Moc04g39030.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g39030.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	general transcription factor 3C polypeptide 6-like
Location	chr4: 29092136 .. 29094626 (-)
Sequence length	405
RNA-Seq Expression	Moc04g39030.1
Synteny	Moc04g39030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCTATCTGTATGTTTCTAACCTACTCTGATTTCAAGTAATGAATTTTTCTCTACTGTTGAGCTTATCATGGTTAAATCAAAAATTCAATGTTCATTATTTTTCACTCTAAGCTGTTAAGTATGCATCATTTGAACATTTAAAAATTAGACTTAACAGGTAAAAGATTAATTGTCTTAAGTTAGTTAAACAGAAATTTGATTGTACAATAGTCCACAAGTAATGTATTCAATTGTATATTTTATGAATAATTGTTGACATTCTTTGTAACAAATTGAATGGCATATGTTATGAGAACCGTTGGAGAGTTAAGTAAAAACTGACTTATCTTATTGATTTAAAAAAGAATGGAAACGAAAAGAGAAGCTCCACCTTACAAATAGGTTAGGCTTGAGTGGAATGATAGTCAGTTACATTAGGTTCCATCAAGTAAAAATAAAATAACCACCCTTGGTAAAAACTAATCCTAACAACTAATCAAAATAAGATTACAAATTGACCTCTCCATCAATACCAATCCCCTCCTGAGAAAAACAACTAAATCACAAGTTAGGACTACTTCTCACCTGGATGATAATCGTTAGCCAAGTCAAAGCATTATACACATTATTAGTGTTGAGATCAGATGGCAGATTAACAGCATACTGTTGGATTTGAGGGAAAGGAGAGCAAATTACATTAGTTGCCATCAAGTAAAAGTTAAATAACCCCAGGTAAAAACTAATCCTGACAGCTACTCAAATATAAGATTATTATTTAACCTCCATGCCTGTATCAAGAGCAATACTAAGTTTATATGGATTGCTACTGTTCAATAGACAGGTATTAATCACCAACCATCTCAATTGATAACAAAAACTTTCCCACTATTATACTCCTTTACTAGGCTTCAGTGCTAGACTAAGATACAACTTGTCCTGGAGTATCTGGTGAGGCGTGAGGGTGTTATCAAGTTTTTGATAATTACGTGTTGGGATCTTTAAGAATTAAATTGATGTGTTTTGTTGGCCAAGAATTTTGTTAATCTGTATGATTTATTAAAGTTTTGTTTAATTTGTTTTGCAGGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTAAGTTGTAAAAATAAGATTCAAGCTCTGCACCTAGTGTACTGCAGAACAATCTGAATGTGTAAAATCTTTGGCATTATTGAGCTCACACATGATCACCTCCGTATGCATTTTTCTACTTTGCAGTTTATTTTTCTTAAGTAGTTAAGTTATCTTCTACCTGCCTCTCTGTTTGAGAGGAACTTGGGGCTTCACTTGCTATTCTTGAGTAATTTATGATTTATTAGGTAAAGTTCTATCGGATATGTGTGACTTATGTTTTTGTTCCTTCAATAAAGAAGCTTTAATTTGTTGTTTACTGTTGTTAAGAGTACAATCATTTTTTTCATTTGAGGATAAGCTTCCAGATTAGATGTATATTACTAGAGAAAAACTCCTGAACCATACTCCCTTTTGTTTACATAATAAATGAAATATATGGACCCTGCACCATCATTTCTAATACAGTGCTCACAATTTAGATGAAATTAATAATATTATTTTTTTGTTTGGTCGGGGGTAAGGCTGTCTCTGTCCGATTTTTTGTGAATAACAGGCAAATATATATAAGATCCTTGCCATTTTATGATCATACTAAATATAGTGAATTAATTTATGTTTATCTCTCTTTTTGTAGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGGTGAGTAACCTCATTTTATTATATTTCTTAACCTGTAGCATTAGAAAACTATGTACTGGGGATGGCAGTTTGGAAGCAATTCCTTAATAGAAGCTATAAACTATATACTTGTTTAGCTGTCTTAAAGAACGACATTTTTTTGGTTGTTTATCTCAAAATGCATATATTTTATATTTTAAATTTTCAACCATTTCAATATGACCTTGAGCTAACTTCATCCAGTAAATTTAACACATGTATGAATTTGATTTCTGAACCTTTATGTAAGTTTCCAATTTGTTGGTTGAACCATGAAAAAATTTAATGAACTTTAAAAAAATGGTGGAACATGCTGTGTTGCTGCTTTGCTTATACTGTGTGCACATTGCAATAGAGATTGGAAAACCATTACTGAATTCATGTTCACTACTGTAGAGGAAGTCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCTGAGCACACTTGA

mRNA sequence

ATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCTATCTGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGAGGAAGTCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCTGAGCACACTTGA

Coding sequence (CDS)

ATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCTATCTGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGAGGAAGTCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCTGAGCACACTTGA

Protein sequence

MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKLLPDSAVPNSTSEHT

Homology

[Close]

BLAST of Moc04g39030.1 vs. NCBI nr
Match: XP_022133708.1 (uncharacterized protein LOC111006225 [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 121 LPDSAVPNSTSEHT 135
           LPDSAVPNSTSEHT
Sbjct: 121 LPDSAVPNSTSEHT 134

[Close]

BLAST of Moc04g39030.1 vs. NCBI nr
Match: XP_023550663.1 (uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550664.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550665.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550666.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK  ID ASDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVS+V  EEEA PSET  R+ +AV PN+APRK+LKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSMV--EEEAVPSETNRRSEKAVEPNQAPRKDLKPVASVHKILKFKL 120

Query: 121 LP-----DSAVPNSTS 132
           L      DSAVP+STS
Sbjct: 121 LDSVDSVDSAVPDSTS 134

[Close]

BLAST of Moc04g39030.1 vs. NCBI nr
Match: XP_022939121.1 (uncharacterized protein LOC111445121, partial [Cucurbita moschata])

HSP 1 Score: 204.5 bits (519), Expect = 5.6e-49
Identity = 108/136 (79.41%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 143 MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 202

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVS+V  EEEA PSET  R+ +AV PN+APR++LKP+ASVHKILKFKL
Sbjct: 203 ETIGTCLTFAEEEVSMV--EEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKL 262

Query: 121 LP-----DSAVPNSTS 132
           L      DSAVP+STS
Sbjct: 263 LDSVDSVDSAVPDSTS 276

[Close]

BLAST of Moc04g39030.1 vs. NCBI nr
Match: XP_022993830.1 (uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993832.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993833.1 uncharacterized protein LOC111489725 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVS+V  EEEA PS+T  R+ +AV P++APRK+LKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSMV--EEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKL 120

Query: 121 LP--DSAVPNSTS 132
           L   DSAVP+STS
Sbjct: 121 LDSVDSAVPDSTS 131

[Close]

BLAST of Moc04g39030.1 vs. NCBI nr
Match: XP_038885696.1 (uncharacterized protein LOC120075999 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48
Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK TID A D EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKATIDSACDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEV VVEEE E  PSE+  R+ EA  P +APRKELKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAE--PSESNRRSREAAEPKQAPRKELKPVASVHKILKFKL 120

Query: 121 LPDSAVPNSTS 132
           L DSAVPNS S
Sbjct: 121 L-DSAVPNSIS 128

[Close]

BLAST of Moc04g39030.1 vs. ExPASy TrEMBL
Match: A0A6J1BZW5 (uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006225 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 121 LPDSAVPNSTSEHT 135
           LPDSAVPNSTSEHT
Sbjct: 121 LPDSAVPNSTSEHT 134

[Close]

BLAST of Moc04g39030.1 vs. ExPASy TrEMBL
Match: A0A6J1FF13 (uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC111445121 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.7e-49
Identity = 108/136 (79.41%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 143 MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 202

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVS+V  EEEA PSET  R+ +AV PN+APR++LKP+ASVHKILKFKL
Sbjct: 203 ETIGTCLTFAEEEVSMV--EEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKL 262

Query: 121 LP-----DSAVPNSTS 132
           L      DSAVP+STS
Sbjct: 263 LDSVDSVDSAVPDSTS 276

[Close]

BLAST of Moc04g39030.1 vs. ExPASy TrEMBL
Match: A0A6J1JTZ1 (uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.1e-49
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVS+V  EEEA PS+T  R+ +AV P++APRK+LKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSMV--EEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKL 120

Query: 121 LP--DSAVPNSTS 132
           L   DSAVP+STS
Sbjct: 121 LDSVDSAVPDSTS 131

[Close]

BLAST of Moc04g39030.1 vs. ExPASy TrEMBL
Match: A0A0A0LML8 (TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.0e-44
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK TID ASD EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEV VV  EEEA PSET+  + E V P +A +KELK +A VHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVPVV--EEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKL 120

Query: 121 LPDSAVPNSTS 132
           L DS VP+S S
Sbjct: 121 L-DSDVPSSIS 128

[Close]

BLAST of Moc04g39030.1 vs. ExPASy TrEMBL
Match: A0A1S4DTV8 (general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LOC103485483 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.0e-43
Identity = 102/131 (77.86%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           MEK TID AS+ EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEV VV  EEEA PSET   + EA  P +A RKELK  A VHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVPVV--EEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKL 120

Query: 121 LPDSAVPNSTS 132
           L DS VP+  S
Sbjct: 121 L-DSDVPSPIS 128

[Close]

BLAST of Moc04g39030.1 vs. TAIR 10
Match: AT3G15420.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-20
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 13  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAE 72
           EE++V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK+VGEY ETIGTCL F+ 
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFS- 61

Query: 73  EEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIASVHKILKFKLLPDSAVPNST 132
                  E+EE   SE           N+ P K+ ++P+A +HKILKF+L   +A+ N  
Sbjct: 62  -------EKEEVSASE-----------NQMPHKKIIEPVAKLHKILKFRL---AALDNDD 101

[Close]

BLAST of Moc04g39030.1 vs. TAIR 10
Match: AT1G80745.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 13  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAE 72
           E+++V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K+VGEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 73  EEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIASVHKILKFKLLP 123
           +                          N+ P+K+ ++P+A +HKILKF+L P
Sbjct: 62  K------------------------GDNQTPQKKTVEPVAKLHKILKFRLAP 89

The following BLAST results are available for this feature:

BLAST of Moc04g39030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133708.1	2.3e-66	100.00	uncharacterized protein LOC111006225 [Momordica charantia]	[more]
XP_023550663.1	1.5e-49	80.88	uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022939121.1	5.6e-49	79.41	uncharacterized protein LOC111445121, partial [Cucurbita moschata]	[more]
XP_022993830.1	1.3e-48	80.45	uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharac...	[more]
XP_038885696.1	3.6e-48	82.44	uncharacterized protein LOC120075999 [Benincasa hispida]	[more]

BLAST of Moc04g39030.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g39030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZW5	1.1e-66	100.00	uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1FF13	2.7e-49	79.41	uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1JTZ1	6.1e-49	80.45	uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725...	[more]
A0A0A0LML8	2.0e-44	78.63	TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680...	[more]
A0A1S4DTV8	5.0e-43	77.86	general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Moc04g39030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15420.1	4.5e-20	48.36	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	1.1e-18	45.54	Transcription factor TFIIIC, tau55-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.4370		coord: 3..119 e-value: 1.2E-10 score: 43.1
IPR019481	Transcription factor TFIIIC, triple barrel domain	PFAM	PF10419	TFIIIC_sub6	coord: 13..118 e-value: 2.2E-12 score: 46.6
IPR042771	TFIIIC subunit GTF3C6-like	PANTHER	PTHR21860	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED	coord: 7..128

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc04g39030	Moc04g39030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc04g39030.1.exon4	Moc04g39030.1.exon4	exon
Moc04g39030.1.exon3	Moc04g39030.1.exon3	exon
Moc04g39030.1.exon2	Moc04g39030.1.exon2	exon
Moc04g39030.1.exon1	Moc04g39030.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc04g39030.1	cds.Moc04g39030.1_4	CDS
cds.Moc04g39030.1	cds.Moc04g39030.1_3	CDS
cds.Moc04g39030.1	cds.Moc04g39030.1_2	CDS
cds.Moc04g39030.1	cds.Moc04g39030.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc04g39030.1	Moc04g39030.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000127	transcription factor TFIIIC complex