Moc05g25600.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g25600.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein SRC1
Location	chr5: 18144780 .. 18145082 (+)
Sequence length	303
RNA-Seq Expression	Moc05g25600.1
Synteny	Moc05g25600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGATTCATCGAGAAAATTGAAGAGAAGCTCCACATCGGAGGGGGCCATAAGGGCGACGAGCACCACAAGAGCGGGGATCACCACAAGGGCGACGATCACCACAAGAGCGGCGAGCACGGCGCCAAGGCGGGGGAGCACCACAAGGAGGGGATTGTGGATAAGATCAAGGACAAGATCCACGGCGACGGACACGACCACGACCACAAAGGCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGCGAGCACCACCACGGCGGCCACAGCAGCAGCGACAGCGATAGCGACTGA

mRNA sequence

ATGTCAGGATTCATCGAGAAAATTGAAGAGAAGCTCCACATCGGAGGGGGCCATAAGGGCGACGAGCACCACAAGAGCGGGGATCACCACAAGGGCGACGATCACCACAAGAGCGGCGAGCACGGCGCCAAGGCGGGGGAGCACCACAAGGAGGGGATTGTGGATAAGATCAAGGACAAGATCCACGGCGACGGACACGACCACGACCACAAAGGCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGCGAGCACCACCACGGCGGCCACAGCAGCAGCGACAGCGATAGCGACTGA

Coding sequence (CDS)

ATGTCAGGATTCATCGAGAAAATTGAAGAGAAGCTCCACATCGGAGGGGGCCATAAGGGCGACGAGCACCACAAGAGCGGGGATCACCACAAGGGCGACGATCACCACAAGAGCGGCGAGCACGGCGCCAAGGCGGGGGAGCACCACAAGGAGGGGATTGTGGATAAGATCAAGGACAAGATCCACGGCGACGGACACGACCACGACCACAAAGGCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGCGAGCACCACCACGGCGGCCACAGCAGCAGCGACAGCGATAGCGACTGA

Protein sequence

MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD

Homology

[Close]

BLAST of Moc05g25600.1 vs. NCBI nr
Match: XP_022158601.1 (protein SRC1 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 9.7e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK
Sbjct: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60

Query: 61  IHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 101
           IHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD
Sbjct: 61  IHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 100

[Close]

BLAST of Moc05g25600.1 vs. NCBI nr
Match: XP_022973362.1 (protein SRC1-like [Cucurbita maxima] >XP_022975607.1 protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK GDHH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGH-SSSDSDSD 101
           KDKIHG G  HD KGEKKKKK++KKK+GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Moc05g25600.1 vs. NCBI nr
Match: XP_022974702.1 (protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-19
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK G+HH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGH-SSSDSDSD 101
           KDKIHG G  HD KGEKKKKK++KKK+GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Moc05g25600.1 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 7.7e-19
Identity = 70/105 (66.67%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHH--KSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIK 60
           MSGFIEKI EKLHIGG H   EHH    G+HH  D+H K G+     GE HKEG+++KIK
Sbjct: 1   MSGFIEKIGEKLHIGGDHNKGEHHDGHKGEHH--DEHKKHGKSEEHHGEGHKEGLIEKIK 60

Query: 61  DKIHGDGHDHDHKGEKKKK-KEKKKKEGEHHH--GGHSSSDSDSD 101
           DKIHG   DHD KGEKKKK K++KKK+GEHHH  GGHSSSDSDSD
Sbjct: 61  DKIHG---DHDEKGEKKKKEKKEKKKKGEHHHHDGGHSSSDSDSD 100

[Close]

BLAST of Moc05g25600.1 vs. NCBI nr
Match: XP_023538905.1 (protein SRC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-18
Identity = 71/108 (65.74%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGD---EHHKSGDH-HKGDDHHKSGEHGAKA---GEHHKEGI 60
           MSG +EKI EKLHIGG HKG+   EHH+   H H+ D H    +HG K+   GE HKEG+
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKDKHEHEKKHGEKSEHHGEGHKEGL 60

Query: 61  VDKIKDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGH-SSSDSDSD 101
           ++KIKDKIHG  H HD KGEKKKKKEKKKK GEHH GGH SSSDSDSD
Sbjct: 61  MEKIKDKIHGGDH-HDEKGEKKKKKEKKKK-GEHHEGGHSSSSDSDSD 106

[Close]

BLAST of Moc05g25600.1 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18
Identity = 70/111 (63.06%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDH---HKGDDHHKSGEHGAKAGEH--------H 60
           MSG I KIEE LH+ GGHK +EH   G+H   HKG+  HK   HG   GEH        H
Sbjct: 1   MSGIIHKIEETLHV-GGHKKEEH--KGEHHGEHKGE--HKGEHHGEHKGEHKGEQHHGEH 60

