Moc05g13020.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13020.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr5: 10043929 .. 10048192 (+)
Sequence length	1599
RNA-Seq Expression	Moc05g13020.1
Synteny	Moc05g13020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGCCAGCGAACTCTGCCAATACGACAGAACGGAGAGGTTTGAACACTGGCAATGGCACTCAGCGTGACCTCGACGCTGGAATAGTAGAAGACCAAGTCCGAGCAGGGCAAGAGGAAGATCTGCCGCAGAGATCTGCTCGCCATGCGAATCAAGAACGATCTCCCGTTCACCCTATCCCTCAAAAGTTTAAAACGCCCGCGATGAAGCCGTACGATGGGTCCAAGGACCCAAAAGATTATGTTGAGGTCTTTGAAGGTCTCATGGACTTCCAAGCGGCCTCAGACACCATTAAATGCCTAGCTTTTCAGATCGTTCTCACGGGGAGTGCTCGACTCTGGTATTGAAGCATGCCGACAAGGTCGATCTCGACCTATAGTCAGCTGAGGAAAGAATTCATCAACCAATTCTCTTCTCGGCACTATGACAGGAAAACAGCCACTCATCTTGCCACCGTCCGATAAAAAGAAGGCGAAACTTTAAGGGAGTACGTGACCCGTTTTCAAGAGGAACAACTCAATGTTGCGCATTGCTCCGATGATTCGGCTATGTGCTACTTCCTCACTGGCCTGGCCGATCTTTGACAGTCAAGTTGGGCGAGGAAGCATCGTCAACCTTCGTCGAGGTCTTTCAGAAGGCCAAGAAGGTTATAGACGGACAAGAACTACTCAGAACCAAATTAGGCCGAACAGACGGAAAGTCCGACCAGAAAAAGTCAGGGGCCCAAGAAAAGGGGAAGTTCGACTCAAAGTCTAAGGACAATGGGTCATCTTCTCAAGGATGAACTGACTACAAGAGGTCCGACTCGGACTCCAGCCAGAGGGCACCTTATGAAAGATACACCCCAACCACCATTCCGATCTCTAAGATTTTAACCAATATCGAGGAGAACGATTTGGATAAACTCCTCAAACGGCCTGATAAACTTAGAGGAGACCCAGAGAAAAGCAATAAAGACAGGTACTGCCATTTTCATCGCGATCACGGTCATGATACCTCGAATTGCTGGGAGTTGAAGTGCCAGATTGAAGACCTGATTCAAGATGGCTACTTCAAGAAGTATGTTGGCAAGCCGGGCTCCGGCTCGACAGGTAAGAAAAAAGAAAGGAAGCGTTCGAGGACGCCAACTTGGAGAGATGACCGACCTGCGGTCATCAGCACCATCTTTGGCGGCCCAAGTGGGGGCCAGTCTGGAAATAAAAGAAAGGAGTTAGCTAGGGAAGCACGTTGAGAAGTCTGTAGTATTCGCGAGCAAAAACCGATCTGCCTTATCTCCTTCTCTGACTCTGATCTGGAAGGGGTGCACTTGCCCCCACAATGACGCTTTGGTGATCTCACCAATGATAGGTCATATCTAGGTCAGGAGGGTTCTAGTGGATGGGGGCGCCTCCGCCAACATTTTGTCTCTCACCACGTACCTAACACTAGGGTGGACCAGGGCGCAGCTAAAAAAAAGCCCAACCTCTTTGGTGGGATTTGCGGGTGAGTCTGTCACCCCGGAAGGTTACACAGATCTTCCCATCACTCTCGGCCAAGATGATACCCAAGTCACTCAGATGGTTGAGTTCGTGGTGGTAGATGGTAGGTTGGCCTACAATGCCATATTTGGATGACCTATCATTCATTCACTGCGTGCCATCTCATCGACTCTACACCAGGCCATGAAGTACTCTACAGTCAATGGGGTTGGCATATTCCGAGGTGAACAGAAAGCATCACGTGAGTGCTATACCTCAGCTCTAAAGGGGGCAGCGGTCTGCGCCCAAGAAGAGGCGAAAAGCTTCCAAGACCGGTAGTTCAAGCTTCCGAGGACGAACTACCCAAAGCCGTTCAGCGTGAGGTAGCTGCGCCTACTGAAGAACTGGAGCTTGTCCCCCTACTCAGCCCGGATAAACAGGTGAGCATATGCACCAAGCTGGGGACCGCGGCCAGGGAAGAGCTTATCTCCTTCCTCAGGGCGAACTTTGATGTGTTTGCATGGTCTCACGAGGACATGTCAGGCATCGATCCAAAAATAATGGTCCACCGCCTCAACATTGACCCATCATTCCGACCTATTAAGCAAAAAATGGAGACCTGTAAATAGGGAGAGGAGTGATGTAATTGTTAAGGAAGTAAACAAACTTTTAAAAGCGGAATACATAAAAGAAATTTTGTATCCCGAGTGGCTCTCTAACGTTGTCTTAGTTAAAATATCTAACGAAAAATGGAGAATGTGCGTAGATTTCACCAATCTTAACAAGACATGTTCAAAAGATTGTTTTCCACTTCCGAGGATCGACCAGCTTGTGGATGCAACGGCCGGGCACGAGCTGCTCACGTTTATGGACGCCTACTCAGGGTACAACCAAATAAAGATGCACAAGCCAGATCAGACCCACACTTCCTTCATAATCGATCAAGGTTTATACTGCTACAAGGTTATGCCCTTCGGTTTAAGAAACGTAGAGGCAACTTACCAAAGAATGGTGAACAAGATGTTTGCTAACCAGATCGGACGTAATATGGAAGTCTATGTGGATGACATGCTGGTGAAGAGCAAACAGTCCAGGTCGCACTTGGCCGACCTAACTGAGGCCTTTGAGGTACTTCGAAGATTCTAGATGAAGTTGAATCCTGCCAAGTGTGCTTTTGGAGTTTCATCTGGCAAGTTCCTAGGCTTCATGGTTAATAACTGTGAATTGAGGCCAACCCAGAAAAGATAAAGGCCATTCTTGAGATGCAGGCGCCAAGGACCCTTAAGCAGCTACAATGCCTTAATGGGAGAATCGCCGCCCTCAACCGGTTCGTCTCCAGGTCTACCGACAAGTGCATTCCCTTCTTCAAGATGCTAAGGACGAAGGGGTCATTTGAGTGAACAGACGAGTGTGAGGCCGCTTTCGAAAAACTCAAAGACTATCTCTCCTCGGCACCATTACTCACAAAGCCAATGCCATGAGACAAATTATACTTGTACTTGGCTGTTTCAGAGAACGCAGTCAGCTCGGCCCTGGTTAAGCAAGATGGAACGCAACAGAGCTCTATCTATTACACGAGCAAAGCCATGACCGAGGCCGAGACAAGGTATCCCCAGATGGAGAAGCTTGCCCTCGCCTTGGTCACATCGGCACAAAGACTAAGACCGTACTCCAAGCTCATACCGTGACTATGCTCACCAACGTTCCCTTGAAGCAGGTTTTCCACAAGCCAAAAACGTCGAGACGTTTGATGAAGTGGGTCGTAGAGTTAAGCGAGTACGACATCTAGTTCGAGCCCCGAACGGCCGTAAAAGGGCAAGTTGTTGCAGACTTCATAGCCGAGCTCACTCCTCCATCAGCTCAAACCTCCACACCTGGTCAGCCTTGGACAGTGTACGTGGATGGGTCTTCGAATGAGAAAAGATGTGGAGCAGGTGTGCTTCTCCTTGCCCCAGATGGCATGCGCTTTGAATACGCCCTACGCTTCAACTTTCGCACTTCAAACAATGAAGCCGAGTACGAAGCCTTGTTGGCCGGACTACACATGGCCAAAGGGTTGGGGGCCACCCATCTTCTTATTTTCAGTGATTCACAACTGATAGTGAATCAAATTAGGGAAGATTATCAGACAAAAGACCCTCGGATGGAGAAGTATCTGGGAAAGATCAGGTCCCACCTCGCTTACTTCCAAACCTATGAAATTAGTTAGATTCCGAGGTTAAAAAATTCCAATGCCGACGTCTTGGCCAAGTTAGCGTCAGCATATGAGACCGATCTAGCGAGGTCGGTCCCTGTGGAAATTTTGGATAATCCTTCTATTCTGGAGCCGGACTTGATGGAGATCGACTCCCACCCCTCATCGTGTATGGAGCCGATAAAAGACTTCTTAGGGGGAAAGGTTCCAGCAGACCCAAGAGAAACCAAGAAGATAACAAGGAAGACAGCTCGGTACTTGCTCCAAGATGGAACCTTGTACCGGCGCGACTTTTCCTTGCCCCTTCTTAAGTGTATTTCCAAAGAAGATGGACAATATGTTCTTAGGGAAGTTCATGAGGGTGTCTGTGGTAACCATTCAGGGGCTAGATCTTTGTCGGCAAAGGTTGTGTGTCAAGACTAGTACTGGCCCACAATTTATCGAGATGCAAAGGAGTTCATGAAGGCATGTGACAATTGTTAGCGCTTTGCAAACCTCGTCCACCAGCCTGCTGAGTTGCTTACCCCGATCTCGGCACCTTGGCCCTTTGCACAATGGGGAGTTGACCTTATCGGACCCTTCCCGTTGAATAAGGGACAAGCCACGTAG

mRNA sequence

ATGGTGCAGCCAGCGAACTCTGCCAATACGACAGAACGGAGAGGTTTGAACACTGGCAATGGCACTCAGCGTGACCTCGACGCTGGAATAGTAGAAGACCAAGTCCGAGCAGGGCAAGAGGAAGATCTGCCGCAGAGATCTGCTCGCCATGCGAATCAAGAACGATCTCCCGTTCACCCTATCCCTCAAAAGTTTAAAACGCCCGCGATGAAGCCGTACGATGGGTCCAAGGACCCAAAAGATTATGTTGAGGTCTTTGAAGGTCTCATGGACTTCCAAGCGGCCTCAGACACCATTAAATGCCTAGCTTTTCAGATCGTTCTCACGGGGAGTGCTCGACTCTGGTCCGACTCGGACTCCAGCCAGAGGGCACCTTATGAAAGATACACCCCAACCACCATTCCGATCTCTAAGATTTTAACCAATATCGAGGAGAACGATTTGGATAAACTCCTCAAACGGCCTGATAAACTTAGAGGAGACCCAGAGAAAAGCAATAAAGACAGGTACTGCCATTTTCATCGCGATCACGGTCATGATACCTCGAATTGCTGGGAGTTGAAGTGCCAGATTGAAGACCTGATTCAAGATGGCTACTTCAAGAAGTATGTTGGCAAGCCGGGCTCCGGCTCGACAGGTAAGAAAAAAGAAAGGAAGCGTTCGAGGACGCCAACTTGGAGAGATGACCGACCTGCGGTCAGGAGGGTTCTAGTGGATGGGGGCGCCTCCGCCAACATTTTGTCTCTCACCACGTACCTAACACTAGGGTGGACCAGGGCGCAGCTAAAAAAAAGCCCAACCTCTTTGGTGGGATTTGCGGGTGAGTCTGTCACCCCGGAAGGTTACACAGATCTTCCCATCACTCTCGGCCAAGATGATACCCAAGTCACTCAGATGGTTGAGTTCGTGGTGGTAGATGGTAGCTCTAAAGGGGGCAGCGGTCTGCGCCCAAGAAGAGGCGAAAAGCTTCCAAGACCGGTAGTTCAAGCTTCCGAGGACGAACTACCCAAAGCCGTTCAGCGTGAGGTAGCTGCGCCTACTGAAGAACTGGAGCTTGTCCCCCTACTCAGCCCGGATAAACAGATTCCGAGGTTAAAAAATTCCAATGCCGACGTCTTGGCCAAGTTAGCGTCAGCATATGAGACCGATCTAGCGAGGTCGGTCCCTGTGGAAATTTTGGATAATCCTTCTATTCTGGAGCCGGACTTGATGGAGATCGACTCCCACCCCTCATCGTGTATGGAGCCGATAAAAGACTTCTTAGGGGGAAAGGTTCCAGCAGACCCAAGAGAAACCAAGAAGATAACAAGGAAGACAGCTCGGTACTTGCTCCAAGATGGAACCTTGTACCGGCGCGACTTTTCCTTGCCCCTTCTTAAGTGTATTTCCAAAGAAGATGGACAATATGTTCTTAGGGAAGTTCATGAGGGTGTCTGTGGTAACCATTCAGGGGCTAGATCTTTGTCGGCAAAGCGCTTTGCAAACCTCGTCCACCAGCCTGCTGAGTTGCTTACCCCGATCTCGGCACCTTGGCCCTTTGCACAATGGGGAGTTGACCTTATCGGACCCTTCCCGTTGAATAAGGGACAAGCCACGTAG

Coding sequence (CDS)

ATGGTGCAGCCAGCGAACTCTGCCAATACGACAGAACGGAGAGGTTTGAACACTGGCAATGGCACTCAGCGTGACCTCGACGCTGGAATAGTAGAAGACCAAGTCCGAGCAGGGCAAGAGGAAGATCTGCCGCAGAGATCTGCTCGCCATGCGAATCAAGAACGATCTCCCGTTCACCCTATCCCTCAAAAGTTTAAAACGCCCGCGATGAAGCCGTACGATGGGTCCAAGGACCCAAAAGATTATGTTGAGGTCTTTGAAGGTCTCATGGACTTCCAAGCGGCCTCAGACACCATTAAATGCCTAGCTTTTCAGATCGTTCTCACGGGGAGTGCTCGACTCTGGTCCGACTCGGACTCCAGCCAGAGGGCACCTTATGAAAGATACACCCCAACCACCATTCCGATCTCTAAGATTTTAACCAATATCGAGGAGAACGATTTGGATAAACTCCTCAAACGGCCTGATAAACTTAGAGGAGACCCAGAGAAAAGCAATAAAGACAGGTACTGCCATTTTCATCGCGATCACGGTCATGATACCTCGAATTGCTGGGAGTTGAAGTGCCAGATTGAAGACCTGATTCAAGATGGCTACTTCAAGAAGTATGTTGGCAAGCCGGGCTCCGGCTCGACAGGTAAGAAAAAAGAAAGGAAGCGTTCGAGGACGCCAACTTGGAGAGATGACCGACCTGCGGTCAGGAGGGTTCTAGTGGATGGGGGCGCCTCCGCCAACATTTTGTCTCTCACCACGTACCTAACACTAGGGTGGACCAGGGCGCAGCTAAAAAAAAGCCCAACCTCTTTGGTGGGATTTGCGGGTGAGTCTGTCACCCCGGAAGGTTACACAGATCTTCCCATCACTCTCGGCCAAGATGATACCCAAGTCACTCAGATGGTTGAGTTCGTGGTGGTAGATGGTAGCTCTAAAGGGGGCAGCGGTCTGCGCCCAAGAAGAGGCGAAAAGCTTCCAAGACCGGTAGTTCAAGCTTCCGAGGACGAACTACCCAAAGCCGTTCAGCGTGAGGTAGCTGCGCCTACTGAAGAACTGGAGCTTGTCCCCCTACTCAGCCCGGATAAACAGATTCCGAGGTTAAAAAATTCCAATGCCGACGTCTTGGCCAAGTTAGCGTCAGCATATGAGACCGATCTAGCGAGGTCGGTCCCTGTGGAAATTTTGGATAATCCTTCTATTCTGGAGCCGGACTTGATGGAGATCGACTCCCACCCCTCATCGTGTATGGAGCCGATAAAAGACTTCTTAGGGGGAAAGGTTCCAGCAGACCCAAGAGAAACCAAGAAGATAACAAGGAAGACAGCTCGGTACTTGCTCCAAGATGGAACCTTGTACCGGCGCGACTTTTCCTTGCCCCTTCTTAAGTGTATTTCCAAAGAAGATGGACAATATGTTCTTAGGGAAGTTCATGAGGGTGTCTGTGGTAACCATTCAGGGGCTAGATCTTTGTCGGCAAAGCGCTTTGCAAACCTCGTCCACCAGCCTGCTGAGTTGCTTACCCCGATCTCGGCACCTTGGCCCTTTGCACAATGGGGAGTTGACCTTATCGGACCCTTCCCGTTGAATAAGGGACAAGCCACGTAG

Protein sequence

MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHPIPQKFKTPAMKPYDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLWSDSDSSQRAPYERYTPTTIPISKILTNIEENDLDKLLKRPDKLRGDPEKSNKDRYCHFHRDHGHDTSNCWELKCQIEDLIQDGYFKKYVGKPGSGSTGKKKERKRSRTPTWRDDRPAVRRVLVDGGASANILSLTTYLTLGWTRAQLKKSPTSLVGFAGESVTPEGYTDLPITLGQDDTQVTQMVEFVVVDGSSKGGSGLRPRRGEKLPRPVVQASEDELPKAVQREVAAPTEELELVPLLSPDKQIPRLKNSNADVLAKLASAYETDLARSVPVEILDNPSILEPDLMEIDSHPSSCMEPIKDFLGGKVPADPRETKKITRKTARYLLQDGTLYRRDFSLPLLKCISKEDGQYVLREVHEGVCGNHSGARSLSAKRFANLVHQPAELLTPISAPWPFAQWGVDLIGPFPLNKGQAT

Homology

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BLAST of Moc05g13020.1 vs. NCBI nr
Match: XP_022152854.1 (uncharacterized protein LOC111020479 [Momordica charantia])

HSP 1 Score: 315.8 bits (808), Expect = 6.9e-82
Identity = 220/584 (37.67%), Postives = 247/584 (42.29%), Query Frame = 0


Query: 1   MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHP 60
           MVQPANS NT +RR L   +G QR++ A +VE Q       +   RSAR       P HP
Sbjct: 1   MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEPLCRSARITTPVLPPAHP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KPSKAESSYNPITPGVITREEFDQLKSKFDAQVEALKARCEKKESSFDDGDLGELSFSSD 120

Query: 121 -----IPQKFKTPAMKPYDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLW 180
                IP KFKTP MKPYDGSKDPKDYVEVFE LMDFQAA+D IKC AFQI LTGSARLW
Sbjct: 121 ILEALIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQAATDAIKCCAFQIALTGSARLW 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YRRLPARLISTYSQLRKEFISQFSSRHYDRKTPTHLATIRQKEGETLREYVTRFPEEQLK 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 VAHCSDDSAMCYFLTGLADETLTVKLREEAPATFAEVLQKTKKVIDGQELLRTKTGRPEK 300

Query: 301 ----------------------------------SDSDSSQRAPYERYTPTTIPISKILT 310
                                             S+S  +Q  PYE YTPTTIPI +ILT
Sbjct: 301 NIDQGRAGKDKGKADSKSRDKGPSSSSSRVDYRRSNSSHNQSRPYEHYTPTTIPIFEILT 360

[Close]

BLAST of Moc05g13020.1 vs. NCBI nr
Match: XP_022156638.1 (uncharacterized protein LOC111023488 [Momordica charantia])

HSP 1 Score: 313.9 bits (803), Expect = 2.6e-81
Identity = 206/441 (46.71%), Postives = 232/441 (52.61%), Query Frame = 0


Query: 1   MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHP 60
           MVQP  SANT ERR LN  N  Q +LDA + E+Q +AGQE D P+RS R+AN    P HP
Sbjct: 1   MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHP 60

Query: 61  IPQKFKT-----PAMKPYDGSK-----DPKDYVEVFE------GLMDF------------ 120
              K            P DG        P DY    E       L D             
Sbjct: 61  RSGKANRGRGGGTDDLPEDGDDLDPPIHPDDYEPAVENKGIDYSLRDHDLRKHLTATHLA 120

Query: 121 ---QAASDTIK---------------CL---AFQIVLTGSA------------------- 180
              Q   +T++               C    A    LTG A                   
Sbjct: 121 TIRQKEDETLREYVTRFKEEQLKVAHCFDDSAMCYFLTGLADETLTVKLGEEAPSTFAEV 180

Query: 181 ----------------------RLWSDSDSSQRAPYERYTPTTIPISKILTNIEENDLDK 240
                                 +  S+SDS++R PYERYTPTTI I +ILTNIEEN L+K
Sbjct: 181 LQKAKKVLDGQELLKTKLGQTDKRRSNSDSNRRGPYERYTPTTILIFEILTNIEENGLEK 240

Query: 241 LLKRPDKLRGDPEKSNKDRYCHFHRDHGHDTSNCWELKCQIEDLIQDGYFKKYVGKPGSG 300
           LLKRPDKLRG PEK +KDRYC FHRD GHDT +CWELK QIEDL+QDGYFKKYV KPG+ 
Sbjct: 241 LLKRPDKLRGHPEKCSKDRYCRFHRDDGHDTLSCWELKHQIEDLVQDGYFKKYVSKPGAS 300

Query: 301 STGKKKERKRSRTPTWRDDRPA-------------------------------------- 314
           S  KK+ERK S+TP  RDDRPA                                      
Sbjct: 301 SAQKKEERKHSKTPPRRDDRPAIINTIFGGPSGAQSGNKRKELAREARREVCTIQSRGRP 360

[Close]

BLAST of Moc05g13020.1 vs. NCBI nr
Match: XP_022157448.1 (uncharacterized protein LOC111024144 [Momordica charantia])

HSP 1 Score: 308.5 bits (789), Expect = 1.1e-79
Identity = 194/415 (46.75%), Postives = 207/415 (49.88%), Query Frame = 0


Query: 70  MKPYDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLW-------------- 129
           MKPYDG KDPKDYVEVFEGL+DFQAAS+ IKC AFQI LTG+ARLW              
Sbjct: 1   MKPYDGYKDPKDYVEVFEGLIDFQAASNAIKCRAFQIALTGNARLWYRRLSARSISTYSQ 60

Query: 130 ------------------------------------------------------------ 189
                                                                       
Sbjct: 61  LKKEFISQFSYRQYDRKTATHLATIRQKEGETLREYVTRFQKEQLKVAHCSDDSTMCYFF 120

Query: 190 ------------------------------------------------------------ 249
                                                                       
Sbjct: 121 TGLADETLTVKLGEEAPSTFAEVLQKAKKVIDGQELLKTKQGRTDKRSDQKKPGVQEKGK 180

Query: 250 --------------------SDSDSSQRAPYERYTPTTIPISKILTNIEENDLDKLLKRP 309
                               SDSDS+ R PYERYTPTTIPI KILTNIEEN L+KLLKRP
Sbjct: 181 SDSKFKDKGSSSQGRSDYKMSDSDSNWRGPYERYTPTTIPIFKILTNIEENGLEKLLKRP 240

[Close]

BLAST of Moc05g13020.1 vs. NCBI nr
Match: XP_022148920.1 (uncharacterized protein LOC111017470 [Momordica charantia])

HSP 1 Score: 298.9 bits (764), Expect = 8.7e-77
Identity = 179/358 (50.00%), Postives = 217/358 (60.61%), Query Frame = 0


Query: 1   MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHP 60
           MV PANSANTTERRG+N  NGTQRDLD  +VEDQ    +  +    +     Q+   V  
Sbjct: 1   MVHPANSANTTERRGVNADNGTQRDLDTRMVEDQTLTVKLGEEAPATFAEVLQKAKKVID 60

Query: 61  IPQKFKTPAMKP---YDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLWSD 120
             +  +T   +P    D  K  ++  +      D  ++S   +        T   RL  +
Sbjct: 61  GQELLRTKTGRPEKQIDQKKLSQEKKKADSKYRDKGSSSSASR--------TEYRRL--E 120

Query: 121 SDSSQRAPYERYTPTTIPISKILTNIEENDLDKLLKRPDKLRGDPEKSNKDRYCHFHRDH 180
           S  S+  PYERYTPTTIPIS+ILTNIEE+ ++KLLKRP+KL+GDPEK NKD+YC FHRDH
Sbjct: 121 SGPSRSRPYERYTPTTIPISEILTNIEESGMEKLLKRPEKLQGDPEKRNKDKYCRFHRDH 180

Query: 181 GHDTSNCWELKCQIEDLIQDGYFKKYVGKPGSGSTGKKKERKRSRTPTWRDDRPA----- 240
            H+T++CWELK QIE LIQDGYFKK+VGKP S S  KK++RKRSRTP  RDDRPA     
Sbjct: 181 DHNTTSCWELKRQIEGLIQDGYFKKFVGKPRSNSVEKKEKRKRSRTPPCRDDRPAVINTI 240

Query: 241 -------------------------------------------VRRVLVDGGASANILSL 300
                                                      V+RVLVDGGASANILSL
Sbjct: 241 FGGPSGGQSGNKRKELAREARREGIHLPHNDALVIAPLIDHVLVQRVLVDGGASANILSL 300

Query: 301 TTYLTLGWTRAQLKKSPTSLVGFAGESVTPEGYTDLPITLGQDDTQVTQMVEFVVVDG 308
            TYL LGWT++QLKKSPT L GF+ ESV+ EG  DLP+ +GQD TQVTQM EFVV+DG
Sbjct: 301 KTYLALGWTKSQLKKSPTPLAGFSRESVSLEGCIDLPVMIGQDATQVTQMAEFVVIDG 348

[Close]

BLAST of Moc05g13020.1 vs. NCBI nr
Match: XP_022143565.1 (uncharacterized protein LOC111013434 [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 8.1e-75
Identity = 146/171 (85.38%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 361 QIPRLKNSNADVLAKLASAYETDLARSVPVEILDNPSILEPDLMEIDSHPSSCMEPIKDF 420
           QIPR +NSN+D LAKLASAYETDLARSVPVEILDNPSILEPD+MEIDSHP S MEPIKDF
Sbjct: 107 QIPRSQNSNSDALAKLASAYETDLARSVPVEILDNPSILEPDMMEIDSHPPSWMEPIKDF 166

Query: 421 LGGKVPADPRETKKITRKTARYLLQDGTLYRRDFSLPLLKCISKEDGQYVLREVHEGVCG 480
           LGGKVPADPRETKK+TRK ARYLL+DGTLYRR F LPLLKCISKEDG YVLREVHEGVCG
Sbjct: 167 LGGKVPADPRETKKMTRKAARYLLRDGTLYRRGFCLPLLKCISKEDGYYVLREVHEGVCG 226

Query: 481 NHSGARSLSAKRFANLVHQPAELLTPISAPWPFAQWGVDLIGPFPLNKGQA 532
           NHS ARSLSAK        PAELL PISAPWPFAQWGV+LIGPFPL KGQA
Sbjct: 227 NHSRARSLSAK-------VPAELLIPISAPWPFAQWGVNLIGPFPLGKGQA 270

[Close]

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL
Match: A0A6J1DHB3 (uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020479 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.3e-82
Identity = 220/584 (37.67%), Postives = 247/584 (42.29%), Query Frame = 0


Query: 1   MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHP 60
           MVQPANS NT +RR L   +G QR++ A +VE Q       +   RSAR       P HP
Sbjct: 1   MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEPLCRSARITTPVLPPAHP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KPSKAESSYNPITPGVITREEFDQLKSKFDAQVEALKARCEKKESSFDDGDLGELSFSSD 120

Query: 121 -----IPQKFKTPAMKPYDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLW 180
                IP KFKTP MKPYDGSKDPKDYVEVFE LMDFQAA+D IKC AFQI LTGSARLW
Sbjct: 121 ILEALIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQAATDAIKCCAFQIALTGSARLW 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YRRLPARLISTYSQLRKEFISQFSSRHYDRKTPTHLATIRQKEGETLREYVTRFPEEQLK 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 VAHCSDDSAMCYFLTGLADETLTVKLREEAPATFAEVLQKTKKVIDGQELLRTKTGRPEK 300

Query: 301 ----------------------------------SDSDSSQRAPYERYTPTTIPISKILT 310
                                             S+S  +Q  PYE YTPTTIPI +ILT
Sbjct: 301 NIDQGRAGKDKGKADSKSRDKGPSSSSSRVDYRRSNSSHNQSRPYEHYTPTTIPIFEILT 360

[Close]

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL
Match: A0A6J1DR60 (uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023488 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-81
Identity = 206/441 (46.71%), Postives = 232/441 (52.61%), Query Frame = 0


Query: 1   MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHP 60
           MVQP  SANT ERR LN  N  Q +LDA + E+Q +AGQE D P+RS R+AN    P HP
Sbjct: 1   MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHP 60

Query: 61  IPQKFKT-----PAMKPYDGSK-----DPKDYVEVFE------GLMDF------------ 120
              K            P DG        P DY    E       L D             
Sbjct: 61  RSGKANRGRGGGTDDLPEDGDDLDPPIHPDDYEPAVENKGIDYSLRDHDLRKHLTATHLA 120

Query: 121 ---QAASDTIK---------------CL---AFQIVLTGSA------------------- 180
              Q   +T++               C    A    LTG A                   
Sbjct: 121 TIRQKEDETLREYVTRFKEEQLKVAHCFDDSAMCYFLTGLADETLTVKLGEEAPSTFAEV 180

Query: 181 ----------------------RLWSDSDSSQRAPYERYTPTTIPISKILTNIEENDLDK 240
                                 +  S+SDS++R PYERYTPTTI I +ILTNIEEN L+K
Sbjct: 181 LQKAKKVLDGQELLKTKLGQTDKRRSNSDSNRRGPYERYTPTTILIFEILTNIEENGLEK 240

Query: 241 LLKRPDKLRGDPEKSNKDRYCHFHRDHGHDTSNCWELKCQIEDLIQDGYFKKYVGKPGSG 300
           LLKRPDKLRG PEK +KDRYC FHRD GHDT +CWELK QIEDL+QDGYFKKYV KPG+ 
Sbjct: 241 LLKRPDKLRGHPEKCSKDRYCRFHRDDGHDTLSCWELKHQIEDLVQDGYFKKYVSKPGAS 300

Query: 301 STGKKKERKRSRTPTWRDDRPA-------------------------------------- 314
           S  KK+ERK S+TP  RDDRPA                                      
Sbjct: 301 SAQKKEERKHSKTPPRRDDRPAIINTIFGGPSGAQSGNKRKELAREARREVCTIQSRGRP 360

[Close]

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL
Match: A0A6J1DTD9 (uncharacterized protein LOC111024144 OS=Momordica charantia OX=3673 GN=LOC111024144 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.3e-80
Identity = 194/415 (46.75%), Postives = 207/415 (49.88%), Query Frame = 0


Query: 70  MKPYDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLW-------------- 129
           MKPYDG KDPKDYVEVFEGL+DFQAAS+ IKC AFQI LTG+ARLW              
Sbjct: 1   MKPYDGYKDPKDYVEVFEGLIDFQAASNAIKCRAFQIALTGNARLWYRRLSARSISTYSQ 60

Query: 130 ------------------------------------------------------------ 189
                                                                       
Sbjct: 61  LKKEFISQFSYRQYDRKTATHLATIRQKEGETLREYVTRFQKEQLKVAHCSDDSTMCYFF 120

Query: 190 ------------------------------------------------------------ 249
                                                                       
Sbjct: 121 TGLADETLTVKLGEEAPSTFAEVLQKAKKVIDGQELLKTKQGRTDKRSDQKKPGVQEKGK 180

Query: 250 --------------------SDSDSSQRAPYERYTPTTIPISKILTNIEENDLDKLLKRP 309
                               SDSDS+ R PYERYTPTTIPI KILTNIEEN L+KLLKRP
Sbjct: 181 SDSKFKDKGSSSQGRSDYKMSDSDSNWRGPYERYTPTTIPIFKILTNIEENGLEKLLKRP 240

[Close]

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL
Match: A0A6J1D4A4 (uncharacterized protein LOC111017470 OS=Momordica charantia OX=3673 GN=LOC111017470 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.2e-77
Identity = 179/358 (50.00%), Postives = 217/358 (60.61%), Query Frame = 0


Query: 1   MVQPANSANTTERRGLNTGNGTQRDLDAGIVEDQVRAGQEEDLPQRSARHANQERSPVHP 60
           MV PANSANTTERRG+N  NGTQRDLD  +VEDQ    +  +    +     Q+   V  
Sbjct: 1   MVHPANSANTTERRGVNADNGTQRDLDTRMVEDQTLTVKLGEEAPATFAEVLQKAKKVID 60

Query: 61  IPQKFKTPAMKP---YDGSKDPKDYVEVFEGLMDFQAASDTIKCLAFQIVLTGSARLWSD 120
             +  +T   +P    D  K  ++  +      D  ++S   +        T   RL  +
Sbjct: 61  GQELLRTKTGRPEKQIDQKKLSQEKKKADSKYRDKGSSSSASR--------TEYRRL--E 120

Query: 121 SDSSQRAPYERYTPTTIPISKILTNIEENDLDKLLKRPDKLRGDPEKSNKDRYCHFHRDH 180
           S  S+  PYERYTPTTIPIS+ILTNIEE+ ++KLLKRP+KL+GDPEK NKD+YC FHRDH
Sbjct: 121 SGPSRSRPYERYTPTTIPISEILTNIEESGMEKLLKRPEKLQGDPEKRNKDKYCRFHRDH 180

Query: 181 GHDTSNCWELKCQIEDLIQDGYFKKYVGKPGSGSTGKKKERKRSRTPTWRDDRPA----- 240
            H+T++CWELK QIE LIQDGYFKK+VGKP S S  KK++RKRSRTP  RDDRPA     
Sbjct: 181 DHNTTSCWELKRQIEGLIQDGYFKKFVGKPRSNSVEKKEKRKRSRTPPCRDDRPAVINTI 240

Query: 241 -------------------------------------------VRRVLVDGGASANILSL 300
                                                      V+RVLVDGGASANILSL
Sbjct: 241 FGGPSGGQSGNKRKELAREARREGIHLPHNDALVIAPLIDHVLVQRVLVDGGASANILSL 300

Query: 301 TTYLTLGWTRAQLKKSPTSLVGFAGESVTPEGYTDLPITLGQDDTQVTQMVEFVVVDG 308
            TYL LGWT++QLKKSPT L GF+ ESV+ EG  DLP+ +GQD TQVTQM EFVV+DG
Sbjct: 301 KTYLALGWTKSQLKKSPTPLAGFSRESVSLEGCIDLPVMIGQDATQVTQMAEFVVIDG 348

[Close]

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL
Match: A0A6J1CP53 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.9e-75
Identity = 146/171 (85.38%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 361 QIPRLKNSNADVLAKLASAYETDLARSVPVEILDNPSILEPDLMEIDSHPSSCMEPIKDF 420
           QIPR +NSN+D LAKLASAYETDLARSVPVEILDNPSILEPD+MEIDSHP S MEPIKDF
Sbjct: 107 QIPRSQNSNSDALAKLASAYETDLARSVPVEILDNPSILEPDMMEIDSHPPSWMEPIKDF 166

Query: 421 LGGKVPADPRETKKITRKTARYLLQDGTLYRRDFSLPLLKCISKEDGQYVLREVHEGVCG 480
           LGGKVPADPRETKK+TRK ARYLL+DGTLYRR F LPLLKCISKEDG YVLREVHEGVCG
Sbjct: 167 LGGKVPADPRETKKMTRKAARYLLRDGTLYRRGFCLPLLKCISKEDGYYVLREVHEGVCG 226

Query: 481 NHSGARSLSAKRFANLVHQPAELLTPISAPWPFAQWGVDLIGPFPLNKGQA 532
           NHS ARSLSAK        PAELL PISAPWPFAQWGV+LIGPFPL KGQA
Sbjct: 227 NHSRARSLSAK-------VPAELLIPISAPWPFAQWGVNLIGPFPLGKGQA 270

The following BLAST results are available for this feature:

BLAST of Moc05g13020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152854.1	6.9e-82	37.67	uncharacterized protein LOC111020479 [Momordica charantia]	[more]
XP_022156638.1	2.6e-81	46.71	uncharacterized protein LOC111023488 [Momordica charantia]	[more]
XP_022157448.1	1.1e-79	46.75	uncharacterized protein LOC111024144 [Momordica charantia]	[more]
XP_022148920.1	8.7e-77	50.00	uncharacterized protein LOC111017470 [Momordica charantia]	[more]
XP_022143565.1	8.1e-75	85.38	uncharacterized protein LOC111013434 [Momordica charantia]	[more]

BLAST of Moc05g13020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHB3	3.3e-82	37.67	uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DR60	1.3e-81	46.71	uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DTD9	5.3e-80	46.75	uncharacterized protein LOC111024144 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D4A4	4.2e-77	50.00	uncharacterized protein LOC111017470 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1CP53	3.9e-75	85.38	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1	[more]

BLAST of Moc05g13020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..228
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 235..309 e-value: 1.07215E-9 score: 53.4944

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc05g13020	Moc05g13020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc05g13020.1.exon1	Moc05g13020.1.exon1	exon
Moc05g13020.1.exon2	Moc05g13020.1.exon2	exon
Moc05g13020.1.exon3	Moc05g13020.1.exon3	exon
Moc05g13020.1.exon4	Moc05g13020.1.exon4	exon
Moc05g13020.1.exon5	Moc05g13020.1.exon5	exon
Moc05g13020.1.exon6	Moc05g13020.1.exon6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc05g13020.1	cds.Moc05g13020.1	CDS
cds.Moc05g13020.1	cds.Moc05g13020.1_2	CDS
cds.Moc05g13020.1	cds.Moc05g13020.1_3	CDS
cds.Moc05g13020.1	cds.Moc05g13020.1_4	CDS
cds.Moc05g13020.1	cds.Moc05g13020.1_5	CDS
cds.Moc05g13020.1	cds.Moc05g13020.1_6	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc05g13020.1	Moc05g13020.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity