Moc05g06010.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g06010.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr5: 4161323 .. 4161801 (-)
Sequence length	378
RNA-Seq Expression	Moc05g06010.1
Synteny	Moc05g06010.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGCTTTGGAAGTGGAAGATGATTTGTTCTTTGCAGATTTGAGCAGACAGCTCTCTCTTCTTCTCATGGATGAGAACGAAGATCCTCTCCCTCACCCACATGTATCTCTTCAGGTACTCCCTTTTCTCCCTCTCAAAGGGGTGTAGTTCAATCTTCTGTTGGGTTTCTCTCTCTGCTGTGTCTGTGAATTCAAACCACCTTGATCAATTTGCAGGCTTTCTCACATGGAGGCCACCACCCCGCCCGGCCGGTGGCGGCGCATGACCATGCCGCCGCAGCCGCCGCCTACATAGGCGTGAGCAAGGGGACCGGCGTGTTCATCCCCCGGTCGCTGCAGCCGGTGAGGAAACAGAGGCGTGGAAGATACAACAACAACAACAACAACATAAAGGGAAACCGGCAGTTTCCAATCACTATTGATGTGAACTCCCAAGTATCTTCCAACCATTCGTTGCGTCCCAAAAAGGGTTAA

mRNA sequence

ATGGAAGTAGCTTTGGAAGTGGAAGATGATTTGTTCTTTGCAGATTTGAGCAGACAGCTCTCTCTTCTTCTCATGGATGAGAACGAAGATCCTCTCCCTCACCCACATGTATCTCTTCAGGCTTTCTCACATGGAGGCCACCACCCCGCCCGGCCGGTGGCGGCGCATGACCATGCCGCCGCAGCCGCCGCCTACATAGGCGTGAGCAAGGGGACCGGCGTGTTCATCCCCCGGTCGCTGCAGCCGGTGAGGAAACAGAGGCGTGGAAGATACAACAACAACAACAACAACATAAAGGGAAACCGGCAGTTTCCAATCACTATTGATGTGAACTCCCAAGTATCTTCCAACCATTCGTTGCGTCCCAAAAAGGGTTAA

Coding sequence (CDS)

ATGGAAGTAGCTTTGGAAGTGGAAGATGATTTGTTCTTTGCAGATTTGAGCAGACAGCTCTCTCTTCTTCTCATGGATGAGAACGAAGATCCTCTCCCTCACCCACATGTATCTCTTCAGGCTTTCTCACATGGAGGCCACCACCCCGCCCGGCCGGTGGCGGCGCATGACCATGCCGCCGCAGCCGCCGCCTACATAGGCGTGAGCAAGGGGACCGGCGTGTTCATCCCCCGGTCGCTGCAGCCGGTGAGGAAACAGAGGCGTGGAAGATACAACAACAACAACAACAACATAAAGGGAAACCGGCAGTTTCCAATCACTATTGATGTGAACTCCCAAGTATCTTCCAACCATTCGTTGCGTCCCAAAAAGGGTTAA

Protein sequence

MEVALEVEDDLFFADLSRQLSLLLMDENEDPLPHPHVSLQAFSHGGHHPARPVAAHDHAAAAAAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSNHSLRPKKG

Homology

[Close]

BLAST of Moc05g06010.1 vs. NCBI nr
Match: XP_022973676.1 (uncharacterized protein LOC111472261 [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 9.9e-48
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA  AAY GVSKGTGVFIPRSLQP RKQRRGRY    NNIK NRQFPIT+DVNSQVS+N
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRY----NNIKANRQFPITVDVNSQVSNN 120

Query: 121 HSLRPKKG 126
           +SLRPKKG
Sbjct: 121 NSLRPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. NCBI nr
Match: XP_022933798.1 (uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 uncharacterized protein LOC111441102 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 8.4e-47
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA   AY GVSKGTGVFIPRSLQP RKQRRGRY    NNIK NRQFPI IDVNSQVS+N
Sbjct: 61  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRY----NNIKANRQFPIAIDVNSQVSNN 120

Query: 121 HSLRPKKG 126
           +SLRPKKG
Sbjct: 121 NSLRPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. NCBI nr
Match: XP_023539236.1 (uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA  AAY GVSKGTGVFIPRSLQP RKQRRGRY    NNIK NRQFPI IDVNSQVS+N
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRY----NNIKANRQFPIAIDVNSQVSNN 120

Query: 121 HSLRPKKG 126
           +SL PKKG
Sbjct: 121 NSLHPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. NCBI nr
Match: KAG6597461.1 (hypothetical protein SDJN03_10641, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 71

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA  AAY GVSKGTGVFIPRSLQ  RKQRRGRY    NNIK NRQFPI IDVNSQVS+N
Sbjct: 72  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRY----NNIKANRQFPIAIDVNSQVSNN 131

Query: 121 HSLRPKKG 126
           +SLRPKKG
Sbjct: 132 NSLRPKKG 135

[Close]

BLAST of Moc05g06010.1 vs. NCBI nr
Match: KAG7028920.1 (hypothetical protein SDJN02_10103 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA  AAY GVSKGTGVFIPRSLQ  RKQRRGRY    NNIK NRQFPI IDVNSQVS+N
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRY----NNIKANRQFPIAIDVNSQVSNN 120

Query: 121 HSLRPKKG 126
           +SLRPKKG
Sbjct: 121 NSLRPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. ExPASy TrEMBL
Match: A0A6J1I9A5 (uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.8e-48
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA  AAY GVSKGTGVFIPRSLQP RKQRRGRY    NNIK NRQFPIT+DVNSQVS+N
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRY----NNIKANRQFPITVDVNSQVSNN 120

Query: 121 HSLRPKKG 126
           +SLRPKKG
Sbjct: 121 NSLRPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. ExPASy TrEMBL
Match: A0A6J1F5U9 (uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC111441102 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.1e-47
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP-HPHVSLQAFSHGGHHPARPVAAHDHA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP HPHVSLQA +HGGH PARP+A HD A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAA--AAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSN 120
           AAA   AY GVSKGTGVFIPRSLQP RKQRRGRY    NNIK NRQFPI IDVNSQVS+N
Sbjct: 61  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRY----NNIKANRQFPIAIDVNSQVSNN 120

Query: 121 HSLRPKKG 126
           +SLRPKKG
Sbjct: 121 NSLRPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. ExPASy TrEMBL
Match: A0A0A0LAE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 104/129 (80.62%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLPHPHVSLQAFSHGGHHPARPVAAHDHAA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLPHPHVSLQA SHG H+P RP+A H+HAA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGVHYPTRPLATHEHAA 60

Query: 61  A---AAAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQV-SS 120
           A   AAAY GVSKGTGVFIPRSLQP RKQRRGR+    NNIK NRQF I+IDVNSQV S+
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRH----NNIKPNRQFHISIDVNSQVPSN 120

Query: 121 NHSLRPKKG 126
           NHS+RPKKG
Sbjct: 121 NHSMRPKKG 125

[Close]

BLAST of Moc05g06010.1 vs. ExPASy TrEMBL
Match: A0A6J1C913 (uncharacterized protein LOC111009324 OS=Momordica charantia OX=3673 GN=LOC111009324 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.5e-45
Identity = 102/125 (81.60%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLPHPHVSLQAFSHGGHHPARPVAAHDHAA 60
           MEVALEVEDDLFFADLSRQLSLLLMDENEDPLPHPHVSLQAF                  
Sbjct: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLPHPHVSLQAF------------------ 60

Query: 61  AAAAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSNHSL 120
                IGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSNHSL
Sbjct: 61  -----IGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSSNHSL 102

Query: 121 RPKKG 126
           RPKKG
Sbjct: 121 RPKKG 102

[Close]

BLAST of Moc05g06010.1 vs. ExPASy TrEMBL
Match: A0A5D3D068 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00190 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 103/128 (80.47%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLPHPHVSLQAFSHGGHHPARPVAAHDHAA 60
           MEVALE+EDDLFFADLSRQLSLLLMD+NEDPLP PHVSLQA SHG H+P RP+A H+HAA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPRPHVSLQALSHGVHYPTRPLATHEHAA 60

Query: 61  A--AAAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGNRQFPITIDVNSQVSS-N 120
           A  AAAY GVSKGTGVFIPRSLQP RKQRRGR+    NNIK NRQF I+IDVNSQVSS N
Sbjct: 61  AAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRH----NNIKPNRQFHISIDVNSQVSSNN 120

Query: 121 HSLRPKKG 126
           H +RPKKG
Sbjct: 121 HLMRPKKG 124

[Close]

BLAST of Moc05g06010.1 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-10
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENEDPLP------HPHVSLQAFSHGGHHPARPVA 60
           M + LE++DD+FFAD+S+Q+SLL+MDE+E   P         +S Q    GG+  A  + 
Sbjct: 1   MAMELELDDDVFFADISKQISLLIMDEDEHLNPVSLSSSSSSLSFQGLFRGGYQTAPYMY 60

Query: 61  AHDHAAAAAAYIGVSKGTGVFIPRSLQPVRK----QRRGRYNNNN----NNIKGNRQ 104
             +           SKGTGVFIP+S QP R+    Q++GRY++ N    +++  NRQ
Sbjct: 61  QQEQ----------SKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQQHSLHQNRQ 107

[Close]

BLAST of Moc05g06010.1 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-08
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 1   MEVALEVEDDLFFADLSRQLSLLLMDENE-DPLP-HPHVSLQAFSHGGHHPARPVAAHDH 60
           M + LE++DD+FFAD+S+QL+LL+ DE+E +P+     VS Q    G +  +       +
Sbjct: 1   MAMELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYN 60

Query: 61  AAAAAAYIGVSKGTGVFIPRSLQPVRKQRRGRYNNNNNNIKGN----RQFP 106
                  I  SKGTGVFIPRS QP RK     +        G+    +QFP
Sbjct: 61  EQINYNVIRESKGTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFP 111

The following BLAST results are available for this feature:

BLAST of Moc05g06010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973676.1	9.9e-48	83.59	uncharacterized protein LOC111472261 [Cucurbita maxima]	[more]
XP_022933798.1	8.4e-47	82.81	uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 unchar...	[more]
XP_023539236.1	1.1e-46	82.81	uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo]	[more]
KAG6597461.1	2.4e-46	82.81	hypothetical protein SDJN03_10641, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028920.1	2.4e-46	82.81	hypothetical protein SDJN02_10103 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Moc05g06010.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g06010.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9A5	4.8e-48	83.59	uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261...	[more]
A0A6J1F5U9	4.1e-47	82.81	uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A0A0LAE7	1.0e-45	80.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1	[more]
A0A6J1C913	6.5e-45	81.60	uncharacterized protein LOC111009324 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5D3D068	1.4e-44	80.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Moc05g06010.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19190.1	5.1e-10	38.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G06070.1	2.8e-08	37.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..119
None	No IPR available	PANTHER	PTHR34956	OS05G0397300 PROTEIN	coord: 1..115
None	No IPR available	PANTHER	PTHR34956:SF2	OS05G0397300 PROTEIN	coord: 1..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc05g06010	Moc05g06010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc05g06010.1.exon2	Moc05g06010.1.exon2	exon
Moc05g06010.1.exon1	Moc05g06010.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc05g06010.1	cds.Moc05g06010.1_2	CDS
cds.Moc05g06010.1	cds.Moc05g06010.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc05g06010.1	Moc05g06010.1-protein	polypeptide