Query: 61  KEGIVDKIKDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 101
           KEG+VDKIKDKIHGDGHD   KGEKKKKK+KKKKE  H H GHSSS SDSD
Sbjct: 61  KEGLVDKIKDKIHGDGHD---KGEKKKKKDKKKKEHGHDHHGHSSS-SDSD 102

[Close]

BLAST of Moc05g25600.1 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.3e-16
Identity = 61/106 (57.55%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           M+G I KI + LHIGGG+K  EH K  +H K  D HKSGE        HKEGIVDKIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGE--------HKEGIVDKIKDK 60

Query: 61  IHG------DGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 101
           IHG      DG    H GEKKKKK+KK+K  +HH  GH SS SDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEK--KHHDDGHHSSSSDSD 96

[Close]

BLAST of Moc05g25600.1 vs. ExPASy TrEMBL
Match: A0A6J1E1E0 (protein SRC1 OS=Momordica charantia OX=3673 GN=LOC111025058 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.7e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK
Sbjct: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60

Query: 61  IHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 101
           IHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD
Sbjct: 61  IHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 100

[Close]

BLAST of Moc05g25600.1 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.8e-20
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK GDHH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGH-SSSDSDSD 101
           KDKIHG G  HD KGEKKKKK++KKK+GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Moc05g25600.1 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK G+HH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGH-SSSDSDSD 101
           KDKIHG G  HD KGEKKKKK++KKK+GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Moc05g25600.1 vs. ExPASy TrEMBL
Match: A0A7N0VKE9 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEH-----GAKAGEHHKEGIVD 60
           MSG + KI + LHIGG  K +EHHK+ +HHK D+HHK+ EH     G K+GE HKEG++D
Sbjct: 1   MSGIMNKIGDALHIGGDKKAEEHHKAEEHHKADEHHKADEHHKAEEGHKSGE-HKEGLLD 60

Query: 61  KIKDKIHGDGH--DHDHKGEKKKKKEKKKKEGE-HHHGGHSSSDSDSD 101
           KIKDKIHGDG      H+GEKKKK++KKKKEGE  H GG SSS SDSD
Sbjct: 61  KIKDKIHGDGEKSGEHHEGEKKKKEKKKKKEGEKKHDGGDSSSSSDSD 107

[Close]

BLAST of Moc05g25600.1 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 70/104 (67.31%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           M+G +EKI EKLHIGG HKG+  HK G+HH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGE--HK-GEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEKKKKKEKKKKEGEHHHGGH-SSSDSDSD 101
           KDKIHGD   HD KGEKKKKKEKKKK GEHH GGH SSSDSDSD
Sbjct: 61  KDKIHGD--HHDEKGEKKKKKEKKKK-GEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Moc05g25600.1 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-17
Identity = 61/106 (57.55%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           M+G I KI + LHIGGG+K  EH K  +H K  D HKSGE        HKEGIVDKIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGE--------HKEGIVDKIKDK 60

Query: 61  IHG------DGHDHDHKGEKKKKKEKKKKEGEHHHGGHSSSDSDSD 101
           IHG      DG    H GEKKKKK+KK+K  +HH  GH SS SDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEK--KHHDDGHHSSSSDSD 96

The following BLAST results are available for this feature:

BLAST of Moc05g25600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158601.1	9.7e-46	100.00	protein SRC1 [Momordica charantia]	[more]
XP_022973362.1	2.0e-19	66.35	protein SRC1-like [Cucurbita maxima] >XP_022975607.1 protein SRC1-like [Cucurbit...	[more]
XP_022974702.1	5.9e-19	65.38	protein SRC1-like [Cucurbita maxima]	[more]
XP_038903205.1	7.7e-19	66.67	protein SRC1 [Benincasa hispida]	[more]
XP_023538905.1	5.0e-18	65.74	protein SRC1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc05g25600.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	1.4e-18	63.06	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	8.3e-16	57.55	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of Moc05g25600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1E0	4.7e-46	100.00	protein SRC1 OS=Momordica charantia OX=3673 GN=LOC111025058 PE=4 SV=1	[more]
A0A6J1I7B7	9.8e-20	66.35	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]
A0A6J1IAZ2	2.9e-19	65.38	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A7N0VKE9	2.4e-18	62.04	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A6J1FQD3	2.4e-18	67.31	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]

BLAST of Moc05g25600.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	5.9e-17	57.55	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..100
None	No IPR available	PANTHER	PTHR34941:SF4	PROTEIN SRC1	coord: 1..100
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc05g25600	Moc05g25600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc05g25600.1.exon1	Moc05g25600.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc05g25600.1	cds.Moc05g25600.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc05g25600.1	Moc05g25600.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding