTGCCACGTGGGCTATCTGAACTCGGGGACAACCTTGGAACTTTAAGTGTTCCTAAGAAGACAGGAATACTTTTGAGTGGGAGCCTTATTCGGGTCCCCCACACAGTGACACCCTTGGAACATCAGTTATCTAGAAGCTTGCACGCGACCGAGTGGTGCAACGTGGGCAATCCGGACTCGGAGTAG

Coding sequence (CDS)

ATGTCCAGGTTGAGCATATCCAGTCGGAGGGGCGAATCGCCCGAGAGGACGGCGGAGGAGAGGGCAACCTTTCGCATCGAGTTGGACCGCATTCAGTGTCGAGCGGTTGCAGCCAAAGCGCGTGTTGGTGTGCTCAAGGTAGAAGTGCGATCTCATTTGGCCCAAGTGGGTGAATCGGAGTCCCGCGCCAAGAACATCGATGAGGACCTTGAGATGGCTCGGGTGGAGGCGACTTCTCGTGACAGTCGGATCATCGAGCTGGAGTTGCGGCTTAAAGAGGCTAAAGACAGATCGCATAAGGAAGAAGAGGGACAAGTAATGGCTAAGTCCGATCTGTCGTTATGTAAGGAGGCCGAGGAGAATGCCTTGCATTCCTTGCAACGAGAGTATGCTTTAGTGCCAGCCTTGAGGACTACGTCCGAGTGGGAGACCTATTTGGGTTATTTACTCAGGGAAATGTCTTGGAACATCAGTTCTCCCAGGGCTTGCACGCAGCTGAGTGGTGCCACGTGGCTATCCAAACTCGGGGGCAGGCTTGAAACTTTGAACGTTCTTGAGAAGGCAGGAATATATAAGAGTGGGAGCCGTATTTGGGTCCTATACCTGGGGAAATGCCTTGAAACATTCATTCTCCAGAGGCTTTCACGCGGCCGAATGGTGCCACGTGGGCTATCTGAACTCGGGGACAACCTTGGAACTTTAAGTGTTCCTAAGAAGACAGGAATACTTTTGAGTGGGAGCCTTATTCGGGTCCCCCACACAGTGACACCCTTGGAACATCAGTTATCTAGAAGCTTGCACGCGACCGAGTGGTGCAACGTGGGCAATCCGGACTCGGAGTAG

Protein sequence

MSRLSISSRRGESPERTAEERATFRIELDRIQCRAVAAKARVGVLKVEVRSHLAQVGESESRAKNIDEDLEMARVEATSRDSRIIELELRLKEAKDRSHKEEEGQVMAKSDLSLCKEAEENALHSLQREYALVPALRTTSEWETYLGYLLREMSWNISSPRACTQLSGATWLSKLGGRLETLNVLEKAGIYKSGSRIWVLYLGKCLETFILQRLSRGRMVPRGLSELGDNLGTLSVPKKTGILLSGSLIRVPHTVTPLEHQLSRSLHATEWCNVGNPDSE
Homology
[Close]
BLAST of Moc06g14010.1 vs. NCBI nr
Match: XP_022149800.1 (uncharacterized protein LOC111018146 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-06
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 0 

Query: 25  RIELDRIQCRAVAAKARVGVLKVEVRSHLAQVGESESRAKNIDEDLEMARVEATSRDSRI 84
           R+++   +  A   + RV +L+ E+     +    ES    I++DLEMA+ EA   D+RI
Sbjct: 18  RVKMAGAREDASKVEERVALLRTELVCTQRREATVESYVSGIEKDLEMAKAEAFVCDARI 77

Query: 85  IELELRLKEAKDRSHKEEEGQVMAKSDLSLCKEAEENALHSLQREYALVPALRTTSE 142
            ELE RL +A+DR  K EEG  +A+SDL   KEAE   L SL RE A   +L+   E
Sbjct: 78  AELESRLLDAEDRLFKAEEGDPLAESDLVKSKEAEGTTLDSLGRESASATSLKIALE 134

[Close]
BLAST of Moc06g14010.1 vs. ExPASy TrEMBL
Match: A0A6J1D6R6 (uncharacterized protein LOC111018146 OS=Momordica charantia OX=3673 GN=LOC111018146 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.0e-07
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 0 

Query: 25  RIELDRIQCRAVAAKARVGVLKVEVRSHLAQVGESESRAKNIDEDLEMARVEATSRDSRI 84
           R+++   +  A   + RV +L+ E+     +    ES    I++DLEMA+ EA   D+RI
Sbjct: 18  RVKMAGAREDASKVEERVALLRTELVCTQRREATVESYVSGIEKDLEMAKAEAFVCDARI 77

Query: 85  IELELRLKEAKDRSHKEEEGQVMAKSDLSLCKEAEENALHSLQREYALVPALRTTSE 142
            ELE RL +A+DR  K EEG  +A+SDL   KEAE   L SL RE A   +L+   E
Sbjct: 78  AELESRLLDAEDRLFKAEEGDPLAESDLVKSKEAEGTTLDSLGRESASATSLKIALE 134

The following BLAST results are available for this feature:
BLAST of Moc06g14010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149800.11.5e-0640.17uncharacterized protein LOC111018146 [Momordica charantia][more]
BLAST of Moc06g14010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g14010.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D6R67.0e-0740.17uncharacterized protein LOC111018146 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
BLAST of Moc06g14010.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..104

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc06g14010Moc06g14010gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc06g14010.1.exon1Moc06g14010.1.exon1exon
Moc06g14010.1.exon2Moc06g14010.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc06g14010.1cds.Moc06g14010.1CDS
cds.Moc06g14010.1cds.Moc06g14010.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc06g14010.1Moc06g14010.1-proteinpolypeptide