Moc04g31110.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g31110.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr4: 23365576 .. 23366683 (+)
Sequence length243
RNA-Seq ExpressionMoc04g31110.1
SyntenyMoc04g31110.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATACAGCAGGGGTCATAATCAAAGCTGAATTAATTGTTTTCTTTTCCAAAATAAATTATTGCCAATTTAAAATTCAAATCCTTTTCTAATGAGAGAGTTGTTTGTCGAATTGCAAGTGACCAAAAGATTCCTTTGGATTCAACCAATAACTCCAACTAATCTATTTTCAAGTTTCTCCCAAAAAAAAAAAAAACCCAATCTAGTTTCATCATTTCCCATTTTTCATTAATGTTTAACATAAAATCTCATATTAATTAACAACCATTGTAGGTGTAAGATTTTGCTTTTAATAAATCAAGTTTGCTCAACTATTACCTGTTTCTTTATCCTGAAATCTTGCCTCAATTTTAAGAATGTTTAAAGAAAGTAGATTGTGAAATAAAGAAATTATCAGTAAACGAGGTAAAATTTATTTTTGACAAAAGGTAAAATAAAAAATAAAAAAAACTTAGGGATTTTGAAATGTATAAACATATGAGAAAATGTAGTTTGTCCTAGAGAAGCATTGAAAATAGGGAAACATCAATAATTAGAAAGAATGGAACAAAAGAACTTATATTAAAATAATTTTAGAGGCACTAATTAACATCGTTTAGGAGGTGCTGTTCTTGTTTGTTTTTATTCATGTCCATACCTTTGAGTTAAAACAAAGATTAGGAAAGTGATGATAGGGAATAAATAAAGACTTTATACATGTAATGTTATTTTAATTGAAAACAAACTCGTGTATAAAACAAAGTATTTGACCATTGTGGTTCAGTTGATCTGGCCGAACTCTTTGCTCTTGAAGAGGGTTTGTCTTTGACAGTCGATTCGGCGTTTCGGCCTATAATCTTGGAGTCTGATTCTTTGCGTTGTATCGCCTTGCTGGAATAGGATGCTGCGGACTTGTCGGAAGTGGGTCTTTTGCTTTCTAATCTCCATCGGCGTTGCCATCAGTCTGGTTCTGTTGGTTTTGGTTTCACTCATCGAGAAGGAAATCGTGCGGCTGACTGTCTCGCTCGTTTTGCTTTGGTGCACCAGGTGGATCGTGTTTGGCTTGAGGAAGCTCCTTTGACCATTTCTGGAGTTCTTATTTCTGATTGTTTGGTCTCTGCTGTGTAG

mRNA sequence

ATGTATACAGCAGGGGATGCTGCGGACTTGTCGGAAGTGGGTCTTTTGCTTTCTAATCTCCATCGGCGTTGCCATCAGTCTGGTTCTGTTGGTTTTGGTTTCACTCATCGAGAAGGAAATCGTGCGGCTGACTGTCTCGCTCGTTTTGCTTTGGTGCACCAGGTGGATCGTGTTTGGCTTGAGGAAGCTCCTTTGACCATTTCTGGAGTTCTTATTTCTGATTGTTTGGTCTCTGCTGTGTAG

Coding sequence (CDS)

ATGTATACAGCAGGGGATGCTGCGGACTTGTCGGAAGTGGGTCTTTTGCTTTCTAATCTCCATCGGCGTTGCCATCAGTCTGGTTCTGTTGGTTTTGGTTTCACTCATCGAGAAGGAAATCGTGCGGCTGACTGTCTCGCTCGTTTTGCTTTGGTGCACCAGGTGGATCGTGTTTGGCTTGAGGAAGCTCCTTTGACCATTTCTGGAGTTCTTATTTCTGATTGTTTGGTCTCTGCTGTGTAG

Protein sequence

MYTAGDAADLSEVGLLLSNLHRRCHQSGSVGFGFTHREGNRAADCLARFALVHQVDRVWLEEAPLTISGVLISDCLVSAV
Homology
[Close]
BLAST of Moc04g31110.1 vs. ExPASy TrEMBL
Match: A0A6A3AC34 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110503pilonHSYRG00762 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.9e-04
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 9   DLSEVGLLLSNLHRRCHQSGSVGFGFTHREGNRAADCLARFALVHQVDRVWLEEAPLTIS 68
           D +E+  ++SN+H+      ++ F F HR  N AA  +A+     Q   VW+EEAPL I 
Sbjct: 462 DRTEIRAIVSNVHKMARVFDNLSFSFVHRSQNAAAHAIAKDGRSFQAQMVWIEEAPLEIE 521

Query: 69  GVLISD 75
            V+  D
Sbjct: 522 AVVARD 527

The following BLAST results are available for this feature:
BLAST of Moc04g31110.1 vs.
Match NameE-valueIdentityDescription
BLAST of Moc04g31110.1 vs.
Match NameE-valueIdentityDescription
BLAST of Moc04g31110.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A3AC347.9e-0436.36Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110503pilon... [more]
BLAST of Moc04g31110.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc04g31110Moc04g31110gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc04g31110.1.exon1Moc04g31110.1.exon1exon
Moc04g31110.1.exon2Moc04g31110.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc04g31110.1cds.Moc04g31110.1CDS
cds.Moc04g31110.1cds.Moc04g31110.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc04g31110.1Moc04g31110.1-proteinpolypeptide