MS028244.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS028244.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	auxin-responsive protein SAUR50-like
Location	scaffold47: 1068879 .. 1069163 (-)
Sequence length	285
RNA-Seq Expression	MS028244.1
Synteny	MS028244.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCAGAAAACCCGCCGCTCTGAAGCACATTCTGAAGCGCTGCTCCAGCCTCGGCCGGAAGCAGGAGGCGCCGTACGACGACGTTCCGAAGGGGCACTTCGCCGTCTACGTCGGGGAGAATCGGAGCCGACATGTCGTACCGATCTCGCTGCTGACTCACCCCGATTTCCAGTGCCTCCTCCGCCTCGCCGAGGAGGAGTTCGGCTTCCACCACCACATGGGCCTCACCATCCCCTGTGAAGAACTCGTTTTCCGCTCTCTCACCGCCGCCCTCAAATGA

mRNA sequence

ATGGCCATCAGAAAACCCGCCGCTCTGAAGCACATTCTGAAGCGCTGCTCCAGCCTCGGCCGGAAGCAGGAGGCGCCGTACGACGACGTTCCGAAGGGGCACTTCGCCGTCTACGTCGGGGAGAATCGGAGCCGACATGTCGTACCGATCTCGCTGCTGACTCACCCCGATTTCCAGTGCCTCCTCCGCCTCGCCGAGGAGGAGTTCGGCTTCCACCACCACATGGGCCTCACCATCCCCTGTGAAGAACTCGTTTTCCGCTCTCTCACCGCCGCCCTCAAATGA

Coding sequence (CDS)

ATGGCCATCAGAAAACCCGCCGCTCTGAAGCACATTCTGAAGCGCTGCTCCAGCCTCGGCCGGAAGCAGGAGGCGCCGTACGACGACGTTCCGAAGGGGCACTTCGCCGTCTACGTCGGGGAGAATCGGAGCCGACATGTCGTACCGATCTCGCTGCTGACTCACCCCGATTTCCAGTGCCTCCTCCGCCTCGCCGAGGAGGAGTTCGGCTTCCACCACCACATGGGCCTCACCATCCCCTGTGAAGAACTCGTTTTCCGCTCTCTCACCGCCGCCCTCAAATGA

Protein sequence

MAIRKPAALKHILKRCSSLGRKQEAPYDDVPKGHFAVYVGENRSRHVVPISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK

Homology

[Close]

BLAST of MS028244.1 vs. NCBI nr
Match: KAG7011743.1 (Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAIRKPAALKHILKRCSSLGRKQEA-----PYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
           M I KPAALKHI+KRCSSLGRKQ+A      YD VPKGHFAVYVGENRSR+VVPISLLTH
Sbjct: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101

Query: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           PDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 140

[Close]

BLAST of MS028244.1 vs. NCBI nr
Match: XP_022952665.1 (auxin-responsive protein SAUR50-like [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1  MAIRKPAALKHILKRCSSLGRKQEA-----PYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
          M I KPAALKHI+KRCSSLGRKQ+A      YD VPKGHFAVYVGENRSR+VVPISLLTH
Sbjct: 1  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 60

Query: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
          PDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of MS028244.1 vs. NCBI nr
Match: KAG6572079.1 (Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAIRKPAALKHILKRCSSLGRKQEA-----PYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
           M I KPAALKHI+KRCSSLGRKQ+A      YD VPKGHFAVYVGENRSR+VVPISLLTH
Sbjct: 49  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 108

Query: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           PDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 109 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 147

[Close]

BLAST of MS028244.1 vs. NCBI nr
Match: XP_022969389.1 (auxin-responsive protein SAUR50-like [Cucurbita maxima] >XP_022975693.1 auxin-responsive protein SAUR50-like [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 85/99 (85.86%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1  MAIRKPAALKHILKRCSSLGRKQEA-----PYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
          M I KPAALKHI+KRCSSLGRKQ+A      YD VPKGHFAVYVG+NRSR+VVPISLLTH
Sbjct: 1  MPIPKPAALKHIVKRCSSLGRKQDATATATAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
          PDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of MS028244.1 vs. NCBI nr
Match: KAG6588978.1 (Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MAIRKP----AALKHILKRCSSLGRKQEAP---YDDVPKGHFAVYVGENRSRHVVPISLL 60
           MAIRKP    AALK I+KRCSSLGRKQEA    +DDVPKGHFAVYVGENRSR+VVPISLL
Sbjct: 1   MAIRKPAIHTAALKQIVKRCSSLGRKQEAAAAGFDDVPKGHFAVYVGENRSRYVVPISLL 60

Query: 61  THPDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           THPDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 61  THPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 101

[Close]

BLAST of MS028244.1 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.0e-31
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 3   IRKPAALKHILKRCSSLGRKQEAPYD------DVPKGHFAVYVGENRSRHVVPISLLTHP 62
           + + A LK ILKRCSSLG+K    YD      DVPKGHF VYVGENRSR++VPIS LTHP
Sbjct: 10  LTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHP 69

Query: 63  DFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           +FQ LL+ AEEEFGF H MGLTIPC+ELVF++LT+ ++
Sbjct: 70  EFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107

[Close]

BLAST of MS028244.1 vs. ExPASy Swiss-Prot
Match: Q9SL45 (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.2e-25
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 7   AALKHILKRCSSLGR----------KQEAPYDDVPKGHFAVYVGENRSRHVVPISLLTHP 66
           A++K I+KRCSSL +          +++    DVPKGHF VYVG NRSR++VPIS L H 
Sbjct: 15  ASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHS 74

Query: 67  DFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           +FQ LLRLAEEEFGF H MGLTIPC+E+ FRSL +  +
Sbjct: 75  EFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISMFR 112

[Close]

BLAST of MS028244.1 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  ALKHILKRCSSLGRKQE--APYDDVPKGHFAVYVGENRSRHVVPISLLTHPDFQCLLRLA 67
          A+K I+K+CSS G+  +     +DVPKGHF VYVGE R+R++VPIS L HP FQ LL+ +
Sbjct: 15 AIKKIIKKCSSFGKNNDDSGLPNDVPKGHFVVYVGERRNRYIVPISCLDHPTFQDLLQRS 74

Query: 68 EEEFGFHHHMGLTIPCEELVFRS 89
          EEEFGF+H MG+ IPC+E+ F S
Sbjct: 75 EEEFGFNHDMGIIIPCQEVDFLS 97

[Close]

BLAST of MS028244.1 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-15
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 20 GRKQEAPYDDVPKGHFAVYVGENRSRHVVPISLLTHPDFQCLLRLAEEEFGFHHHM-GLT 79
          G ++ +   D PKG+ AVYVGE   R V+P+S L  P FQ LL  AEEEFG+ H M GLT
Sbjct: 7  GIRKASKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLT 66

Query: 80 IPCEELVFRSLTAAL 94
          IPC E VF+ +T+ L
Sbjct: 67 IPCSEDVFQCITSCL 81

[Close]

BLAST of MS028244.1 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-15
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 13 LKRCSSLGRKQEAPYDDVPKGHFAVYVGENRSRHVVPISLLTHPDFQCLLRLAEEEFGFH 72
          +++ S    +  +   DV KG+ AVYVGE   R V+P+S L  P FQ LL  AEEEFG+H
Sbjct: 8  IRKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYH 67

Query: 73 H-HMGLTIPCEELVFRSLTAAL 94
          H + GLTIPC E VF+ +T+ L
Sbjct: 68 HPNGGLTIPCSEDVFQHITSFL 89

[Close]

BLAST of MS028244.1 vs. ExPASy TrEMBL
Match: A0A6J1GME7 (auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC111455291 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.3e-41
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1  MAIRKPAALKHILKRCSSLGRKQEA-----PYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
          M I KPAALKHI+KRCSSLGRKQ+A      YD VPKGHFAVYVGENRSR+VVPISLLTH
Sbjct: 1  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 60

Query: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
          PDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of MS028244.1 vs. ExPASy TrEMBL
Match: A0A6J1I2G2 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111468411 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.3e-41
Identity = 85/99 (85.86%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1  MAIRKPAALKHILKRCSSLGRKQEA-----PYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
          M I KPAALKHI+KRCSSLGRKQ+A      YD VPKGHFAVYVG+NRSR+VVPISLLTH
Sbjct: 1  MPIPKPAALKHIVKRCSSLGRKQDATATATAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
          PDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of MS028244.1 vs. ExPASy TrEMBL
Match: A0A6J1EKI0 (auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC111435304 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MAIRKP----AALKHILKRCSSLGRKQEAP---YDDVPKGHFAVYVGENRSRHVVPISLL 60
           MAIRKP    AALK I+KRCSSLGRKQEA    +DDVPKGHFAVYVGENRSR+VVPISLL
Sbjct: 34  MAIRKPAIHTAALKQIVKRCSSLGRKQEAAAAGFDDVPKGHFAVYVGENRSRYVVPISLL 93

Query: 61  THPDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           THPDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAAL+
Sbjct: 94  THPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALQ 134

[Close]

BLAST of MS028244.1 vs. ExPASy TrEMBL
Match: A0A6J1JNJ6 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111486307 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 88/106 (83.02%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MAIRKP----AALKHILKRCSSLGRKQEAP--------YDDVPKGHFAVYVGENRSRHVV 60
           MAIRKP    AALK I+KRCSSLGRKQEA         +DDVPKGHFAVYVGENRSR+VV
Sbjct: 1   MAIRKPAIHTAALKQIVKRCSSLGRKQEAAVAATATAGFDDVPKGHFAVYVGENRSRYVV 60

Query: 61  PISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           PISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEE+VFRSLTAALK
Sbjct: 61  PISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 106

[Close]

BLAST of MS028244.1 vs. ExPASy TrEMBL
Match: A0A0A0K5S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G008430 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1  MAIRKPAALKHILKRCSSLGRKQE-----APYDDVPKGHFAVYVGENRSRHVVPISLLTH 60
          MAI KP ALK I+KRCSSLGRKQ+       YD VPKGHFAVYVG+NRSR+VVPISLLTH
Sbjct: 1  MAIPKPTALKQIVKRCSSLGRKQDPTATPPAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 61 PDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
          PDFQCLLRLAEEEFGF HHMGLTIPCEE+VFRSLTAALK
Sbjct: 61 PDFQCLLRLAEEEFGFRHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of MS028244.1 vs. TAIR 10
Match: AT4G34760.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-32
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 3   IRKPAALKHILKRCSSLGRKQEAPYD------DVPKGHFAVYVGENRSRHVVPISLLTHP 62
           + + A LK ILKRCSSLG+K    YD      DVPKGHF VYVGENRSR++VPIS LTHP
Sbjct: 10  LTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHP 69

Query: 63  DFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           +FQ LL+ AEEEFGF H MGLTIPC+ELVF++LT+ ++
Sbjct: 70  EFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107

[Close]

BLAST of MS028244.1 vs. TAIR 10
Match: AT1G75580.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 3   IRKPAALKHILKRCSSLGRKQEAPYDD--------VPKGHFAVYVGENRSRHVVPISLLT 62
           + + A +K ILKRCSSLG+KQ   Y +        VPKGHF VYVGENR R+VVPIS LT
Sbjct: 9   LTQTAMIKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRYVVPISFLT 68

Query: 63  HPDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
            P+FQ LL+ AEEEFGF H MGLTIPCEE+VFRSLT+ L+
Sbjct: 69  RPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

[Close]

BLAST of MS028244.1 vs. TAIR 10
Match: AT4G36110.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 2   AIRKPAALKHILKRCSSLGRKQEAP--YDDVPKGHFAVYVGENRSRHVVPISLLTHPDFQ 61
           A+ + A+LK ILKRCSSLG+K +    ++DVPKGHF VYVG++RSR+VVPIS L H +FQ
Sbjct: 10  ALSQAASLKQILKRCSSLGKKNQGNCYFNDVPKGHFPVYVGQHRSRYVVPISWLDHHEFQ 69

Query: 62  CLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
            LL+LAEEEFGF H MGLTIPC+E+VFRSL +  +
Sbjct: 70  SLLQLAEEEFGFEHEMGLTIPCDEVVFRSLISMFR 104

[Close]

BLAST of MS028244.1 vs. TAIR 10
Match: AT2G21220.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-29
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 3   IRKPAALKHILKRCSSLGRKQEAPYD----DVPKGHFAVYVGENRSRHVVPISLLTHPDF 62
           + + A LK ILKRCSSL + Q    D    DVPKGHF VYVGE RSR++VPIS LTHP F
Sbjct: 9   LTQTAMLKQILKRCSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKF 68

Query: 63  QCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAAL 94
           + LL+ AEEEFGF+H MGLTIPCEE+VFRSLT+ +
Sbjct: 69  KSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

[Close]

BLAST of MS028244.1 vs. TAIR 10
Match: AT2G16580.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 123.6 bits (309), Expect = 8.2e-29
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 3   IRKPAALKHILKRCSSLGRKQ--------EAPYDDVPKGHFAVYVGENRSRHVVPISLLT 62
           + + A L+ ILKRCSSLG+K         + P  DVPKGHF VYVG NRSR++VPIS LT
Sbjct: 10  LAQTAMLRQILKRCSSLGKKNGGGGYEEVDLPL-DVPKGHFPVYVGHNRSRYIVPISFLT 69

Query: 63  HPDFQCLLRLAEEEFGFHHHMGLTIPCEELVFRSLTAALK 95
           + DFQCLLR AEEEFGF H MGLTIPC+EL F+ LT+ ++
Sbjct: 70  NLDFQCLLRRAEEEFGFDHDMGLTIPCDELFFQDLTSMIR 108

The following BLAST results are available for this feature:

BLAST of MS028244.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011743.1	6.7e-41	86.87	Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022952665.1	6.7e-41	86.87	auxin-responsive protein SAUR50-like [Cucurbita moschata]	[more]
KAG6572079.1	6.7e-41	86.87	Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022969389.1	1.5e-40	85.86	auxin-responsive protein SAUR50-like [Cucurbita maxima] >XP_022975693.1 auxin-re...	[more]
KAG6588978.1	1.5e-40	87.13	Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS028244.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65695	5.0e-31	65.31	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
Q9SL45	9.2e-25	57.14	Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR1...	[more]
P0DKL1	3.3e-22	57.83	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
P33081	3.9e-15	53.33	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33083	6.6e-15	48.78	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of MS028244.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GME7	3.3e-41	86.87	auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I2G2	7.3e-41	85.86	auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111468411...	[more]
A0A6J1EKI0	2.1e-40	86.14	auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC1114353...	[more]
A0A6J1JNJ6	2.8e-40	83.02	auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111486307...	[more]
A0A0A0K5S8	1.5e-38	82.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G008430 PE=3 SV=1	[more]

BLAST of MS028244.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34760.1	3.6e-32	65.31	SAUR-like auxin-responsive protein family	[more]
AT1G75580.1	1.2e-30	64.00	SAUR-like auxin-responsive protein family	[more]
AT4G36110.1	2.0e-30	64.21	SAUR-like auxin-responsive protein family	[more]
AT2G21220.1	1.3e-29	65.26	SAUR-like auxin-responsive protein family	[more]
AT2G16580.1	8.2e-29	61.00	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 21..92 e-value: 2.4E-26 score: 91.7
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 5..93
None	No IPR available	PANTHER	PTHR31374:SF311	SMALL AUXIN-UP RNA-RELATED	coord: 5..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS028244	MS028244	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS028244.1-cds	MS028244.1-cds-scaffold47:1068879..1069163	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS028244.1	MS028244.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin